KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:36:26 2014 Check: 00 .. Name: ENSBTAP00000028637/1-402 Len: 402 Check: 5339 Weight: 1.00 Name: ENSTTRP00000001853/1-402 Len: 402 Check: 6846 Weight: 1.00 Name: bmy_12320T0/1-238 Len: 402 Check: 4899 Weight: 1.00 Name: BACU004476/1-401 Len: 402 Check: 7264 Weight: 1.00 // 1 50 ENSBTAP00000028637/1-402 MMLALRRACI FRALVFMAFL PPPQRAQDPA MVHYIYQRFQ VLEQGLQKCT ENSTTRP00000001853/1-402 TMLALRRASA FSVLILTAFL PLPQFAQDPA MVHYIYQRFQ VLEQGLQKCT bmy_12320T0/1-238 ---------- ---------- ---------- ---------- ---------- BACU004476/1-401 -MLALRRASA FRVLILTAFL PLPQFAQDPA MVHYIYQRFQ VLEQGLQKCT 51 100 ENSBTAP00000028637/1-402 QATRAYIQDF QEFSKNISIM LGQCHTYTSE YKSAVHNLAL RVERAQREID ENSTTRP00000001853/1-402 QATREYIEDF REFSKNISVM LGRCQTYTSE YKSAVHNLVL RVERAQREID bmy_12320T0/1-238 ---------- ---------- ---------- ---------- ---------- BACU004476/1-401 QAAREYIQDF QEFSKNISVM LGRCQTYTSE YKSAVRNLAL RVERAQREID 101 150 ENSBTAP00000028637/1-402 YLEYLREADA CVESEDKVLA EKLVQEAEED QRIRMLLNAS CDNMLMGIKS ENSTTRP00000001853/1-402 YLEYLREAEV CTESEDKMLT EKQVQGAEEE KRIRTLLNAS CDNMLMGIKS bmy_12320T0/1-238 ---------- ---------- ---------- ---------- ---------- BACU004476/1-401 YLEYLREAEV CTESEDKVLA EKQVQEAEEE KRIRTLLNAS CDNMLMGIKS 151 200 ENSBTAP00000028637/1-402 LKIVKKTTDT DGSWMKDAVS DSPKVYVFIG PRNNTVWEFA NIRAFMEDST ENSTTRP00000001853/1-402 LKIVKKTMDT DGSWMKDAVR DSPKVYLLIG SRNNTVWEFA SIRAFMEDST bmy_12320T0/1-238 ---------- ----MKDAVR DSPKVYLLIG SRNNTVWEFA SIRAFMEDST BACU004476/1-401 LKIVKKTMDT DGSWMKDAVR DSPKVYLFIG SRNNTVWEFA SIRAFMEDST 201 250 ENSBTAP00000028637/1-402 KPAPRKLILT HSWQGTGQVI YKGFLFFHSQ GTPNEIIKYN LQKRIVEDRM ENSTTRP00000001853/1-402 KPAPRKLILT HSWQGTGQVI YKGFLFFHSQ GTPNEIIKYN LQKRTVEDRM bmy_12320T0/1-238 KPGPRKLILT HSWQGTGQVI YKGFLFFHSQ GTPNEIIKYN LQKRTVEDRM BACU004476/1-401 KPGPRKLILT HSWQGTGQVI YKGFLFFHSQ GTPNEIIKYN LQKRTVEDRM 251 300 ENSBTAP00000028637/1-402 LLFGGAGRAL AYQHSPSTYI DLAVDEHGLW AIHSGPGIRS HLVLTKIEPD ENSTTRP00000001853/1-402 LLSGGAGRAL AYPRSPSTYI DLAADEHGLW AIHSGPSIHG HLVLTKIEPD bmy_12320T0/1-238 LLLGGAGRAL AYPHSPSTYI DLAVDEHGLW AIHSGPSIHG HLVLTKIEPD BACU004476/1-401 LLLGGAGRAL AYPHSPSTYI DLAVDEHGLW AIHSGPSIHG HLVLTKIEPD 301 350 ENSBTAP00000028637/1-402 TLGVEHSWDT PCRSQDAEAS FLLCGVLYVV YSSGGHGPHR ITCVYDPLGT ENSTTRP00000001853/1-402 TLGVEHSWDT PCRSQDAEAS FLLCGVLYVV YSSGGLGPHH ITCVYDPLGA bmy_12320T0/1-238 TLGVEHSWDT PCRSQDAEAS FLLCGVLYVV YSSGGLGPHR ITCVYDPLGT BACU004476/1-401 TLGVEHSWDT PCRSQDAEAS FLLCGVLYVV YSSGGLSPHR ITCVYDPLGT 351 400 ENSBTAP00000028637/1-402 IMEENLPNLF FPRRPRSHSM IHYNPRDKHL YAWNDGNQMI YKLQTRRKQP ENSTTRP00000001853/1-402 VMEEDLPNVF FPRRSRSHSM IHYNPRDKQL YAWNDGNQII YKLQTKRKQP bmy_12320T0/1-238 VIEENLPNVF FPRRSRSHSM IHYNPRDKQL YAWNDGNQII YKLQTKRKQP BACU004476/1-401 VIEENLPNVF FPRRSRSHSM IHYNPRDKQL YAWNDGNQII YKLQTKRKQP 401 450 ENSBTAP00000028637/1-402 LQ ENSTTRP00000001853/1-402 LQ bmy_12320T0/1-238 LQ BACU004476/1-401 LQ