KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:36:25 2014 Check: 00 .. Name: ENSP00000262577/1-948 Len: 1036 Check: 3955 Weight: 1.00 Name: ENSBTAP00000028621/1-944 Len: 1036 Check: 7274 Weight: 1.00 Name: ENSTTRP00000014336/1-884 Len: 1036 Check: 1308 Weight: 1.00 Name: bmy_07606T0/1-523 Len: 1036 Check: 9268 Weight: 1.00 Name: BACU001483/1-1024 Len: 1036 Check: 4863 Weight: 1.00 // 1 50 ENSP00000262577/1-948 ---------- ----MEEKEI LRRQIRLLQG LIDDYKTLHG NAPAPGTPAA ENSBTAP00000028621/1-944 ---------- ----MEEKEQ LRRQIRLLQG LIDDYKSLHG SASAPGTSAA ENSTTRP00000014336/1-884 ---------- ----MEEKEQ LRRQIRLLQG LIDDYKNLHG NASAPGTSAA bmy_07606T0/1-523 -----MPLQG ILTDFTHPPV NGACAPVSSG LIDDYKNLHG NASAPGTSVA BACU001483/1-1024 MKSRGPGLAS RTPEMEEKEQ LRRQIRLLQG LIDDYKNLHG SASAPGTSAA 51 100 ENSP00000262577/1-948 ------SGWQ PPTYHSGRAF SARYPRPSRR GYSSHHGPSW RKKYSLVNRP ENSBTAP00000028621/1-944 LGTSTTSQWQ PPTYNSSRTF SARYPRPSRR GFSLNHGPAW RKKYSLVNRP ENSTTRP00000014336/1-884 ------SQWQ PPAYSSGRAF SARCPRLSRR GFSPNHGPVW RKKYSLVNRP bmy_07606T0/1-523 ------SQWQ PPTYSSGRAF SARYPRLSRR GFSPNHGPVW RKKYSLVNRP BACU001483/1-1024 ------SQWQ PPTYSSGRAF SARYPRLSRR GFSPNHGPVW RKKYSLVNRP 101 150 ENSP00000262577/1-948 PGPSDPPADH AVRPLHGARG GQPPVPQQHV LERQVQLSQG QNVVIKVKPP ENSBTAP00000028621/1-944 LGSSDPPGDG AAQPPLRAGS SQGPEPQEYI LERQVQLNPD QNMVIKIKPP ENSTTRP00000014336/1-884 LGSSDPPGDC AAQPPLGAGG SQGPEPQQYI LERQVQLSPA QNMVINVKPP bmy_07606T0/1-523 LGSSDPPGDC AAQPPLGAGG SQGPDPQQYI LERQVQLSPD QNMVIKVKPP BACU001483/1-1024 LGSSDPPGDC AAQPPPGAGG SQGPDRQQYI PERQVQLRPD QNMVIKVKPP 151 200 ENSP00000262577/1-948 SKSGSASASG AQRGSLEEFE ETPWSDQRPR EGEGEPPRGQ LQPSRPTRAR ENSBTAP00000028621/1-944 SKPGSASTAG VLRTSLEEYE DPPWNDHRPQ EGEGESSGAQ RQPSRQGRAK ENSTTRP00000014336/1-884 SKPGSAGTAG VLRGSLEEYG DAPWSNHRPQ EGEGELPGGQ QQPSRPGRAK bmy_07606T0/1-523 SKPGSAGTAG VLRGSLEEYG DPPWSSHRPQ EGEGEPPGGQ RQPLRPGRAK BACU001483/1-1024 SKPGSAGTAG VLRGSLEAYG DPPWSSHGPQ EGDSGPAGGQ RPPSRPGRAK 201 250 ENSP00000262577/1-948 GTCSVEDPLL VCQKEPGKPR MVKSVGSVGD SPREPRRTVS ESVIAVKASF ENSBTAP00000028621/1-944 GGCSAEDPLL VCQKEAGKPR VVKSVSSVSE NPLEPRRTVS ESAVAVRARV ENSTTRP00000014336/1-884 GSCSEEDPLL VCQKEPGKPR VVKSMSTVSS SPSEPRRMVG ESAVAARARF bmy_07606T0/1-523 GSCSEEDPLL VCQKEPGKPR LVKSMSAVSS SPSEPWRTVS ESAAAAKARF BACU001483/1-1024 GSCSEEDPLL VCRKEPGKPR LVKSLSAVGS SPSEPWRTVS ESAAAAKARF 251 300 ENSP00000262577/1-948 PSSALPPRTG VALGRKLGSH SVASCAPQLL GDRRVDAGHT DQPVPSGSVG ENSBTAP00000028621/1-944 LPSSLPQRGG MALGRKAGSH SVASSVTQLR GDGSANTGLS GPSAASSLVV ENSTTRP00000014336/1-884 PPSSPPQRGG TALGRKVGSQ PAANCGTQLL GDGRANAGHA DQSAASGLVA bmy_07606T0/1-523 VPPGPPQRGS TALGRKVGPH SVASCGAQLL GDGRANAGHA DQSAASGLVA BACU001483/1-1024 VAPGLPQRGG TALGRKVGSH SVASCGAQVR GDGRANAGHA GQSAASGLVA 301 350 ENSP00000262577/1-948 GPARPASGPR QAREASLVVT CRTNKFRKNN YKWVAASSKS PRVARRALSP ENSBTAP00000028621/1-944 GPARPAVGPR QTREPSVLVS CRTNKFQKNN YKWVAASAKS PRASRRALSP ENSTTRP00000014336/1-884 GPARPAAGPR QTREPLLLVS CRSNKFRQNN YKWVAASAKS PRAPRRALSP bmy_07606T0/1-523 GPARPAAGPR QTREPLLLVS CRTSKFRKND YKWVAASAKS PRAPRRALSP BACU001483/1-1024 GPARPAAGPR QTREPLLLVS CRTNKFRKND YKWVAASAKS PRAPRRALSP 351 400 ENSP00000262577/1-948 RVAAENVCKA SAGMANKVEK PQLIADPEPK PRKPATSSKP GSAPSKYKWK ENSBTAP00000028621/1-944 RAAAENVCKA PFAAAERTEK PQLKADPDAK PRRPAVSSVP GASPSKYKWK ENSTTRP00000014336/1-884 RAVAENVCKA PFSAAERTEK PQLRGDLDAK PRRSAAASVP GASPSKYKWK bmy_07606T0/1-523 RAVAENVCKA PFSAAERTEK PQLRADLDAK PRRSATASVP GASPSKYKWK BACU001483/1-1024 RAVAENVCKA PFSAAERTEK PQLRADLDAK PRRSATASVP GASPSKYKWK 401 450 ENSP00000262577/1-948 ASSPSASSSS SFRWQSEASS KDHASQLSPV LSRSPSGDRP AVGHSGLKPL ENSBTAP00000028621/1-944 ASSPSASSAS SFRWQSEVGS KDRASQLSPI PSRSPPADRR AVEPSSLQPV ENSTTRP00000014336/1-884 ASSPLASSAS SFRWQSEAGS KDHASQLSPV PSRFPPRDRP AVGPSSLKPL bmy_07606T0/1-523 ASSPSASSSS SFRWQSEAGS KDHASQLSPV PSRFPPGDRP AVGPSSLKPL BACU001483/1-1024 ASSPSASSSS SFRWQSEAGS KDHASQLSPV PSRFPPGDRS AVGPSSLKPL 451 500 ENSP00000262577/1-948 SGETPLSAYK VKSRTKIIRR RSSTSLPGDK KSGTSPAATA KSHLSLRRRQ ENSBTAP00000028621/1-944 FSETPLSAYK VKSRTKIIRR RGSASLPADK KSSPPPAAVA KSQFSLRRKQ ENSTTRP00000014336/1-884 FSETPLSAYK VKSRTKIIRR RGSASLPGDK KSSPPPATTA RSQFSLRRRQ bmy_07606T0/1-523 FSETPLSAYK VKSRTKIIRR RGSAR----- ---------- ---------- BACU001483/1-1024 FSESPLSAYK VKSRTKIIRR PGSASLPGDK KSSPPPAATT KSQFSLRRRQ 501 550 ENSP00000262577/1-948 ALRGKSSPVL KKTPNKGLVQ ---------- ------VTTH RLC------- ENSBTAP00000028621/1-944 ALRGKSSPVT KKTPNKGLMP ---------- ------VTKP RPC------- ENSTTRP00000014336/1-884 ALRGKSSPVL KKTPNKGLMQ ---------- ------VSRH RLC------- bmy_07606T0/1-523 ---------- ---------- ---------- ---------- ---------- BACU001483/1-1024 ALRGKSSPVL KKTPNKGLMQ DCVTEGTAQT GLAFGNALVD GQCPERAAPL 551 600 ENSP00000262577/1-948 -----RLPPS RAHLP----- ---------- TKEASSLHAV RTAPTSKVIK ENSBTAP00000028621/1-944 -----CLPPG RAYVP----- ---------- SKEASSLHGQ RPPPTSKVIR ENSTTRP00000014336/1-884 -----CLPPG RAHLP----- ---------- TKEASSLHGQ RTPPTSKVIK bmy_07606T0/1-523 -----CVSPP RPRVP----- ---------- ---------- ---------- BACU001483/1-1024 IVWSGRVSPP RSSAPSSGDA ASRWHGLCSG SSRASSLHGQ RNPPTSKVIK 601 650 ENSP00000262577/1-948 TRYRIVKKTP ASPLSAPPFP LSLPSWRARR LSLSRSLVLN RLRPVASGGG ENSBTAP00000028621/1-944 TRYRIVKKTP TSPLSTTPGP PALPSWRARR LSLSRSLALN TLRP-AT-GG ENSTTRP00000014336/1-884 TRYRIVKKTQ ASPLSPAPGP LAPPSWRALR LSLSRSLVLN GLRT-AS-GG bmy_07606T0/1-523 ---------- ---------- ---------- ---------- ---------- BACU001483/1-1024 TRYRIVKKTQ ASPLSTAPGP LAPPSWRALR LSLSRSLVLN GLRT-AAAGG 651 700 ENSP00000262577/1-948 KAQPGSPWWR SKGYRCIGGV LYKVSANKLS KTSGQP-SDA GSRPLLRTGR ENSBTAP00000028621/1-944 RAQTGSPRWR SKGYRCIGGV LYKVSANKLS KTCSRLGGDG GGRPLLRTGR ENSTTRP00000014336/1-884 KAQPGSPRWR NKGYRCIGGV LYKVSANKLS KTYGRPGGDG GSRPLLRAXX bmy_07606T0/1-523 ---------- ---------- ---------- ---------- -------SGQ BACU001483/1-1024 KAQPGSPRWR NKGYRCIGGV LYKVSANKLS KTYGRPGSDG GSRPLLRAGR 701 750 ENSP00000262577/1-948 LDPAGSCSRS LASRAVQRSL AII---RQAR QRREKRK-EY CMYYNRFGRC ENSBTAP00000028621/1-944 LDPASSCSRS LASRAVQRSL AIVRQARQAR QRRRRRKEEY CMYYNRFGRC ENSTTRP00000014336/1-884 XXXXXXXXXX XXXXXXXXXX XXX---XXXX XXXXXXXXXX XXXXXXXXXX bmy_07606T0/1-523 ADSA------ ---------- ---------- ---------- -LYAERVG-- BACU001483/1-1024 LDPASSCSRS LASRAVQRSL AIV---RQAR QRRRRRKEEY CMYYNRFGRC 751 800 ENSP00000262577/1-948 NRGERCPYIH DPEKVAVCTR FVRGTCKKTD GTCPFSHHVS KEKMPVCSYF ENSBTAP00000028621/1-944 NRGERCPYVH DPEKVAVCTR FVRGTCKKTD GTCPFSHHVS KEKMPVCSYF ENSTTRP00000014336/1-884 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_07606T0/1-523 ---------- ---------- --GPTCRGVG G--------- ---------- BACU001483/1-1024 NRGEHCPYIH DPEKVAVCTR FVRGTCKKTD GTCPFSHHVS KEKMPVCSYF 801 850 ENSP00000262577/1-948 LKGICSNSNC PYSHVYVSRK AEVCSDFLKG YCPLGAKCKK KHTLLCPDFA ENSBTAP00000028621/1-944 LKGICSNSSC PYSHVYVSRK AEVCTDFLKG YCPLGAKCKK KHTLLCPDFS ENSTTRP00000014336/1-884 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_07606T0/1-523 ---------- ---------- ---------- ---------- ---------- BACU001483/1-1024 LKGICSNSNC PYSHVYVSRR AEVCTDFLKG YCPLGAKCKK KHTLLCPDFS 851 900 ENSP00000262577/1-948 RRGACPRGAQ CQLLHRTQKR HSRRAATSPA PGPSDATARS RVSASHGPRK ENSBTAP00000028621/1-944 RRGVCPRGAQ CQLLHRNPKR LGRRAATPTA PEPGNTPPRS RASTSHGPRK ENSTTRP00000014336/1-884 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXKS bmy_07606T0/1-523 ---------- ---------- -GEEASPLMG PE-------- ----RQGPER BACU001483/1-1024 RRGVCPRGAQ CQLLHRNQRH LGRRAAPAPA PEPNTTPPRS RASTSHGPRK 901 950 ENSP00000262577/1-948 -------PSA SQRPTRQTPS SAALTAAAVA APPHCPGGSA SPSSSKASSS ENSBTAP00000028621/1-944 -------PSA ALRPARRMSS ---------- ----PPSSMA AGSTSPPSSP ENSTTRP00000014336/1-884 --------LA AHRPTRQMSS ---------- ----CPTSAA AGS------- bmy_07606T0/1-523 ---------- ---------- ---------- ---------- ---------- BACU001483/1-1024 EPPPAATQLC GLQTPKETSV QSRSSDLEVP HPLVPRLGGA KGIPGPDQA- 951 1000 ENSP00000262577/1-948 SSSSSSPPAS LDHEAPSLQE AALAAACSNR -LCKLPSFIS LQSSPSPGAQ ENSBTAP00000028621/1-944 RVLAAASPSX LEPEELCLQA AEASAGAGSG GLSKLPSFIA LQSSPSPGGQ ENSTTRP00000014336/1-884 ---------- ---APPRLPH GSLASASSSS ---------- -VSSSHSSSS bmy_07606T0/1-523 ---------- ---------- ---------- ---------- -------GAL BACU001483/1-1024 -VQGCPAPAL GRKEELSLPE EAASAGTGSG SLCKLPSFIS LQSSPGPGGQ 1001 1050 ENSP00000262577/1-948 PRVRAPRAPL TKDSGKPLHI KPRL------ ------ ENSBTAP00000028621/1-944 PRAQAPRSAS SKDSGKSLHI KPRL------ ------ ENSTTRP00000014336/1-884 PPSPS----- ---------- ---------- ------ bmy_07606T0/1-523 PVVVSP---- ---------- ---------- ------ BACU001483/1-1024 PRAPTPRSSP TKDSDRQTCR QLDITPLSAA GFKRSP