KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:36:21 2014 Check: 00 .. Name: ENSTTRP00000016015/1-955 Len: 1119 Check: 4634 Weight: 1.00 Name: bmy_13550T0/1-1117 Len: 1119 Check: 3779 Weight: 1.00 Name: ENSP00000377686/1-989 Len: 1119 Check: 1803 Weight: 1.00 Name: BACU007026/1-974 Len: 1119 Check: 3592 Weight: 1.00 Name: ENSBTAP00000028616/1-989 Len: 1119 Check: 114 Weight: 1.00 // 1 50 ENSTTRP00000016015/1-955 MKVVNLKQAI LQAWKERWSD YQWAINMKKF FPKGATWDIL NLAEALLEQA bmy_13550T0/1-1117 MKVVNLKQAI LQAWKERWSD YQWAINMKKF FPKGATWDIL NLAEALLEQA ENSP00000377686/1-989 MKVVNLKQAI LQAWKERWSD YQWAINMKKF FPKGATWDIL NLADALLEQA BACU007026/1-974 MKVVNLKQAI LQAWKERWSD YQWAINMKKF FPKGATWDIL NLAEALLEQA ENSBTAP00000028616/1-989 MKVVNLKQAI LQAWKERWSD YQWAVNMKKF FPKGATWDIL NLAEALLEQA 51 100 ENSTTRP00000016015/1-955 MIGPSPNPLI LSYLKYAISS QMVSYSSVLT AISKFDDFSR DLCVQALLDI bmy_13550T0/1-1117 MIGPSPNPLI LSYLKYAISS QMVSYSSVLT AISKFDDFSR DLCVQALLDI ENSP00000377686/1-989 MIGPSPNPLI LSYLKYAISS QMVSYSSVLT AISKFDDFSR DLCVQALLDI BACU007026/1-974 MIGPSPNPLI LSYLKYAISS QMVSYSSVLT AISKFDDFSR DLCVQALLDI ENSBTAP00000028616/1-989 MIGPSPNPLI LSYLKYAISS QMVSYSSVLT AISKFDDFSR DLCVQALLDI 101 150 ENSTTRP00000016015/1-955 MDMFCDRLXX XXXXXXXXXX XXXXXXXXXX XLRCTAASAE RLREGL-AGT bmy_13550T0/1-1117 MDMFCDRLSC HGKAEECIGL CRALLSALHW LLRCTAASAE RLREGLEAGT ENSP00000377686/1-989 MDMFCDRLSC HGKAEECIGL CRALLSALHW LLRCTAASAE RLREGLEAGT BACU007026/1-974 MDMFCDRLSC HGKAEECIGL CRALLSALHW LLRCTAASAE RLREGLEAGT ENSBTAP00000028616/1-989 MDMFCDRLSC HGKAEECIGL CRALLSALHW LLRCTAASAE RLREGLEAGT 151 200 ENSTTRP00000016015/1-955 PAAGEKQLAM CLQRLEKTLS STKNRALLHI AKLEEASSWT AIEHCLLKLG bmy_13550T0/1-1117 PAAGEKQLAM CLQRLEKTLS STKNRALLHI AKLEEASSWT AIEHCLLKLG ENSP00000377686/1-989 PAAGEKQLAM CLQRLEKTLS STKNRALLHI AKLEEASSWT AIEHSLLKLG BACU007026/1-974 PAAGEKQLAM CLQRLEKTLS STKNRALLHI AKLEEASSWT AIEHCLLKLG ENSBTAP00000028616/1-989 PAAGEKQLAM CLQRLEKTLS STKNRALLHI AKLEEASSWT AIEHCLLKLG 201 250 ENSTTRP00000016015/1-955 EILANLSSPQ LRSQAEQCGT LIRSIPTMLA VHSEQLPHTG FPTDHAV-LL bmy_13550T0/1-1117 EILTSLSNPQ LRSQAEQCGT LVRSIPTMLS VHSEQLHKTG FPTVHAVVLL ENSP00000377686/1-989 EILANLSNPQ LRSQAEQCGT LIRSIPTMLS VHAEQMHKTG FPTVHAVILL BACU007026/1-974 EILASLSNPQ LRSQAEQCGT LIRSIPSMLS VHSEQLHKTG FPTVHAVVLL ENSBTAP00000028616/1-989 EILANLSNHQ LRSQAEQCGT LIRSIPTMLS VHSEQLHKTG FPTVHAVVLL 251 300 ENSTTRP00000016015/1-955 EGXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_13550T0/1-1117 EGTMNLTGET QPLVEQLMMV KRMQHIPTPL FVLEIWKACF VGLIESPEGT ENSP00000377686/1-989 EGTMNLTGET QSLVEQLTMV KRMQHIPTPL FVLEIWKACF VGLIESPEGT BACU007026/1-974 EGTMNLTGET QPLVEQLMMV KRMQHIPTPL FVLEIWKACF VGLIESPEGT ENSBTAP00000028616/1-989 EGTMNLTGET QPLVEQLMMV KRMQHIPTPL FVLEIWKACF VGLIESPEGT 301 350 ENSTTRP00000016015/1-955 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_13550T0/1-1117 GELKWTAFTF LKIPQVLVKL KKYSHGDKDF TEDVNSAFEF LLKLTPLLDK ENSP00000377686/1-989 EELKWTAFTF LKIPQVLVKL KKYSHGDKDF TEDVNCAFEF LLKLTPLLDK BACU007026/1-974 GELKWTAFTF LKIPQVLVKL KKYSHGD--- ---------- --KLTPLLDK ENSBTAP00000028616/1-989 GELKWTAFTF LKIPQVLVKL KKYSHGDKDF TEDVNTAFEF LLKLTPLLDK 351 400 ENSTTRP00000016015/1-955 XXXXX----- ---------- ---------- ---------- ---------- bmy_13550T0/1-1117 ADQRCKYEVP CSPRCTGRSS GSSPALCARS APGDRLLAPP LGRGRRQQPR ENSP00000377686/1-989 ADQRC----- ---------- ---------- ---------- ---------- BACU007026/1-974 ADQRC----- ---------- ---------- ---------- ---------- ENSBTAP00000028616/1-989 ADQRC----- ---------- ---------- ---------- ---------- 401 450 ENSTTRP00000016015/1-955 ---------- ---------- ---------- ---------- ---------- bmy_13550T0/1-1117 GCRAPKPLSL PSGPQNVLHP KGGRMLGRAS RLPLSNPCSM PRPPIIFFPH ENSP00000377686/1-989 ---------- ---------- ---------- ---------- ---------- BACU007026/1-974 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000028616/1-989 ---------- ---------- ---------- ---------- ---------- 451 500 ENSTTRP00000016015/1-955 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX KADREHAPQL KSDENANIQP bmy_13550T0/1-1117 SCDCTNFLLQ ECSKQGLLSE ASTNNLMAKR KADREHAPQL KSDENANIQP ENSP00000377686/1-989 NCDCTNFLLQ ECGKQGLLSE ASVNNLMAKR KADREHAPQQ KSGENANIQP BACU007026/1-974 NCDCTNFLLQ ECSKQGLLSE ASTNNLMAKR KADREHAPQL KSDENANIQP ENSBTAP00000028616/1-989 NCDCTNFLLQ ECSKQGLLSE ASMNNLMAKR KADREHAPQL KSDENANIQP 501 550 ENSTTRP00000016015/1-955 NPGLILRAEP TVTNILKTMD ADHSKSPEGL LGVLGHMLSG KSLDLLLAAA bmy_13550T0/1-1117 NPGLILRAEP TVTNILKTMD ADHSKSPEGL LGVLGHMLSG KSLDLLLAAA ENSP00000377686/1-989 NIQLILRAEP TVTNILKTMD ADHSKSPEGL LGVLGHMLSG KSLDLLLAAA BACU007026/1-974 NPGLILRAEP TVTNILKTMD ADHSKSPEGL LGVLGHMLSG KSLDLLLAAA ENSBTAP00000028616/1-989 NPGLILRAEP TVTNILKTMD ADHSKSPEGL LGVLGHMLSG KSLDLLLAAA 551 600 ENSTTRP00000016015/1-955 AATGKLKSFA RKFINLNEFT THRSEESTKA ASVRALLFDI SFLMLCHVAQ bmy_13550T0/1-1117 AATGKLKSFA RKFINLNEFT THRSEESTKA ASVRALLFDI SFLMLCHVAQ ENSP00000377686/1-989 AATGKLKSFA RKFINLNEFT TYGSEESTKP ASVRALLFDI SFLMLCHVAQ BACU007026/1-974 AATGKLKSFA RKFINLNEFT THRSEESTKA ASVRALLFDI SFLMLCHVAQ ENSBTAP00000028616/1-989 AATGKLKSFA RKFINLNEFT THRSEESTKA ASVRALLFDI SFLMLCHVAQ 601 650 ENSTTRP00000016015/1-955 TYGSEVILSE SNTGGEVFFF ETWMQTCMPE EGKILNPDHP CFRPDSTKVE bmy_13550T0/1-1117 TYGSEVILSE SNTGGEVFFF ETWMQTCMPE EGKILNPDHP CFRPDSTKVE ENSP00000377686/1-989 TYGSEVILSE SRTGAEVPFF ETWMQTCMPE EGKILNPDHP CFRPDSTKVE BACU007026/1-974 TYGSEVILSE SNTGGEVFFF ETWMQTCMPE EGKILNPDHP CFRPDSTKVE ENSBTAP00000028616/1-989 TYGSEVILSE SNTGGEVFFF ETWMQTCMPE EGKILNPDHP CFRPDSTKVE 651 700 ENSTTRP00000016015/1-955 SLVALLNNSS EIKLVQMKWH EACLNISAAI LEILNAWENG VLAFESIQKI bmy_13550T0/1-1117 SLVALLNNSS EIKLVQMKWH EACLNISAAI LEILNAWENG VLAFESIQKI ENSP00000377686/1-989 SLVALLNNSS EMKLVQMKWH EACLSISAAI LEILNAWENG VLAFESIQKI BACU007026/1-974 SLVALLNNSS EIKLVQMKWH EACLNISAAI LEILNAWENG VLAFESIQKI ENSBTAP00000028616/1-989 SLVALLNNSS EIKLVQMKWH EACLNISAAI LEILNAWENG VLAFESIQKI 701 750 ENSTTRP00000016015/1-955 TDNIKG-VCS -AVCAA---L VHVRMLGLDE REKSLQMIRQ LAGPLYSEN- bmy_13550T0/1-1117 TDNIKGKVCS LAVCAVAWLV AHVRMLGLDE REKSLQMIRQ LAGPLYSENT ENSP00000377686/1-989 TDNIKGKVCS LAVCAVAWLV AHVRMLGLDE REKSLQMIRQ LAGPLFSENT BACU007026/1-974 TDNIKGKVCS LAVCAVAWLV AHVRMLGLDE REKSLQMIRQ LAGPLYSENT ENSBTAP00000028616/1-989 TDNIKGKVCS LAVCAVAWLV AHVRMLGLDE REKSLQMIRQ LAGPLYSENT 751 800 ENSTTRP00000016015/1-955 LQFYNERVVI MSSILEHMCA DVLQQTATQI KFPSTGMDTM PYWNLLPPKR bmy_13550T0/1-1117 LQFYNERVVI MSSILEHMCA DVLQQTATQI KFPSTGMDTM PYWNLLPPKR ENSP00000377686/1-989 LQFYNERVVI MNSILERMCA DVLQQTATQI KFPSTGVDTM PYWNLLPPKR BACU007026/1-974 LQFYNERVVI MSSILEHMCA DVLQQTATQI KFPSTGMDTM PYWNLLPPKR ENSBTAP00000028616/1-989 LQFYNERVVI MSSILEHMCA DVLQQTATQI KFPSTGMDTM PYWNLLPPKR 801 850 ENSTTRP00000016015/1-955 PIKEVLTDIF AKVLEKGWVD SRSIHIFDTL LHMGGVYWFC NNLIKELLKE bmy_13550T0/1-1117 PIKEVLTDIF AKVLEKGWVD SRSIHIFDTL LHMGGVYWFC NNLIKELLKE ENSP00000377686/1-989 PIKEVLTDIF AKVLEKGWVD SRSIHIFDTL LHMGGVYWFC NNLIKELLKE BACU007026/1-974 PIKEVLTDIF AKVLEKGWVD SRSIHIFDTL LHMGGVYWFC NNLIKELLKE ENSBTAP00000028616/1-989 PIKEVLTDIF AKVLEKGWVD SRSIHIFDTL LHMGGVYWFC NNLIKELLKE 851 900 ENSTTRP00000016015/1-955 TRKEHTLRAV ELLYSIFCLD MQQVTLVLLG HILPGLLTDS SKWHSLMDPP bmy_13550T0/1-1117 TRKEHTLRAV ELLYSIFCLD MQQVTLVLLG HILPGLLTDS SKWHSLMDPP ENSP00000377686/1-989 TRKEHTLRAV ELLYSIFCLD MQQVTLVLLG HILPGLLTDS SKWHSLMDPP BACU007026/1-974 TRKEHTLRAV ELLYSIFCLD MQQVTLVLLG HILPGLLTDS SKWHSLMDPP ENSBTAP00000028616/1-989 TRKEHTLRAV ELLYSVFCLD MQQATLVLLG HILPGLLTDS SKWHSLMDPP 901 950 ENSTTRP00000016015/1-955 GTALAKLAVW CALSSYSSHK GQASSRQKKR QREDIEDYIS LFPLDDMQPS bmy_13550T0/1-1117 GTALAKLAVW CALSSYSSHK GQASSRQKKR QREDIEDYIS LFPLDDMQPS ENSP00000377686/1-989 GTALAKLAVW CALSSYSSHK GQASTRQKKR HREDIEDYIS LFPLDDVQPS BACU007026/1-974 GTALAKLAVW CALSSYSSHK GQASSRQKKR QREDIEDYIS LFPLDDMQPS ENSBTAP00000028616/1-989 GTALAKLAVW CALSSYSSHK GQASSRQKKR HREDIEDYIS LFPLDDMQPS 951 1000 ENSTTRP00000016015/1-955 KLMRLLSSNE EDANILSSPT ---DRSMSSN LSASQLHTVN MRDPLNRVLA bmy_13550T0/1-1117 KLMRLLSSNE EDANILSSPS ECVDRGRAGC FLSRELTPSE SCSASRWLVG ENSP00000377686/1-989 KLMRLLSSNE DDANILSSPT ---DRSMSSS LSASQLHTVN MRDPLNRVLA BACU007026/1-974 KLMRLLSSNE EDANILSSPT ---DRSMSSS LSASQLHTVN MRDPLNRVLA ENSBTAP00000028616/1-989 KLMRLLSSNE EDANILSSPT ---DRSMSSS LSASQLHTVN MRDPLNRVLA 1001 1050 ENSTTRP00000016015/1-955 NLFLLISSIL GSRTA----- -GPHTQFAQW FMEGCV---- ----DCLEQG bmy_13550T0/1-1117 EAVVGVCPIL SPTAALFPIL ERPEVAVDHS LRAEALLPRS HPSPACIVD- ENSP00000377686/1-989 NLFLLISSIL GSRTA----- -GPHTQFVQW FMEECV---- ----DCLEQG BACU007026/1-974 NLFLLISSIL GSRTA----- -GPHTQFVQW FMEDCV---- ----GCLEQG ENSBTAP00000028616/1-989 NLFLLISSIL GSRTA----- -GPHTQFVQW FMEECV---- ----DCLEQG 1051 1100 ENSTTRP00000016015/1-955 GRGSILQFM- --PFTTVSEL V-VSAMSSP- ---------- ---------- bmy_13550T0/1-1117 -PSPLLTAMS SVPWAQSVPL THSSGLPSPE TGPETWSRPG RVLGTAPRSS ENSP00000377686/1-989 GRGSVLQFM- --PFTTVSEL VKVSAMSSPK V--------- -VLAITDLSL BACU007026/1-974 GRGSILQFM- --PFTTVSEL VKVSAMSSPK V--------- -VLAITDLSL ENSBTAP00000028616/1-989 SRGSILQFM- --PFTTVSEL VKVSAMSSPK V--------- -VLAITDLSL 1101 1150 ENSTTRP00000016015/1-955 ---------- --------- bmy_13550T0/1-1117 CLESTLTPPA SLDVIASPC ENSP00000377686/1-989 PLGRQVAAKA IAAL----- BACU007026/1-974 PLGRQVAAKA IAAL----- ENSBTAP00000028616/1-989 PLGRQVAAKA IAAL-----