KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:36:24 2014 Check: 00 .. Name: ENSTTRP00000001623/1-1617 Len: 1667 Check: 8566 Weight: 1.00 Name: bmy_02464T0/1-1030 Len: 1667 Check: 9702 Weight: 1.00 Name: ENSP00000160373/1-1663 Len: 1667 Check: 8770 Weight: 1.00 Name: ENSBTAP00000028619/1-1590 Len: 1667 Check: 469 Weight: 1.00 Name: BACU016483/1-945 Len: 1667 Check: 5848 Weight: 1.00 // 1 50 ENSTTRP00000001623/1-1617 ---------- ---------- -------KKD FDVDNLSKSE LRMLLSVMEG bmy_02464T0/1-1030 ---------- ---------- ---------- ---------- ---------- ENSP00000160373/1-1663 MATDGASCEP DLSRAPEDAA GAAAEAAKKE FDVDTLSKSE LRMLLSVMEG ENSBTAP00000028619/1-1590 ---------- ---------- ---------- ---------- ---------- BACU016483/1-945 ---------- ---------- ---------- ---------- ---------- 51 100 ENSTTRP00000001623/1-1617 ELEARDLVIE ALRARRKEVF IQERYGRFNL NDPFLALQRD YEAGAGDKEK bmy_02464T0/1-1030 ---------- ---------- ---------- ---------- ---------- ENSP00000160373/1-1663 ELEARDLVIE ALRARRKEVF IQERYGRFNL NDPFLALQRD YEAGAGDKEK ENSBTAP00000028619/1-1590 ---------- ---ARRKEVF IQERYGRFNL NDPFLALQRD YEAGASDKEK BACU016483/1-945 ---------- ---------- ---------- ---------- ---------- 101 150 ENSTTRP00000001623/1-1617 KPVCTNPLSI LEAVMTHCRK MQERMSTQLA AAESRQKKLE MEKLQLQALE bmy_02464T0/1-1030 ---------- ---------- ---------- ---------- MEKLQLQALE ENSP00000160373/1-1663 KPVCTNPLSI LEAVMAHCKK MQERMSAQLA AAESRQKKLE MEKLQLQALE ENSBTAP00000028619/1-1590 KPVCTNPLSI LEAVMAHCRK MQERMSTQLA AAESRQKKLE MEKLQLQALE BACU016483/1-945 ---------- ---------- ---------- ---------- ---------- 151 200 ENSTTRP00000001623/1-1617 QEHKKLATRL EEERGKNKHV VLMLVKECKQ LSGKVLEEAQ KLEEVMAKLE bmy_02464T0/1-1030 QEHKKLATRL EEERGKNKHV VLMLVKECKQ LSGKVLEEAQ KLEEVMAKLE ENSP00000160373/1-1663 QEHKKLAARL EEERGKNKQV VLMLVKECKQ LSGKVIEEAQ KLEDVMAKLE ENSBTAP00000028619/1-1590 QEHKKLAARL EEERGKNKHV VLMLVKECKQ LSGKVLEEAQ KLEEVMAKLE BACU016483/1-945 ---------- ---------- ---------- ---------- ---------- 201 250 ENSTTRP00000001623/1-1617 EEKKKTSALE EELAAEKRRS TEMEAQMEKQ LSEFDTEREQ LRAKLHREEA bmy_02464T0/1-1030 EEKKKTSALE EELAAEKRRS TEMEAQMEKQ LSEFDTEREQ LRAKLHREEA ENSP00000160373/1-1663 EEKKKTNELE EELSAEKRRS TEMEAQMEKQ LSEFDTEREQ LRAKLNREEA ENSBTAP00000028619/1-1590 EEKKKTSALE EELATEKRRS TEMEAQMEKQ LSEFDTEREQ LRAKLHREEA BACU016483/1-945 ---------- ---------- ---------- ---------- ---------- 251 300 ENSTTRP00000001623/1-1617 HTTDLKEEID KMKKMIEQLK -GNDSKPSLS LPRKTKDRRL VSISVGTEGL bmy_02464T0/1-1030 HTTDLKEEID KMKKMIEQLK RGNDSKPSLS LPRKTKDRRL VSISVGTEGP ENSP00000160373/1-1663 HTTDLKEEID KMRKMIEQLK RGSDSKPSLS LPRKTKDRRL VSISVGTEGT ENSBTAP00000028619/1-1590 HTTDLKEEID KMKKMIEQLK KGNDSKPSLS LPRKTKDRRL VSISVATEGP BACU016483/1-945 ---------- ---------- ---------- ---------- ---------- 301 350 ENSTTRP00000001623/1-1617 MTRSVACQTD LAIESTDPVK KSPLTVPVKP AMGSPLVSAN AKGNACASAD bmy_02464T0/1-1030 MTRSVACQTD LVIESTDPVK KSPLTVPVKP AMGSPLVSAN AKGNACASAD ENSP00000160373/1-1663 VTRSVACQTD LVTENADHMK KLPLTMPVKP STGSPLVSAN AKGSVCTSAT ENSBTAP00000028619/1-1590 MTRSVACQTD LVVETAEPLK KLPLSVPVKP ATGSPLVSAG AKGNACPSAA BACU016483/1-945 ---------- ---------- ---------- ---------- ---------- 351 400 ENSTTRP00000001623/1-1617 LVRPGIDRQA SHGDLTGSSL PTVPPPSANR IEENGPSSGS TPDLTSSASP bmy_02464T0/1-1030 LVRPGIDRQA SHGDLTGSSL PTVPPPSANR IEENGPSSGS TPDLTSSASP ENSP00000160373/1-1663 MARPGIDRQA SYGDLIGASV PAFPPPSANK IEENGPSTGS TPDPTSSTPP ENSBTAP00000028619/1-1590 SVRPGIERQV SHGDLIGSSL PTVPPPSANR IEENGPSTGS TPDLTSSPSP BACU016483/1-945 ---------- ---------- ---------- ---------- ---------- 401 450 ENSTTRP00000001623/1-1617 LPSTAAPAAG -TP------- -APPPHSLHS PCANTPLHPG LNPRIQAARF bmy_02464T0/1-1030 LPSTAAPAAG HTP------- -APPPHSLHS PCANAPLHPG LNPRIQAARF ENSP00000160373/1-1663 LPSNAAPPTA QTPGIAPQNS QAPPMHSLHS PCANTSLHPG LNPRIQAARF ENSBTAP00000028619/1-1590 LPSAVSPASG HTP------- -APPPHSLHS PSASAPLHPG LNPRIQAARF BACU016483/1-945 ---------- ---------- ---------- ---------- ---------- 451 500 ENSTTRP00000001623/1-1617 RFQG-NANDP DQNGNTTQSP PSRDVSPTSR DNLVAKQLAR NTVTQALSRF bmy_02464T0/1-1030 RFQG-NANDP DQNGNTTQSP PSRDVSPTSR DNLVAKQLAR NTVTQALSRF ENSP00000160373/1-1663 RFQG-NANDP DQNGNTTQSP PSRDVSPTSR DNLVAKQLAR NTVTQALSRF ENSBTAP00000028619/1-1590 RFQGSNANDP DQNGNTTQSP PSREVSPTSR DNLVAKQLAR NTVTQALSRF BACU016483/1-945 ---------- ---------- ---------- ---------- ---------- 501 550 ENSTTRP00000001623/1-1617 TSPPAGAPPR PGVPPTGDVG TYPPVGRTSL KTPGAARVDR GNPPPIPPKK bmy_02464T0/1-1030 TSPPAGAPPR PGVPPAGDVG TYPPVGRTSL KTPGAARVDR GNPPPIPPKK ENSP00000160373/1-1663 TSPQAGAPSR PGVPPTGDVG THPPVGRTSL KTHGVARVDR GNPPPIPPKK ENSBTAP00000028619/1-1590 TSPPAGAPPR PGASPTGDVG TYPPVGRTSL KTPGGARVDR GNPPPIPPKK BACU016483/1-945 ---------- ---------- ---------- ---------- ---------- 551 600 ENSTTRP00000001623/1-1617 PGLSHTPSPP HPQLKVVMDS SRASNAGAKV DNKTVASPPS SLPQGNRVIS bmy_02464T0/1-1030 PGLSHTPSPP HPQLKVVMDS SRASSTGAKV DNKTVASPPS SLPQGNRVIS ENSP00000160373/1-1663 PGLSQTPSPP HPQLKVIIDS SRASNTGAKV DNKTVASTPS SLPQGNRVIN ENSBTAP00000028619/1-1590 PGLSQTPSPP HPQLKVIMDS SRASSTGIKA DNKTVASPPS SLPQGNRVIN BACU016483/1-945 ---------- ---------- ---------- ---------- ---------- 601 650 ENSTTRP00000001623/1-1617 EENLLKSSSP QLPPKPSIDL TVAPAGCAVS ALATSHVGAW PAETH-LNQP bmy_02464T0/1-1030 EENLLKPSSP QLPQKPSIDL TVAPAGCAVS ALATSQVGAW PAETPGLNQP ENSP00000160373/1-1663 EENLPKSSSP QLPPKPSIDL TVAPAGCAVS ALATSQVGAW PAATPGLNQP ENSBTAP00000028619/1-1590 EENLSKSSSP QLPPKPSIDL TVAPAGCAVS ALATSQVGAW PAETPGLNQP BACU016483/1-945 ---------- ---------- ---------- ---------- ---------- 651 700 ENSTTRP00000001623/1-1617 ACSESSLVIP TTIAFRSTIN PVXXXXXXXX XXXXXXXXXX XWSPSLTPLL bmy_02464T0/1-1030 ACSESSLVIP TTIAFRSSIN PVSASSCRAG ASDSLLVTAS GWSPSLTPLL ENSP00000160373/1-1663 ACSDSSLVIP TTIAFCSSIN PVSASSCRPG ASDSLLVTAS GWSPSLTPLL ENSBTAP00000028619/1-1590 ACSESSLVIP TTTAFRSSIN PVSASSRRAG ASDSLLVTAS GWSPSLTPLL BACU016483/1-945 ---------- ---------- ---------- ---------- ---------- 701 750 ENSTTRP00000001623/1-1617 MRGGPAPLAG RPTLLQQAAA QGNVTLLSML LNEEGLDINY SCEDGHSALY bmy_02464T0/1-1030 MSGGPAPLAG RPTLLQQAAA QGNVTLLSML LNEEGLDINY SCEDGHSALY ENSP00000160373/1-1663 MSGGPAPLAG RPTLLQQAAA QGNVTLLSML LNEEGLDINY SCEDGHSALY ENSBTAP00000028619/1-1590 MSGGPAPLAG RPTLLQQAAA QGNVTLLSML LNEEGLDINY SCEDGHSALY BACU016483/1-945 MSGGPAPLAG RPTLLQQAAA QGNVTLLSML LNEEGLDINY SCEDGHSALY 751 800 ENSTTRP00000001623/1-1617 SAAKDGHT-- -DCVRLLLNA EAQVNAADKN GFTPLCAAAA QGHFXXXXXX bmy_02464T0/1-1030 SAAKNGHT-- -DCVRLLLNA EAQVNAADKN GFTPLCAAAA QGHFKCVELL ENSP00000160373/1-1663 SAAKNGHT-- -DCVRLLLSA EAQVNAADKN GFTPLCAAAA QGHFECVELL ENSBTAP00000028619/1-1590 SAAKNGHTES IDCVRLLLNA EAQVNAADKN GFTPLCAAAA QGHFKCVELL BACU016483/1-945 SAAKNGRT-- -DCVRLLLNA EAQVNAADKN GFTPLCAAAA QGHFKCVELL 801 850 ENSTTRP00000001623/1-1617 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXDGWTP bmy_02464T0/1-1030 IAYDANINHA ADGGQTPLYL ACKNGNKECI KLLLEAGTDR SVKTRDGWTP ENSP00000160373/1-1663 ISYDANINHA ADGGQTPLYL ACKNGNKECI KLLLEAGTNR SVKTTDGWTP ENSBTAP00000028619/1-1590 IAYDANINHA ADGGQTPLYL ACKNGNKECI KLLLEAGTDR SVKTRDGWTP BACU016483/1-945 IAYDANINHA ADGGQTPLYL ACKNGNKECI QLLLEAGTDR SVKTRDGWTP 851 900 ENSTTRP00000001623/1-1617 VHAAVDTGNV DSLKLLMYHR APARGNSLH- EEPESGVFDL DGGEESREGT bmy_02464T0/1-1030 VHAAVDTGNV DSLKLLMYHR APAHGNSLH- EEPESGVFDL DGEEESREGT ENSP00000160373/1-1663 VHAAVDTGNV DSLKLLMYHR IPAHGNSFNE EESESSVFDL DGGEESPEGI ENSBTAP00000028619/1-1590 IHAAVDTGNV DSLKLLMYHR APAHGNKLQ- EEPGLAILDL DQEEEHHEGT BACU016483/1-945 VHAAVDTGNV DSLKLLMYHR APAHGNSLH- EEPESGVFDL DGGEESREGT 901 950 ENSTTRP00000001623/1-1617 SKPVVPADLI NHANSKGWTA AHIAASKGFK NCLQVLCRHG GLEPEKRDKC bmy_02464T0/1-1030 SKPVVPADLI NHADSKGWTA AHIAASKGFK NCLQVLCRHG GLEPEKRDKC ENSP00000160373/1-1663 SKPVVPADLI NHANREGWTA AHIAASKGFK NCLEILCRHG GLEPERRDKC ENSBTAP00000028619/1-1590 SKPVVPADLI NHADSEGWTA AHIAASKGFK NCLEVLCRHG GLEPERRDKC BACU016483/1-945 SKPVVPADLI NHADSKGWTA AHIAASKGFK NCLQVLCRHG GLEPEKRDKC 951 1000 ENSTTRP00000001623/1-1617 NRTAHDVATD DCKHLLENLN ALKIPLRISV GEIQPGNYGA DDFECENTIC bmy_02464T0/1-1030 NRTAHDVATD DCKHLLENLN ALKIPLRISV GEIQPGNYGA DDFECENTIC ENSP00000160373/1-1663 NRTVHDVATD DCKHLLENLN ALKIPLRISV GEIEPSNYGS DDLECENTIC ENSBTAP00000028619/1-1590 NRTAHDVATD DCKHLLENLN ALKIPLRISV GETEPGNCGA DDFECESTIC BACU016483/1-945 NRTAHDVATD DCKHLLENLN ALKIPLRISV GEIQSGNYGA DDFECENTIC 1001 1050 ENSTTRP00000001623/1-1617 ALNIRKQTSW DDFSKAVSQA LTNHFQAISS DGWWSLEDVT FNSTTDSSIG bmy_02464T0/1-1030 ALNVRKQTSW DDFSKAVSQA LTNHFQAISS DGWWSLEDVT FNSTTDSSIG ENSP00000160373/1-1663 ALNIRKQTSW DDFSKAVSQA LTNHFQAISS DGWWSLEDVT CNNTTDSNIG ENSBTAP00000028619/1-1590 ALNIRKQTSW DDFSKAVSQA LTNHFQAISS DGWWSLEDMT FSSTTDSSIG BACU016483/1-945 ALNIRKQTSW DDFSKAVSQA LTNHFQAISS DGWWSLEDVT FNSTTDSSIG 1051 1100 ENSTTRP00000001623/1-1617 LGASSVRSIT LGNVPWSAGQ SFTQSPWDFM RTNKAEQVTA LLSXXXXXXX bmy_02464T0/1-1030 LGASSVRSIT LGNVPWSAGQ SFTQSPWDFM RTNKAEQVTA LLSGPQEGCL ENSP00000160373/1-1663 LSARSIRSIT LGNVPWSVGQ SFAQSPWDFM RKNKAEHITV LLSGPQEGCL ENSBTAP00000028619/1-1590 LSASSVRSIT LGNVPWSAGQ SFTQSPWDFM RTNKAEQVTV LLSGPQEGCL BACU016483/1-945 LGASSVRSIT LGNVPWSAGQ SFTQSPWDFM RTNKAEQVTA LLSGPQEGCL 1101 1150 ENSTTRP00000001623/1-1617 XXXXXXXXXX XXXXXXXXXX VEQYHNVIFH GPEGSLQDYI AHQLALCMKH bmy_02464T0/1-1030 SSVTYASMIP LQMLQNYLRL VG-------- GPA------- ---------- ENSP00000160373/1-1663 SSVTYASMIP LQMMQNYLRL VEQYHNVIFH GPEGSLQDYI VHQLALCLKH ENSBTAP00000028619/1-1590 SSVTYASMIP LQMLQNYLRL VEQYHNVIFH GPEGSLQDYI AHQLALCLKH BACU016483/1-945 SSVTYASMIP LQMLQNYLRL VEQYHNVIFH GPEGSLQDYI AHQLALCMKH 1151 1200 ENSTTRP00000001623/1-1617 RQMAAGFPCE IVRAEVDTGF SKDQLVDLFI SSACLIPVKQ SPANKKIIII bmy_02464T0/1-1030 ---------- ---------- ---------- ---------- ---------- ENSP00000160373/1-1663 RQMAAGFSCE IVRAEVDAGF SKEQLLDLFI SSACLIPVKQ SPSKKKIIII ENSBTAP00000028619/1-1590 RQMAAGFPCE IVRAEVDADF SKEQLVDLFI SSACLIPVKQ SPANKKIIVI BACU016483/1-945 RQMAAGVPCE IVRAEVDTGF SKDQLVDLFI SSACLIPVKQ SPANKKIIII 1201 1250 ENSTTRP00000001623/1-1617 LENLEKSSLS ELLGDFLGPL ENRSTESPCT FQKGNRTSEC YYFHENCFLL bmy_02464T0/1-1030 ---------- ---------- ---------- ---------- ---------- ENSP00000160373/1-1663 LENLEKSSLS ELLRDFLAPL ENRSTESPCT FQKGNGLSEC YYFHENCFLM ENSBTAP00000028619/1-1590 LENLEKSSLS ELLGDFLGPL ENHSTESPCT FQKGNGMSEC YYFHENCFLM BACU016483/1-945 LENLEKSSLS ELLGDFLGPL ENRSTESPCS FQKGNGTSEC YYFHENCFLL 1251 1300 ENSTTRP00000001623/1-1617 GTIAKACLQG SDLLVQQHFR WVQLRWDGEP MQGLLQRFLR RKVVNKFRGQ bmy_02464T0/1-1030 ---------- ---------- ----KW---- --GLTLPALT RTLCSDL--- ENSP00000160373/1-1663 GTIAKACLQG SDLLVQQHFR WVQLRWDGEP MQGLLQRFLR RKVVNKFKGQ ENSBTAP00000028619/1-1590 GTIAKACLQG SDLLVQQHFR WVQLRWDGEP MQGLLQRFLR RKVVNKFRGQ BACU016483/1-945 GTIAKACLQG SDLLVQQHFR WVQLRWDGEP MQGLLQRFLR RKVVNKFRGQ 1301 1350 ENSTTRP00000001623/1-1617 VPSPCDPVCK TVDWALAVWR QLNSCLARLG TPEALLGPKY FLSCPVIPGH bmy_02464T0/1-1030 ---------- ---------- ---------- --------MT FLNSP-LPGQ ENSP00000160373/1-1663 APSPCDPVCK IVDWALSVWR QLNSCLARLG TPEALLGPKY FLSCPVVPGH ENSBTAP00000028619/1-1590 VPSPCDPVCK TVDWALAVWR QLNSCLARLG TPEALLGPQH FLSCPVVPGH BACU016483/1-945 VPSPCDPVCK TVDWALAVWR QLNSCLARLG TPEALLGPKY FLSCPVIPGH 1351 1400 ENSTTRP00000001623/1-1617 TQATVKWMSK LWNAVIAPRV QEAILSRASV KRQPSLGQTT --KNPSQGQQ bmy_02464T0/1-1030 ---------- ----LLVP-- ---------- ---------- ---------- ENSP00000160373/1-1663 AQVTVKWMSK LWNGVIAPRV QEAILSRASV KRQPGFGQTT AKRHPSQGQQ ENSBTAP00000028619/1-1590 TQATVKWMSK LWNAVIAPRV QEAILSRASV KRQPGLGQTT --KNPSQGQQ BACU016483/1-945 AQATVKWMSK LWNAVIAPRV QEAILSRASV KRQPSLGQTT --KNPSQGQQ 1401 1450 ENSTTRP00000001623/1-1617 AVVRAALSIL LNKAVLHGCP LQRAELDQHT ADFKGGSFPL SIVSSYNSCS bmy_02464T0/1-1030 ---------- ---------- ---------- ------SFSI SV-------- ENSP00000160373/1-1663 AVVKAALSIL LNKAVLHGCP LPRAELDQHT ADFKGGSFPL SIVSSYNTCN ENSBTAP00000028619/1-1590 AVVRAALSIL LNKAVLHGCP LQRAELDQHT ADFKGGSFPL SIVSSYSSCS BACU016483/1-945 AVVRAALSIL LNKAVLHGCP LQRAELDQHT ADFKGGSFPL SIVSSYNSCS 1451 1500 ENSTTRP00000001623/1-1617 KKK-ESGAWR KVSTSPRKKS GRFSSPTWNK PDLSEEGIKN KTILQLNCNR bmy_02464T0/1-1030 ---------- ---------- ---------- ---------- -TVIQVSIAR ENSP00000160373/1-1663 KKKGESGAWR KVNTSPRRKS GRFSLPTWNK PDLSTEGMKN KTISQLNCNR ENSBTAP00000028619/1-1590 KKK-ESGAWR KVSTSPRKKS GRFSSPTWNK PDLSEEGIKS NTILQLNCNR BACU016483/1-945 KKK-ESGAWR KVSTSPRKKS GRFSSPTWNK PDLSEEGIKN KTILQLNCNR 1501 1550 ENSTTRP00000001623/1-1617 NASLSKQKSL ENDLSLALNL DQRLSLGSDD EADLVTELQS MCSSKSESDI bmy_02464T0/1-1030 TQTL------ ---------- ---------- ---------- ---------- ENSP00000160373/1-1663 NASLSKQKSL ENDLSLTLNL DQRLSLGSDD EADLVKELQS MCSSKSESDI ENSBTAP00000028619/1-1590 NASLSNQKSL ENDLSLTLNL DQRLSLGSDD EADLVKELQS MCSSKSESDI BACU016483/1-945 NASLSKQKSL ENDLSLTLNL DQRLSLGSDD EADLVKELQS MCSSKSESDI 1551 1600 ENSTTRP00000001623/1-1617 SKIADSGDEL GRFDRSGNHP AFSATVNNPR MPVSQKEVSP LSSHQATECS bmy_02464T0/1-1030 ---------- ---------- ---------- ---------P VTCQVF---- ENSP00000160373/1-1663 SKIADSRDDL RMFDSSGNNP VLSATINNLR MPVSQKEVSP LSSHQTTECS ENSBTAP00000028619/1-1590 SKIADSRDDL RRFDSSGNNP VFSATVNNPR MPVSQKEVSP LSSHQTTECS BACU016483/1-945 SKIADSGDDL GRFDRSGNNP AFSATVNNPR MPVSQKEVSP LSSHQATECS 1601 1650 ENSTTRP00000001623/1-1617 NSKSKTELGV SRVKSFLPVP RSKVTQCSQN TKR-SSSSNT RQIEINNSKE bmy_02464T0/1-1030 ---------- ---------- ---------- ---------- ---------- ENSP00000160373/1-1663 NSKSKTELGV SRVKSFLPVP RSKVTQCSQN TKRSSSSSNT RQIEINNNSK ENSBTAP00000028619/1-1590 NSKSKTELGV SRVKSFLPVP RSKVTQCSQN TKRSSSSSNT RQIEINNNSE BACU016483/1-945 NSKSKTELGV SRVKSFLPVP RSKVTQCSQN TKRSSSSSNT RQIEINNSKE 1651 1700 ENSTTRP00000001623/1-1617 I---NLHKNE QVEKPNK bmy_02464T0/1-1030 ---------- ------- ENSP00000160373/1-1663 EVNWNLHKNE HLEKPNK ENSBTAP00000028619/1-1590 I--WNLRKNE QVEKSSK BACU016483/1-945 EI-------- -------