KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:36:30 2014 Check: 00 .. Name: ENSP00000296326/1-309 Len: 365 Check: 6846 Weight: 1.00 Name: ENSBTAP00000028676/1-365 Len: 365 Check: 9959 Weight: 1.00 Name: ENSTTRP00000012029/1-294 Len: 365 Check: 4658 Weight: 1.00 Name: bmy_02317T0/1-220 Len: 365 Check: 3691 Weight: 1.00 // 1 50 ENSP00000296326/1-309 MTLLTDATPL VKEPHPLPLV PRPWFLPSLF AAFNVVLLVF FSGLFFAFPC ENSBTAP00000028676/1-365 MPLLKDAMPL MKEPHPPPQV PLPWVLPSLF AAFNVVLLVI FSGLFFAFPC ENSTTRP00000012029/1-294 -------MPL LKEPHSPPQA PPSWILPSLF AAFNVVLLVV FSGLFFAFPC bmy_02317T0/1-220 -------MPL LKEPHRPPQA PLPWILPSLF AAFNVVLLVV FSGLFFAFP- 51 100 ENSP00000296326/1-309 RWLAQNGEWA FPVITGSLFV LTFFSLVSLN FSDPGILHQG SAEQGPLTVH ENSBTAP00000028676/1-365 RWLAQNGEWA FPVITGLLFI LTFFSLISLN FSDPGILHQG SNEQGPLMVH ENSTTRP00000012029/1-294 RWLAQNGEWA FPIVTGLLFI LTFFSLVSLN FSDPGILHQG SNEQGPTMVH bmy_02317T0/1-220 -WLAQNGEWA FPVITGLLFI LTFFSLVSLN FSDPGILHQG SNEQGPMMVH 101 150 ENSP00000296326/1-309 VVWVNHGAFR LQWCPKCCFH RPPRTYHCPW CNICVEDFDH HCKWVNNCIG ENSBTAP00000028676/1-365 VVWVNHRAFR LQWCQKCCFH RPPRTYHCPW CNICVEDFDH HCKWVNNCIG ENSTTRP00000012029/1-294 VVWVNHRAFR LQWCPKCCFH RPPRTYHCPW CNICVEDFDH HCKWVNNCIG bmy_02317T0/1-220 VVWVNHRAFR LQWCHKCCFH RPPRTYHCPR CNICVEDFDH HCKWVNNCIG 151 200 ENSP00000296326/1-309 HRNFRFFMLL VLSLCLYSGA MLVTCLIFLV RTTHLPFSTD KAIAIVVAVS ENSBTAP00000028676/1-365 HRNFRFFMLL VLSLCLYSGA MLVTCLIFLV RTTHLSFSMD KAIAILVAVP ENSTTRP00000012029/1-294 HRNFRFFMLL VLSLCLYSGA MLVTCLIFLV RTTHLPFSMD KAI------- bmy_02317T0/1-220 HRNFRFFMLL VLSLCLYSGA MLVTCLIFLV RTTHLPFSMD KAIAIVVAVP 201 250 ENSP00000296326/1-309 AAGLLVPLSL LLLIQALSVS SADRTYKGKC RHLQGYNPFD QGCASNWYLT ENSBTAP00000028676/1-365 AAGFLVPLFL LLLIQAMSVS AAERSYEGKC RYLQGYNPFD HGCASNWYLT ENSTTRP00000012029/1-294 -AGFLVPLFL LLLIQAMSVS AAERSYEGKC RYLEGHNPFD HGCASNWYLT bmy_02317T0/1-220 AAGFLVPLFL LLLIQAMSVS AAERSYEGK- ---------- ---------- 251 300 ENSP00000296326/1-309 ICAPLGPKYM AEAVQLQRVV GPDWTSMPNL HPPMSPSALN PPAPTSGSLQ ENSBTAP00000028676/1-365 ICAPLGPKYM AEAVWLQRVV GSDWVPIQTP RFPMCTSVLS PPAFPEPGSV ENSTTRP00000012029/1-294 ICAPLGPKYM AEAVWLQRVV GPDWVPRQNP HFPMCPSAHS PPVPTSGSQP bmy_02317T0/1-220 ---------- ---------- ---------- ---------- ---------- 301 350 ENSP00000296326/1-309 SREGTPGAW- ---------- ---------- ---------- ---------- ENSBTAP00000028676/1-365 PQPQPPGLYK PGKGPPGSGE AAVLQELHAS PVLPRLREDP RRGSVYFLPF ENSTTRP00000012029/1-294 TRQGAPREW- ---------- ---------- ---------- ---------- bmy_02317T0/1-220 ---------- ---------- ---------- ---------- ---------- 351 400 ENSP00000296326/1-309 ---------- ----- ENSBTAP00000028676/1-365 RPGRCQESLH PNLTS ENSTTRP00000012029/1-294 ---------- ----- bmy_02317T0/1-220 ---------- -----