KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:36:29 2014 Check: 00 .. Name: ENSP00000441214/1-1123 Len: 1138 Check: 5720 Weight: 1.00 Name: ENSTTRP00000002928/1-1104 Len: 1138 Check: 2348 Weight: 1.00 Name: ENSBTAP00000028663/1-1101 Len: 1138 Check: 8641 Weight: 1.00 Name: bmy_17066T0/1-1012 Len: 1138 Check: 4653 Weight: 1.00 Name: BACU011573/1-1075 Len: 1138 Check: 3395 Weight: 1.00 // 1 50 ENSP00000441214/1-1123 MPIVDKLKEA LKPGRKDSAD DGELGKLLAS SAKKVLLQKI EFEPASKSFS ENSTTRP00000002928/1-1104 MPIVDKLKEA LKPGRRDSAD DGELGKLLAS SARKVLLQKL EFEPASKSFS ENSBTAP00000028663/1-1101 MPIVDKLKEA LKPGRRDSAD DGDLGKLLAA SAKKVLLQKL EFEPASKSFS bmy_17066T0/1-1012 MPIVDKLKEA LKPGRRDSAD DGELGKLLAS SARKVLLQKL EFEPASKSFS BACU011573/1-1075 MPIVDKLKEA LKPGRRDSAD DGELGKLLAS SARKVLLQKL EFEPASKSFS 51 100 ENSP00000441214/1-1123 YQLEALKSKY VLLNPKTEGA SRHKSGDDPP ARRQGSEHTY ESCGDGVPAP ENSTTRP00000002928/1-1104 YQLESLKSKY VLLNPRTEGA GCHRSGDEPQ ARTQGSERAY ESCGDGVPAP ENSBTAP00000028663/1-1101 YQLESLKSKY VLLNPRTEGA RCHRSGDEPP ARRQGSEHAY ESCSDGVPAP bmy_17066T0/1-1012 YQLESLKSKY VLLNPRTEGA GCHRSGDEPQ ARTQGSEHAY ESCGDGVPAP BACU011573/1-1075 YQLESLKSKY VLLTPRTEGA GCHRSGDEPQ ARTQGSEHAY ESCGDGVPAP 101 150 ENSP00000441214/1-1123 QKVLFPTERL SLRWERVFRV GAGLHNLGNT CFLNATIQCL TYTPPLANYL ENSTTRP00000002928/1-1104 QKVLFPVERL SLRWGRVYRV GAGLHNLGNT CFLNSTVQCL TYTPPLANYL ENSBTAP00000028663/1-1101 QKVLFPVERL SLRWGRVYRV GAGLHNLGNT CFLNSTVQCL TYTPPLANYL bmy_17066T0/1-1012 QKVLFPVERL SLRWGRVYRV GAGLHNLGNT CFLNSTVQCL TYTPPLANYL BACU011573/1-1075 QKVLFPMERL SLRWGRVYRV GAGLHNLGNT CFLNSTVQCL TYTPPLANYL 151 200 ENSP00000441214/1-1123 LSKEHARSCH QGSFCMLCVM QNHIVQAFAN SGNAIKPVSF IRDLKKIARH ENSTTRP00000002928/1-1104 LSKEHTRGCH QGSFCMLCVM QSHIIQAFAN SGNAIKPVSF IRDQXXXXXX ENSBTAP00000028663/1-1101 LSKEHTRGCH QGSFCMLCVM QNHIIQAFAN SGNAIKPVSF IRDLRKIARH bmy_17066T0/1-1012 LSKEHTRGCH QGSFCMLCVM QNHIIQAFAN SGNAIKPVSF IRDLRKIARH BACU011573/1-1075 LSKEHTRGCH QGSFCMLCVM QNHIIQAFAN SGNAIKPVSF IRDLRKIARH 201 250 ENSP00000441214/1-1123 FRFGNQEDAH EFLRYTIDAM QKACLNGCAK LDRQTQATTL VHQIFGGYLR ENSTTRP00000002928/1-1104 XXXXXXXXXX XXXXXXXXXX XXXXXX-XXX LDRQTQATTL VHQIFGGYLR ENSBTAP00000028663/1-1101 FRFGNQEDAH EFLRYTIDAM QKACLSGCAK LDRQTQATTL VHQIFGGYLR bmy_17066T0/1-1012 FRFGNQEDAH EFLRYTIDAM QKACLSGCAK LDRQTQATTL VHQIFGGYLR BACU011573/1-1075 FRFGNQEDAH EFLRYTIDAM QKACLSGCAK LDRQTQATTL VHQIFGGYLR 251 300 ENSP00000441214/1-1123 SRVKCSVCKS VSDTYDPYLD VALEIRQAAN IVRALELFVK ADVLSGENAY ENSTTRP00000002928/1-1104 SRVKCSVCKS VSDTYDPYLD VALEIRQAAN IVRALELFVK PDVLSGENAY ENSBTAP00000028663/1-1101 SRVKCSMCKS VSDTYDPYLD VALEIRQAAN IVRALELFVK PDVLSGENAY bmy_17066T0/1-1012 SRVKCSVCKS VSDTYDPYLD VALEIRQAAN IVRALELFVK PDVLSGENAY BACU011573/1-1075 SRVKCSVCKS VSDTYDPYLD VALEIRQAAN IVRALELFVK PDVLSGENAY 301 350 ENSP00000441214/1-1123 MCAKCKKKVP ASKRFTIHRT SNVLTLSLKR FANFSGGKIT KDVGYPEFLN ENSTTRP00000002928/1-1104 MCAKCKKKVP ASKRFTIHRT SNVLTLSLKR FANFSGGKIT KDVGYPEFLN ENSBTAP00000028663/1-1101 MCAKCKKKVP ASKRFTIHRT SNVLTLSLKR FANFSGGKIT KDVGYPEFLN bmy_17066T0/1-1012 MC-------- ---------- ---------- -ANF------ ---------- BACU011573/1-1075 MCAKCKKKVP ASKRFTIHRT SNVLTLSLKR FANFTGGKIT KDVGYPEFLN 351 400 ENSP00000441214/1-1123 IRPYMSQNNG DPVMYGLYAV LVHSGYSCHA GHYYCYVKAS NGQWYQMNDS ENSTTRP00000002928/1-1104 IRPYMSQSNG EPVMYGLYAV LVHSGYSCHA GHYYWYVKAS NGQWYQMNDS ENSBTAP00000028663/1-1101 IRPYMSQSSG EPVMYGLYAV LVHSGYSCHA GHYYCYVKAS NGQWYQMNDS bmy_17066T0/1-1012 ---------- ---------- ---------- ---------- ---------- BACU011573/1-1075 IRPYMSQSNG EPVMYGLYAV LVHSGYSCHA GHYYCYVKAS NGQWYQMNDS 401 450 ENSP00000441214/1-1123 LVHSSNVKVV LNQQAYVLFY L--RIPGSKK SPEGLISRTG SSSLPGRPSV ENSTTRP00000002928/1-1104 FVHSSNIKVV LNQQAYVLFY L--RIPGSKK SPEGSICRT- ASSLPSHPRV ENSBTAP00000028663/1-1101 LVHASNIKVV LNQQAYVLFY L--RIPGSKK SPEGSISRT- -ASLSSRPGV bmy_17066T0/1-1012 ----SKASAA LVRHSLTLFY SFDRIPGSKK SPEGSICRT- TSSLPGHPRV BACU011573/1-1075 FVHSSNIKVV LNQQAYVLFY L--RIPGSKK SPEGSICRT- ASSLPGHPRV 451 500 ENSP00000441214/1-1123 IPDHSKKNIG NGIISSPLTG KRQDSGTMKK PHTTEEIGVP ISRNGSTLGL ENSTTRP00000002928/1-1104 VPDHSRKNIS NGTTSSSVTG KXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000028663/1-1101 VPDHVRKNVS NGTAASPMTG KRPDPVTMKK PQTPEELGVP IARNGSVLGL bmy_17066T0/1-1012 VPDHARKNIS NGTTSPSVTG KRPDPVTMKK PQTPEELGVP VARNGSVSGL BACU011573/1-1075 VPGHARKNIS NGTTSPSVTA KRPDPVTMKK PQTPEELGVP VARNGSVSGL 501 550 ENSP00000441214/1-1123 KSQNGCIPPK LPSGSPSPKL SQTPTHMPTI LDDPGKKVKK PAPPQHFSP- ENSTTRP00000002928/1-1104 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXEPGKKV-K PAPLQHFSPP ENSBTAP00000028663/1-1101 KSPNGYAPAK PPLASPSPKV CRTPTHAPAI LDEPGKKVKK PASLQHFSPP bmy_17066T0/1-1012 KSQNGYTPPK PPLGSPSPKL CKTPTHAPXV LDEPGKKVKK PAPLQHFSPP BACU011573/1-1075 KSQNGYTPPK PPLGSPSPKL CKTPTHAPTV LDEPGKKVKK PAPLQHFSPP 551 600 ENSP00000441214/1-1123 -RTAQGLPGT SNSNSSRSGS QRQGSWDSRD VVLSTSPKLL ATATANGHGL ENSTTRP00000002928/1-1104 LKTSPGPSGA GELCCSWCED RRPGSWDGR- ATLSTSPRPP AARTTNGL-P ENSBTAP00000028663/1-1101 -------PSA SAPGGSRSEG RRPGSWDGR- AAVSTSLRAP AAGTPNGLGP bmy_17066T0/1-1012 LKTSPGTPGT GEPGGSRCEG RRPGSWDGR- ATLSTSPRPP AARTANGLGP BACU011573/1-1075 LKTSPGTPGT GEPGGSRCEG RRPSSWDGR- ATLSTSPRPP AARTANGLGP 601 650 ENSP00000441214/1-1123 KGNDESAGLD RRGSSSSSPE HSASSDSTKA PQTPRSGAAH LCDSQETNCS ENSTTRP00000002928/1-1104 KVGDEGPAAE RSASS---LE HLAGGGPARP PPAPQSGAAP PGDSQGTHS- ENSBTAP00000028663/1-1101 QAGDEGPTPE RGGSS---PE HPT----SRP PQAPQSGVTP LGDSQGTHSV bmy_17066T0/1-1012 KVGDEGPAAE RRGSS---PE HPAGGGPTRP PQAPQSGAAP LSDSQGTHS- BACU011573/1-1075 KVGDEGPAAE RRGSS---PE HPAGGGPSRR PQAPQSGAAP LSDSQGTHS- 651 700 ENSP00000441214/1-1123 TAGHSKTPPS GADSKTVKLK SPVLSNTTTE PASTMSPPPA KKLALSAKKA ENSTTRP00000002928/1-1104 -AGPAKVLPA REDAELVKAK CPDLSSASPE PANTMSPPPA KKLALSARKA ENSBTAP00000028663/1-1101 TAGPTKVLPA RQDAEPEKAK CPVPSSTSPE PANTMSPPPA KKLALSAKKA bmy_17066T0/1-1012 -AGPAKVLPA REDAELVKAK CPDLSSAAPE PANAMSPPPA KKLALSARKA BACU011573/1-1075 -AGPAKVLLA REDAELVKAK CPDLSSTAPE PANAMSPPPA KKLALSARKA 701 750 ENSP00000441214/1-1123 STLWRATGND LRPPPPSPSS DLTHPMKTSH PVVASTWPVH RARAVSPAPQ ENSTTRP00000002928/1-1104 STLRRATGND LRPPPLSPSS DLTSPRKPTH PVVASTWPVS TIRAVSPAPR ENSBTAP00000028663/1-1101 STLRRATGND LRPPALSPSS DLTYPRKPTH PIVAAPWPVR AIRAVSPAPR bmy_17066T0/1-1012 STLRRATGND LRPPPLSPSS DLTSPRKPTH PVVASTWPVS TIRAVSPAPR BACU011573/1-1075 STLRRATGND LRPPPLSPSS DLTSPRKPTH PVVASTWPVS TIRAVSPAPR 751 800 ENSP00000441214/1-1123 SSSRLQPPFS PHPTLLSSTP KPPGTSEPRS CSSISTALPQ VNEDLVSLPH ENSTTRP00000002928/1-1104 PSSHLKPPPG PHSPSLSSSP PPLGTSDPQS HSPASAPLPQ VNGGFRAPSH ENSBTAP00000028663/1-1101 PSSHLKPPFG PCPPSLSSSP HPLGTSDPQS CSPTSAPLPQ VNGAFRAPLH bmy_17066T0/1-1012 PSSHLKPPLG PHAPSLSSSP PPLGTSDPQS HSPASAPLPQ VNGGFRAPSH BACU011573/1-1075 PSSHLKPPLG PHAPSLSSSP PPLRTSDPQS HSPASAPLPQ VNGGFRAPSH 801 850 ENSP00000441214/1-1123 QLPEASEPPQ SPSEKRKKTF VGEPQRLGSE TRLPQHIREA TAAPHG---K ENSTTRP00000002928/1-1104 QLPEAIEPPQ GLCKKRKKTR VGETQGQGSE LH-------S WAAPPGPPRK ENSBTAP00000028663/1-1101 QLPEASEPLR SLGKKRKKTR V-KVGGRVSE TCT------A VAAQPG---K bmy_17066T0/1-1012 QLPEASEPPQ GLCKKRKKTR VGETQGQGSE TCT------A VAAPPGPPRK BACU011573/1-1075 QLPEASEPPQ GLCKKRKKTR VGETQGQGSE TCM------A VAAPPGPPRK 851 900 ENSP00000441214/1-1123 RKRKKKKRPE DTAASALQEG QTQRQPGSPM YRREGQAQLP AVRRQEDGTQ ENSTTRP00000002928/1-1104 RRKRKRKHTG DTDASPLQAG RMPGPPWSPA HRKEGRAEPL AGRPEEEGGQ ENSBTAP00000028663/1-1101 RRKRKRKHMG DVDATPLQDE RTPGPPWSPE RRKEGRAEPP ADRSEEEGRQ bmy_17066T0/1-1012 RRRRKRKHTG DTDTSPLQAG RTPGPPWSPA HRKEGRAEPP AGRPEEEGGQ BACU011573/1-1075 RRRRKRKHTG DTDTSPLQAG RTAGPPWSPA HRKEGQAEPS VGRPEEEGGQ 901 950 ENSP00000441214/1-1123 PQVNG----- -QQVGCVTDG HHASSRKRRR KGAEGLGEEG GLHQD-PLRH ENSTTRP00000002928/1-1104 QPGNG----- -WPVGCVSDG HRVSRRKRRR QGAEGLGGED GLRRDHPPRR ENSBTAP00000028663/1-1101 QPGSGQRLEN SWPVGCMTNG PHVSSRKRRR KGLESCDEED CLPGD-PPWH bmy_17066T0/1-1012 QPGNG----- -WPVGCGSDG HRVSRRKRRR KGAEGLGGED CLRRD-PPRH BACU011573/1-1075 QPGNG----- -WPVGCGSDG HRVSRRKRRR KGAEGLGGED CLRQD-PPRH 951 1000 ENSP00000441214/1-1123 S-CSPMGDGD PEAMEESPRK KKKKKRKQET QRAVEEDGHL KCPRSAKPQD ENSTTRP00000002928/1-1104 G-CSSSDVVQ PEAIAASPRK KRKKKRKQES QQEVEENE-- --PRA-R--G ENSBTAP00000028663/1-1101 GSCVPSDVVQ PETVATSPRK KKKKKKKQEP RQEVEEKE-- --PEGQR--G bmy_17066T0/1-1012 GSCSSSDVVQ PETIAASPRK KKKKKRKRES QQEVEENE-- --PEGQR--G BACU011573/1-1075 GSCSSSDVVQ PETIAASPRK KKKKKRKQES QQEVEENE-- --PEGQR--G 1001 1050 ENSP00000441214/1-1123 AVVPESSSCA PSANGWCPGD RMGLSQAPPV SWNGERESDV VQELLKYSSD ENSTTRP00000002928/1-1104 SEVPGSRP-G TAVNGQAPGG PTGLGQAPLV SWDRERESDV VQELLKYSSD ENSBTAP00000028663/1-1101 PAVPGCSP-L PAVNGQAPRG PTGLGPAPLA SWDRERESDV VQELLKYSSD bmy_17066T0/1-1012 SVVPGSRP-G TAVNGQAPGG PTGLGQAPLV SWDRERESDV VQELLKYSSD BACU011573/1-1075 SVVPGSRP-G TAVNGQAPGD PT-------- ---------- ---------- 1051 1100 ENSP00000441214/1-1123 KAYGRKVLTW DGKMSAVSQD AIEDSRQART ETVVDDWDEE FDRGKEKKIK ENSTTRP00000002928/1-1104 KAYGRRVLTW DGEVSAVSQD AIQDSRLARM ATVIDDWDEE FDRGKEKKLK ENSBTAP00000028663/1-1101 KAYGRKVLTW DGAVSAVSQD AIQDSRLART ATVIDDWDEE FDRGKEKKLK bmy_17066T0/1-1012 KAYGRRVLTW DGEVSAVSQD AIQDSRLARM ATVIDDWDEE FDRGKEKKLK BACU011573/1-1075 ------VLTW DGEVSAVSQD AIQDSRLACM ATVIDDWDEE FDRGKEKKLK 1101 1150 ENSP00000441214/1-1123 KFKREKRRNF NAFQKLQTRR NFWSVTHPAK AASLSYRR ENSTTRP00000002928/1-1104 KFKREKKRNF NAFQKLQSRR NFWSVTHPAK ASSLSYRR ENSBTAP00000028663/1-1101 KFKREKKRNF NAFQKLQSRR NFWSVTHPAK ASSLSYRR bmy_17066T0/1-1012 KFKREKKRNL NAFQKLQSRR NFWSVTHPAK XSSLSYRR BACU011573/1-1075 KFKREKKRNF NAFQKLQSRR NFWSVTHPAK ASSLSYRR