KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:36:22 2014 Check: 00 .. Name: bmy_08056T0/1-1508 Len: 1536 Check: 697 Weight: 1.00 Name: ENSTTRP00000009852/1-1464 Len: 1536 Check: 1468 Weight: 1.00 Name: ENSP00000304408/1-1466 Len: 1536 Check: 7652 Weight: 1.00 Name: ENSBTAP00000028617/1-1466 Len: 1536 Check: 1735 Weight: 1.00 // 1 50 bmy_08056T0/1-1508 MTSFVQKGTW LLFALLHPTV ILAQQEVVEG GCSHLGQSYA DRDVWKPEPC ENSTTRP00000009852/1-1464 MMSFVQKGIW LLFALLHPTV ILAQQEVVEG GCSHLGQSYA DRDVWKPEPC ENSP00000304408/1-1466 MMSFVQKGSW LLLALLHPTI ILAQQEAVEG GCSHLGQSYA DRDVWKPEPC ENSBTAP00000028617/1-1466 MMSFVQKGTW LLFALLHPTV ILAQQEAVDG GCSHLGQSYA DRDVWKPEPC 51 100 bmy_08056T0/1-1508 QICVCDSGSV LCDDIICDDQ ELDCPNPEIP FGECCAVCPQ PPTAPTRPPN ENSTTRP00000009852/1-1464 QICVCDSGSV LCDDIICDDQ ELDCPNPEIP FGECCAVCPQ PPTAPTRPPT ENSP00000304408/1-1466 QICVCDSGSV LCDDIICDDQ ELDCPNPEIP FGECCAVCPQ PPTAPTRPPN ENSBTAP00000028617/1-1466 QICVCDSGSV LCDDIICDDQ ELDCPNPEIP FGECCAVCPQ PPTAPTRPPN 101 150 bmy_08056T0/1-1508 GHGPQGPKGD PGPPGIPGRN GDPGLPGLPG SPGSPGPPGI CESCPTGNQN ENSTTRP00000009852/1-1464 GQGPQGPKGD PGPPGIPGRN GDPGIPGLPG SPGSPGPPGI CESCPTGSQN ENSP00000304408/1-1466 GQGPQGPKGD PGPPGIPGRN GDPGIPGQPG SPGSPGPPGI CESCPTGPQN ENSBTAP00000028617/1-1466 GQGPQGPKGD PGPPGIPGRN GDPGPPGSPG SPGSPGPPGI CESCPTGGQN 151 200 bmy_08056T0/1-1508 YSPQYEAYDV KSGVAGGGLT GYPGPAGPPG PPGPPGASGH PGSPGSPGYQ ENSTTRP00000009852/1-1464 YSPQYEAYDV KSGVP-GGIT GYPGPPGPPG PPGPPGTSGH PGSPGAPGYQ ENSP00000304408/1-1466 YSPQYDSYDV KSGVAVGGLA GYPGPAGPPG PPGPPGTSGH PGSPGSPGYQ ENSBTAP00000028617/1-1466 YSPQYEAYDV KSGVAGGGIA GYPGPAGPPG PPGPPGTSGH PGAPHLKAWQ 201 250 bmy_08056T0/1-1508 GPPGEPGQAG PSGPPGPPGA IGPLGPAGKD GESGRPGRPG ERGLPGPPGV ENSTTRP00000009852/1-1464 GPPGEPGQAG PAGPPGSPGA IGPLGPAGKD GESGRPGRPG ERGLPGPPGI ENSP00000304408/1-1466 GPPGEPGQAG PSGPPGPPGA IGPSGPAGKD GESGRPGRPG ERGLPGPPGI ENSBTAP00000028617/1-1466 KPPQQSTSYS PIGPPGPPGA IGPSGPAGKD GESGRPGRPG ERGFPGPPGM 251 300 bmy_08056T0/1-1508 KGPAGMPGFP GMKGHRILIF LLLLSISKGF DGRNGEKGEQ GAPGLKGENG ENSTTRP00000009852/1-1464 KGPTGMPGFP GMKGHR---- --------GF DGRNGEKGDQ GAPGLKGENG ENSP00000304408/1-1466 KGPAGIPGFP GMKGHR---- --------GF DGRNGEKGET GAPGLKGENG ENSBTAP00000028617/1-1466 KGPAGMPGFP GMKGHR---- --------GF DGRNGEKGET GAPGLKGENG 301 350 bmy_08056T0/1-1508 LPGENGSPGA MGPRGPAGER GRPGLPGAAG ARGNDGARGS DGQPGPPGPP ENSTTRP00000009852/1-1464 LPGENGSPGA MGPRGPAGER GRPGLPGAAG ARGNDGARGS DGQPGPPGPP ENSP00000304408/1-1466 LPGENGAPGP MGPRGAPGER GRPGLPGAAG ARGNDGARGS DGQPGPPGPP ENSBTAP00000028617/1-1466 VPGENGAPGP MGPRGAPGER GRPGLPGAAG ARGNDGARGS DGQPGPPGPP 351 400 bmy_08056T0/1-1508 GTAGFPGSPG AKGEVGPAGS PGSSGSPGQR GEPGPQGHAG APGLPGPPGN ENSTTRP00000009852/1-1464 GTAGFPGSPG AKGEVGPAGS PGSSGSPGQR GEPGPQGHAG APGPPGPPGS ENSP00000304408/1-1466 GTAGFPGSPG AKGEVGPAGS PGSNGAPGQR GEPGPQGHAG AQGPPGPPGI ENSBTAP00000028617/1-1466 GTAGFPGSPG AKGEVGPAGS PGSSGAPGQR GEPGPQGHAG APGPPGPPGS 401 450 bmy_08056T0/1-1508 NGSPGGKGEM GPAGIPGAPG LIGARGPPGP SGTNGAPGQR GAAGEPGKNG ENSTTRP00000009852/1-1464 NGSPGGKGEM GPAGIPGAPG LIGARGPPGP SGTNGAPGQR GAAGEPGKNG ENSP00000304408/1-1466 NGSPGGKGEM GPAGIPGAPG LMGARGPPGP AGANGAPGLR GGAGEPGKNG ENSBTAP00000028617/1-1466 NGSPGGKGEM GPAGIPGAPG LIGARGPPGP PGTNGVPGQR GAAGEPGKNG 451 500 bmy_08056T0/1-1508 AKGEPGPRGE RGEAGSPGIP GLKGEDGKDG SPGEPGANGL PGAAGERGMP ENSTTRP00000009852/1-1464 AKGEPGPRGE RGEAGSPGIP GLKGEDGKDG SPGEPGANGL PGAAGERGMP ENSP00000304408/1-1466 AKGEPGPRGE RGEAGIPGVP GAKGEDGKDG SPGEPGANGL PGAAGERGAP ENSBTAP00000028617/1-1466 AKGDPGPRGE RGEAGSPGIA GPKGEDGKDG SPGEPGANGL PGAAGERGVP 501 550 bmy_08056T0/1-1508 GFRGPTGANG LPGEKGPPGE RGGPGPAGPR GVAGEPGRDG LPGGPGLRGM ENSTTRP00000009852/1-1464 GFRGPAGANG LPGEKGPPGE RGGPGPAGSR GAPGEPGRDG LPGGPGLRGM ENSP00000304408/1-1466 GFRGPAGPNG IPGEKGPAGE RGAPGPAGPR GAAGEPGRDG VPGGPGMRGM ENSBTAP00000028617/1-1466 GFRGPAGANG LPGEKGPPGD RGGPGPAGPR GVAGEPGRDG LPGGPGLRGI 551 600 bmy_08056T0/1-1508 PGSPGGPGSD GKPGPPGSQG ESGRPGPPGS PGSRGQPGVM GFPGPKGNDG ENSTTRP00000009852/1-1464 PGSPGGPGSD GKPGPPGSQG ETGRPGPPGS PGSRGQPGVM GFPGPKGNDG ENSP00000304408/1-1466 PGSPGGPGSD GKPGPPGSQG ESGRPGPPGP SGPRGQPGVM GFPGPKGNDG ENSBTAP00000028617/1-1466 PGSPGGPGSD GKPGPPGSQG ETGRPGPPGS PGPRGQPGVM GFPGPKGNDG 601 650 bmy_08056T0/1-1508 APGKNGERGS PGGPGLQGPA GKNGETGPQG PPGPTGPGGD KGDTGPPGPQ ENSTTRP00000009852/1-1464 APGKNGERGS PGGPGPQGPA GKNGETGPQG PPGPTGPGGD KGDIGSPGPP ENSP00000304408/1-1466 APGKNGERGG PGGPGPQGPP GKNGETGPQG PPGPTGPGGD KGDTGPPGPQ ENSBTAP00000028617/1-1466 APGKNGERGG PGGPGPQGPA GKNGETGPQG PPGPTGPSGD KGDTGPPGPQ 651 700 bmy_08056T0/1-1508 GLQGLPGTSG PPGENGKPGE PGPKGEAGAP GTPGGKGYSI FLLQGDSGAP ENSTTRP00000009852/1-1464 GLQGLPGTGG PPGENGKPGE PGPKGEAGAP GIPGGK---- ----GDSGAP ENSP00000304408/1-1466 GLQGLPGTGG PPGENGKPGE PGPKGDAGAP GAPGGK---- ----GDAGAP ENSBTAP00000028617/1-1466 GLQGLPGTSG PPGENGKPGE PGPKGEAGAP GIPGGK---- ----GDSGAP 701 750 bmy_08056T0/1-1508 GERGPTGPAG PPGPRGGTGP PGSEGGKGAA GSPGPPGNAG SPGLQGMPGE ENSTTRP00000009852/1-1464 GERGPTGPAG PPGPRGGTGP PGSEGGKGPA GPPGPPGNAG SPGLQGMPGE ENSP00000304408/1-1466 GERGPPGLAG APGLRGGAGP PGPEGGKGAA GPPGPPGAAG TPGLQGMPGE ENSBTAP00000028617/1-1466 GERGPPGAGG PPGPRGGAGP PGPEGGKGAA GPPGPPGSAG TPGLQGMPGE 751 800 bmy_08056T0/1-1508 RGGPGGPGPK GDKGEPGSSG VDGAPGKDGP RGPTGPIGPP GPAGQPGDKG ENSTTRP00000009852/1-1464 RGGPGGPGPK GDKGEPGSSG VDGAPGKDGP RGPTGPIGPP GPAGQPGDKG ENSP00000304408/1-1466 RGGLGSPGPK GDKGEPGGPG ADGVPGKDGP RGPTGPIGPP GPAGQPGDKG ENSBTAP00000028617/1-1466 RGGPGGPGPK GDKGEPGSSG VDGAPGKDGP RGPTGPIGPP GPAGQPGDKG 801 850 bmy_08056T0/1-1508 ESGAPGLPGI AGPRGGPKLY KVREVNMGHQ DLPASLVLLA RTVSLVVKVK ENSTTRP00000009852/1-1464 ESGAPGLPGI AGPRGGPG-E RGEHGPPGPA GFPGA---PG QNGEPGGKGE ENSP00000304408/1-1466 EGGAPGLPGI AGPRGSPG-E RGETGPPGPA GFPGA---PG QNGEPGGKGE ENSBTAP00000028617/1-1466 ESGAPGVPGI AGPRGGPG-E RGEQGPPGPA GFPGA---PG QNGEPGAKGE 851 900 bmy_08056T0/1-1508 EALLVRKVKE ALLELQGPPE VLGLPVPLVP QVSKVNVAVL VVLVLLASLV ENSTTRP00000009852/1-1464 RGAPGEKGEG GPPGIAGPPG SAGPSGAPGP PGVKGERGSP GGPGAAGFPG ENSP00000304408/1-1466 RGAPGEKGEG GPPGVAGPPG GSGPAGPPGP QGVKGERGSP GGPGAAGFPG ENSBTAP00000028617/1-1466 RGAPGEKGEG GPPGAAGPAG GSGPAGPPGP QGVKGERGSP GGPGAAGFPG 901 950 bmy_08056T0/1-1508 VVVFLVLLAI MVTQAPQAPV VLQAKMAPQV QLVVMVLLAA LGCLDQRVML ENSTTRP00000009852/1-1464 ARGPIGPPGS NGNPGPPGAG GPPGKDGPPG PAGNNGAPGS PGVSGPKGDA ENSP00000304408/1-1466 ARGLPGPPGS NGNPGPPGPS GSPGKDGPPG PAGNTGAPGS PGVSGPKGDA ENSBTAP00000028617/1-1466 GRGPPGPPGS NGNPGPPGSS GAPGKDGPPG PPGSNGAPGS PGISGPKGDS 951 1000 bmy_08056T0/1-1508 DNRVRRDHLA PRAFREFQAH LDLQGLLEHE VLQAHQACQV VGAAPAHRAP ENSTTRP00000009852/1-1464 GQPGEKGSPG AQGPPGAPGP LGIIGVPGAR GLAGPPGMTG PAGSRGPQGP ENSP00000304408/1-1466 GQPGEKGSPG AQGPPGAPGP LGIAGITGAR GLAGPPGMPG PRGSPGPQGV ENSBTAP00000028617/1-1466 GPPGERGAPG PQGPPGAPGP LGIAGLTGAR GLAGPPGMPG ARGSPGPQGI 1001 1050 bmy_08056T0/1-1508 RVKMGNQELV VSMENVVLLE PRVFLVWLVQ LVNLEEMETL DQMVCQAEMD ENSTTRP00000009852/1-1464 KGESGKPGLS GLNGERGPPG AQ-------G LPGLAGAAGE PGRDGNPGSD ENSP00000304408/1-1466 KGESGKPGAN GLSGERGPPG PQ-------G LPGLAGTAGE PGRDGNPGSD ENSBTAP00000028617/1-1466 KGENGKPGPS GQNGERGPPG PQ-------G LPGLAGTAGE PGRDGNPGSD 1051 1100 bmy_08056T0/1-1508 LLVARVTVV- ---------- --------KM ALLAPLVLLV IQARLALSVQ ENSTTRP00000009852/1-1464 GLPGRDGAPG SKGDRGENGS PGPPGAPGHP GPPGPVGAAG KSGDRGETGP ENSP00000304408/1-1466 GLPGRDGSPG GKGDRGENGS PGAPGAPGHP GPPGPVGPAG KSGDRGESGP ENSBTAP00000028617/1-1466 GLPGRDGAPG AKGDRGENGS PGAPGAPGHP GPPGPVGPAG KSGDRGETGP 1101 1150 bmy_08056T0/1-1508 LERVVTEEKL ALLVLLVPQV LLVQEVLLVP KAHVVTKVKR VNVVLMASKD ENSTTRP00000009852/1-1464 AGPSGAPGPV GSRGPPGPQ- --------GP RGDKGETGER GANGIKGHRG ENSP00000304408/1-1466 AGPAGAPGPA GSRGAPGPQ- --------GP RGDKGETGER GAAGIKGHRG ENSBTAP00000028617/1-1466 AGPSGAPGPA GSRGPPGPQ- --------GP RGDKGETGER GAMGIKGHRG 1151 1200 bmy_08056T0/1-1508 IADSLVTQVP QVPRVPLVTK VQSVV----- ---QDLQAPE YVPQKDIGRD ENSTTRP00000009852/1-1464 FPGN-----P GAPGSPGPSG HQGAVGSPGP AGPRGPVGPS GPPGKDGTSG ENSP00000304408/1-1466 FPGN-----P GAPGSPGPAG QQGAIGSPGP AGPRGPVGPS GPPGKDGTSG ENSBTAP00000028617/1-1466 FPGN-----P GAPGSPGPAG HQGAVGSPGP AGPRGPVGPS GPPGKDGASG 1201 1250 bmy_08056T0/1-1508 LLDPVGPLAK MEQVDTLVPS DHQGLEVTEA KEDLRNTLQY FKTEIGSPGH ENSTTRP00000009852/1-1464 HPGPIGPPG- --------PR GNRGERGSE- ---------- -----GSPGH ENSP00000304408/1-1466 HPGPIGPPG- --------PR GNRGERGSE- ---------- -----GSPGH ENSBTAP00000028617/1-1466 HPGPIGPPG- --------PR GNRGERGSE- ---------- -----GSPGH 1251 1300 bmy_08056T0/1-1508 PGQPGPPGPP GAPGPCCGG- GVAAIAGIGG EKSGGFAPYY GDEPMDFKIN ENSTTRP00000009852/1-1464 PGQPGPPGPP GVPGPCCPG- GPSGIIGIGG EKSGGFAPYY GDEPMDFKIN ENSP00000304408/1-1466 PGQPGPPGPP GAPGPCCGGV GAAAIAGIGG EKAGGFAPYY GDEPMDFKIN ENSBTAP00000028617/1-1466 PGQPGPPGPP GAPGPCCGAG GVAAIAGVGA EKAGGFAPYY GDEPIDFKIN 1301 1350 bmy_08056T0/1-1508 TDEIMTSLKS VNGQIESLLS PDGSRKNPAR NCRDLKFCHP ELKSGEYWVD ENSTTRP00000009852/1-1464 TDEIMTSLKS VNGQIESLLS PDGSRKNPAR NCRDLKFCHP ELKSGEYWVD ENSP00000304408/1-1466 TDEIMTSLKS VNGQIESLIS PDGSRKNPAR NCRDLKFCHP ELKSGEYWVD ENSBTAP00000028617/1-1466 TDEIMTSLKS VNGQIESLIS PDGSRKNPAR NCRDLKFCHP ELQSGEYWVD 1351 1400 bmy_08056T0/1-1508 PNQGCKMDAI KVYCNMETGE TCINASPLTV PRKNWWTNSA AEKKHVWFGE ENSTTRP00000009852/1-1464 PNQGCKMDAI KVYCNMETGE TCINASPLTV PRKNWWTNSA AEKKHVWFGE ENSP00000304408/1-1466 PNQGCKLDAI KVFCNMETGE TCISANPLNV PRKHWWTDSS AEKKHVWFGE ENSBTAP00000028617/1-1466 PNQGCKLDAI KVYCNMETGE TCISASPLTI PQKNWWTDSG AEKKHVWFGE 1401 1450 bmy_08056T0/1-1508 SMDGGFQFSY GNPELPEDVL DVQLAFLRLL SSQASQNITY HCKNSIAYMD ENSTTRP00000009852/1-1464 SMDGGFQFSY GNPELPEDVL DVQLAFLRLL SSQASQNITY HCKNSIAYMD ENSP00000304408/1-1466 SMDGGFQFSY GNPELPEDVL DVHLAFLRLL SSRASQNITY HCKNSIAYMD ENSBTAP00000028617/1-1466 SMEGGFQFSY GNPELPEDVL DVQLAFLRLL SSRASQNITY HCKNSIAYMD 1451 1500 bmy_08056T0/1-1508 HASGNVKKAL RLMGSNEGEF KAEGNGKFTY SVLEDGCTKH TGEWGKTVFE ENSTTRP00000009852/1-1464 HASGNVKKAL RLMGSNDGEF KAEGNGKFTY SVLEDGCTKH TGEWGKTVFE ENSP00000304408/1-1466 QASGNVKKAL KLMGSNEGEF KAEGNSKFTY TVLEDGCTKH TGEWSKTVFE ENSBTAP00000028617/1-1466 HASGNVKKAL KLMGSNEGEF KAEGNSKFTY TVLEDGCTKH TGEWGKTVFQ 1501 1550 bmy_08056T0/1-1508 YRTRKAVRLP IVDIAPYDIG GPDQEFGVDV GPVCFL ENSTTRP00000009852/1-1464 YRTRKAVRLP IVDIAPYDIG GPDQEFGVDV GPVCFL ENSP00000304408/1-1466 YRTRKAVRLP IVDIAPYDIG GPDQEFGVDV GPVCFL ENSBTAP00000028617/1-1466 YQTRKAVRLP IVDIAPYDIG GPDQEFGADI GPVCFL