KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:36:27 2014 Check: 00 .. Name: bmy_08749T0/1-204 Len: 257 Check: 2841 Weight: 1.00 Name: ENSTTRP00000003539/1-257 Len: 257 Check: 4351 Weight: 1.00 Name: ENSP00000285419/1-257 Len: 257 Check: 9778 Weight: 1.00 Name: BACU006977/1-257 Len: 257 Check: 9869 Weight: 1.00 Name: ENSBTAP00000028656/1-257 Len: 257 Check: 97 Weight: 1.00 // 1 50 bmy_08749T0/1-204 MLASAL--RI PF------EK CHSHVPTILT RKQPQSRTPP PYTAITSPDA ENSTTRP00000003539/1-257 MAADGVDERS PLLSASHSGN VTPTAPPYLQ ESSPRAELPP PYTAIASPDA ENSP00000285419/1-257 MAADGVDERS PLLSASHSGN VTPTAPPYLQ ESSPRAELPP PYTAIASPDA BACU006977/1-257 MAADGVDERS PLLSASHSGN VTPTAPPYLQ ESSPRAELPP PYTAIASPDA ENSBTAP00000028656/1-257 MAADGVDERS PLLSASHSGS VTPTAPPYLQ DSSPRAELPP PYTAIVSPDA 51 100 bmy_08749T0/1-204 SGIPVINCHV CQSL-NLDGK LHQHVAKCTV CNDATPVKNP PTGKKYVRCP ENSTTRP00000003539/1-257 SGIPVINCRV CQSLINLDGK LHQHVVKCTV CNEATXXXXX XXXXXXXXXX ENSP00000285419/1-257 SGIPVINCRV CQSLINLDGK LHQHVVKCTV CNEATPIKNP PTGKKYVRCP BACU006977/1-257 SGIPVINCRV CQSLINLDGK LHQHVVKCTV CNEATPIKNP PTGKKYVRCP ENSBTAP00000028656/1-257 SGIPVINCRV CQSLINLDGK LHQHVVKCTV CNEATPIKNP PAGKKYVRCP 101 150 bmy_08749T0/1-204 CNCLLIYKDT SRQIGCPRPT CRHIINLGPV MLISEEQPAQ PALPVQPEGT ENSTTRP00000003539/1-257 XXXXXXXXXX XXXXXXXXXX XRRIINLGPV MLISEEQPAQ PALPVQPEGT ENSP00000285419/1-257 CNCLLICKDT SRRIGCPRPN CRRIINLGPV MLISEEQPAQ PALPIQPEGT BACU006977/1-257 CNCLLICKDT SRRIGCPRPN CRRIINLGPV MLISEEQPAQ PALPVQPEGT ENSBTAP00000028656/1-257 CNCLLICKDT SRRIGCPRPN CRRIINLGPV MLVSEEQPAQ PALPVQPEGT 151 200 bmy_08749T0/1-204 RIMCGHCGNM FLWTELRFNT LAKCPHCRKI SSVGSALPRS I--------- ENSTTRP00000003539/1-257 RVVCGHCGNT FLWMELRFNT LAKCPHCKKI SSVGSALPRR RCCAYITIGM ENSP00000285419/1-257 RVVCGHCGNT FLWMELRFNT LAKCPHCKKI SSVGSALPRR RCCAYITIGM BACU006977/1-257 RVVCGHCGNT FLWMELRFNT LAKCPHCKKI SSVGSALPRR RCCAYITIGM ENSBTAP00000028656/1-257 RVVCGHCGNT FLWMELRFNT LAKCPHCKKI SSVGSALPRR RCCAYITIGM 201 250 bmy_08749T0/1-204 --------LK NHSAHFDEK- RIFFQQWSIN Y--------- ---------- ENSTTRP00000003539/1-257 ICIFIGVGLT VGTQGFARRF HATYVSWAVA YFLGLICLIR ACYWGAIRVS ENSP00000285419/1-257 ICIFIGVGLT VGTPDFARRF RATYVSWAIA YLLGLICLIR ACYWGAIRVS BACU006977/1-257 ICIFIGVGLT VGTQGFARRF HATYVSWAVA YLLGLICLIR ACYWGAIRVS ENSBTAP00000028656/1-257 MCIFIGIGLT VGTQDFARRF HATYVSWAIA YLLGLVCLIR ACYWGAIRVS 251 300 bmy_08749T0/1-204 ------- ENSTTRP00000003539/1-257 YPEHSFA ENSP00000285419/1-257 YPEHSFA BACU006977/1-257 YPEHSFA ENSBTAP00000028656/1-257 YPEHSFA