KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:36:32 2014 Check: 00 .. Name: ENSTTRP00000015993/1-1031 Len: 1166 Check: 5244 Weight: 1.00 Name: BACU004080/1-1158 Len: 1166 Check: 2832 Weight: 1.00 Name: bmy_03812T0/1-1079 Len: 1166 Check: 9269 Weight: 1.00 Name: ENSP00000346236/1-1031 Len: 1166 Check: 9902 Weight: 1.00 Name: ENSBTAP00000028682/1-1032 Len: 1166 Check: 9254 Weight: 1.00 // 1 50 ENSTTRP00000015993/1-1031 MGRESRHYRK RSASRGRSGS RSRSRSPSDK RSKRGDDRRS RSRDRDRRRE BACU004080/1-1158 MGRESRHYRK RSASRGRSGS RSRSRSPSDK RSKRGDDRRS RSRDRDRRRE bmy_03812T0/1-1079 MGRESRHYRK RSASRGRSGS RSRSRSPSDK RSKRGDDRRS RSRDRDRRRE ENSP00000346236/1-1031 MGRESRHYRK RSASRGRSGS RSRSRSPSDK RSKRGDDRRS RSRDRDRRRE ENSBTAP00000028682/1-1032 MGRESRHYRK RSASRGRSGS RSRSRSPSDK RSKRGDDRRS RSRDRDRRRE 51 100 ENSTTRP00000015993/1-1031 RSRSRDKRRS RSRDRKRLRR SRSRERDRSR ERRRSRSRDR RRSRSRSRGR BACU004080/1-1158 RSRSRDKRRS RSRDRKRLRR SRSRERDRSR ERRRSRSRDR RRSRSRSRGR bmy_03812T0/1-1079 RSRSRDKRRS RSRDRKRLRR SRSRERDRSR ERRRSRSRDR RRSRSRSRGR ENSP00000346236/1-1031 RSRSRDKRRS RSRDRKRLRR SRSRERDRSR ERRRSRSRDR RRSRSRSRGR ENSBTAP00000028682/1-1032 RSRSRDKRRS RSRDRKRLRR SRSRERDRSR ERRRSRSRDR RRSRSRSRGR 101 150 ENSTTRP00000015993/1-1031 RSRSSSPGNK SKKAENRSRS KEKTDSGESS KEKKKDKDDK EDEKEKDAGN BACU004080/1-1158 RSRSSSPGNK SKKAENRSRS KEKTDSGESS KEKKKDKDDK EDEKEKDAGN bmy_03812T0/1-1079 RSRSSSPGNK SKKAENRSRS KEKTDSGESS KEKKKDKDDK XDEKEKDAGN ENSP00000346236/1-1031 RSRSSSPGNK SKKTENRSRS KEKTDGGESS KEKKKDKDDK EDEKEKDAGN ENSBTAP00000028682/1-1032 RSRSSSPGNK SKKAENRSRS KEKTDSGESS KEKKKDKDDK EDEKEKDAGN 151 200 ENSTTRP00000015993/1-1031 FDQNKLEEEM RKRKERVEKW REEQRKKAME NIGELKKEIE EMKQGKKWSL BACU004080/1-1158 FDQNKLEEEM RKRKERVEKW REEQRKKAME NIGELKKEIE EMKQGKKWSL bmy_03812T0/1-1079 FDQNKLEEEM RKRKERVEKW REEQRKKAME NIGELKKEIE EMKQGKKWSL ENSP00000346236/1-1031 FDQNKLEEEM RKRKERVEKW REEQRKKAME NIGELKKEIE EMKQGKKWSL ENSBTAP00000028682/1-1032 FDQNKLEEEM RKRKERVEKW REEQRKKAME NIGELKKEIE EMKQGKKWSL 201 250 ENSTTRP00000015993/1-1031 EDDDDDEDDP AEAEKEGNEM EGEELDPLDA YMEEVKEEVK KFNMRSVKGG BACU004080/1-1158 EDDDDDEDDP AEAEKEGNEM EGEELDPLDA YMEEVKEEVK KFNMRSVKGG bmy_03812T0/1-1079 EDDDDDEDDP AEAEKEGNEM EGEELDPLDA YMEEVKEEVK KFNMRSVKGG ENSP00000346236/1-1031 EDDDDDEDDP AEAEKEGNEM EGEELDPLDA YMEEVKEEVK KFNMRSVKGG ENSBTAP00000028682/1-1032 EDDDDDEDDP AEAEKEGNEM EGEELDPLDA YMEEVKEEVK KFNMRSVKGG 251 300 ENSTTRP00000015993/1-1031 GGNEKKSGPT VTKVVTVVTT KKAVVDSDKK KGELMENDQD AMEYSSEEEE BACU004080/1-1158 GGNEKKSGPT VTKVVTVVTT KKAVVDSDKK KGELMENDQD AMEYSSEEEE bmy_03812T0/1-1079 GGNEK----- ---------- ---------- ---------- ---YSSEEEE ENSP00000346236/1-1031 GGNEKKSGPT VTKVVTVVTT KKAVVDSDKK KGELMENDQD AMEYSSEEEE ENSBTAP00000028682/1-1032 GGNEKKSGPT VTKVVTVVTT KKAVVDSDKK KGELMENDQD AMEYSSEEEE 301 350 ENSTTRP00000015993/1-1031 VDLQTALTGY QTKQRKLLEP VDHGKIEYEQ FRKNFYVEVP ELAKMSQEEV BACU004080/1-1158 VDLQTALTGY QTKQRKLLEP VDHGKIEYEQ FRKNFYVEVP ELAKMSQEEV bmy_03812T0/1-1079 VDLQTALTGY QTKQRKLLEP VDHGKIEYEQ FRKNFYVEVP ELAKMSQEEV ENSP00000346236/1-1031 VDLQTALTGY QTKQRKLLEP VDHGKIEYEP FRKNFYVEVP ELAKMSQEEV ENSBTAP00000028682/1-1032 VDLQTALTGY QTKQRKLLEP VDHGKIEYEP FRKNFYVEVP ELAKMSLEEV 351 400 ENSTTRP00000015993/1-1031 NVFRLEMEGI IVKGKGCPKP IKSWVQCGIS MKILNSLKKH GYEKPTPIQT BACU004080/1-1158 NVFRLEMEGI IVKGKGCPKP IKSWVQCGIS MKILNSLKKH GYEKPTPIQT bmy_03812T0/1-1079 NVFRLEMEGI IVKGKGCPKP IKSWVQCGIS MKILNSLKKH GYEKPTPIQT ENSP00000346236/1-1031 NVFRLEMEGI TVKGKGCPKP IKSWVQCGIS MKILNSLKKH GYEKPTPIQT ENSBTAP00000028682/1-1032 NVFRLEMEGI TVKGKGCPKP IKSWVQCGIS MKILNSLKKH GYEKPTPIQT 401 450 ENSTTRP00000015993/1-1031 QAIPAIMSGR DLIGIAKTGS GKTIAFLLPM FRHIMDQRSL EEGEGPIAVI BACU004080/1-1158 QAIPAIMSGR DLIGIAKTGS GKTIAFLLPM FRHIMDQRSL EEGEGPIAVI bmy_03812T0/1-1079 QAIPAIMSGR DLIGIAKTGS GKTIAFLLPM FRHIMDQRSL EEGEGPIAVI ENSP00000346236/1-1031 QAIPAIMSGR DLIGIAKTGS GKTIAFLLPM FRHIMDQRSL EEGEGPIAVI ENSBTAP00000028682/1-1032 QAIPAIMSGR DLIGIAKTGS GKTIAFLLPM FRHIMDQRSL EEGEGPIAVI 451 500 ENSTTRP00000015993/1-1031 MTPTRELALQ ITKECKKFSK TLGLRVVCVY GGTGISEQIA ELKRGAEIIV BACU004080/1-1158 MTPTRELALQ ITKECKKFSK TLGLRVVCVY GGTGISEQIA ELKRGAEIIV bmy_03812T0/1-1079 MTPTRELALQ ITKECKKFSK TLGLRVVCVY GGTGISEQIA ELKRGAEIIV ENSP00000346236/1-1031 MTPTRELALQ ITKECKKFSK TLGLRVVCVY GGTGISEQIA ELKRGAEIIV ENSBTAP00000028682/1-1032 MTPTRELALQ ITKECKKFSK TLGLRVVCVY GGTGISEQIA ELKRGAEIIV 501 550 ENSTTRP00000015993/1-1031 CTPGRMIDML AANSGRVTNL RRVTYVVLDE ADRMFDMGFE PQVMRIVDNV BACU004080/1-1158 CTPGRMIDML AANSGRVTNL RRVTYVVLDE ADRMFDMGFE PQVMRIVDNV bmy_03812T0/1-1079 CTPGRMIDML AANSGRVTNL RRVTYVVLDE ADRMFDMGFE PQVMRIVDNV ENSP00000346236/1-1031 CTPGRMIDML AANSGRVTNL RRVTYVVLDE ADRMFDMGFE PQVMRIVDNV ENSBTAP00000028682/1-1032 CTPGRMIDML AANSGRVTNL RRVTYVVLDE ADRMFDMGFE PQVMRIVDNV 551 600 ENSTTRP00000015993/1-1031 RPDRQTVMSA MXXXXXXXXX XHRILSKPIE VQVGGRSVVC SDVEQQVXXX BACU004080/1-1158 RPDRQTVMFS ATFPRAMEAL ARRILSKPIE VQVGGRSVVC SDVEQQVIVI bmy_03812T0/1-1079 RPDRQTVMFS ATFPRAMEAL ARRILSKPIE VQVGGRSVVC SDVEQQVIVI ENSP00000346236/1-1031 RPDRQTVMFS ATFPRAMEAL ARRILSKPIE VQVGGRSVVC SDVEQQVIVI ENSBTAP00000028682/1-1032 RPDRQTVMFS ATFPRAMEAL ARRILSKPIE VQVGGRSVVC SDVEQQVIVI 601 650 ENSTTRP00000015993/1-1031 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX BACU004080/1-1158 EEEKKFLKLL ELLGHYQESG SVIIFVDKQE HADGLLKDLM RASYPCMSLH bmy_03812T0/1-1079 EEEKKFLKLL ELLGHYQESG SVIIFVDKQE HADGLLKDLM RASYPCMSLH ENSP00000346236/1-1031 EEEKKFLKLL ELLGHYQESG SVIIFVDKQE HADGLLKDLM RASYPCMSLH ENSBTAP00000028682/1-1032 EEEKKFLKLL ELLGHYQESG SVIIFVDKQE HADGLLKDLM RASYPCMSLH 651 700 ENSTTRP00000015993/1-1031 XXIDQYDRDS IINDFKNGTC KLLVATSVAA RGLDVKHLIL VVNYSCPNHY BACU004080/1-1158 GGIDQYDRDS IINDFKNGTC KLLVATSVAA RGLDVKHLIL VVNYSCPNHY bmy_03812T0/1-1079 GGIDQYDRDS IINDFKNGTC KLLVATSVAA RGLDVKHLIL VVNYSCPNHY ENSP00000346236/1-1031 GGIDQYDRDS IINDFKNGTC KLLVATSVAA RGLDVKHLIL VVNYSCPNHY ENSBTAP00000028682/1-1032 GGIDQYDRDS IINDFKNGTC KLLVATSVAA RGLDVKHLIL VVNYSCPNHY 701 750 ENSTTRP00000015993/1-1031 EDYVHRAGRT GRAGNKGFAY TFITEDQARY AGDIIKALEL SGTAVPPDLE BACU004080/1-1158 EDYVHRAGRT GRAGNKGYAY TFITEDQARY AGDIIKALEL SGTAVPPDLE bmy_03812T0/1-1079 EDYVHRAGRT GRAGNKGYAY TFITEDQARY AGDIIKALEL SGTAVPPDLE ENSP00000346236/1-1031 EDYVHRAGRT GRAGNKGYAY TFITEDQARY AGDIIKALEL SGTAVPPDLE ENSBTAP00000028682/1-1032 EDYVHRAGRT GRAGNKGYAY TFITEDQARY AGDIIKALEL SGTAVPPDLE 751 800 ENSTTRP00000015993/1-1031 KLWSDFKDQQ KAEGKIIKKS SGFSGKGFKF DETEQALANE RKKLQKAALG BACU004080/1-1158 KLWSDFKDQQ KAEGKIIKKS SGFSGKGFKF DETEQALANE RKKLQKAALG bmy_03812T0/1-1079 KLWSDFKDQQ KAEGKIIKKS SGFSGKGFKF DETEQALANE RKKLQKAALG ENSP00000346236/1-1031 KLWSDFKDQQ KAEGKIIKKS SGFSGKGFKF DETEQALANE RKKLQKAALG ENSBTAP00000028682/1-1032 KLWSDFKDQQ KAEGKIIKKS SGFSGKGFKF DETEQALANE RKKLQKAALG 801 850 ENSTTRP00000015993/1-1031 LQDSDDEDAA VDIDEQIESM FNSKKRVKDM AAPGTSSVPA PTAGNAEKLE BACU004080/1-1158 LQDSDDEDAA VDIDEQIESM FNSKKRVKDM AAPGTSSVPA PTAGNAEKLE bmy_03812T0/1-1079 LQDSDDEDAA VDIDEQIESM FNSKKRVKDM AAPGTSSVPA PTAGNAEKLE ENSP00000346236/1-1031 LQDSDDEDAA VDIDEQIESM FNSKKRVKDM AAPGTSSVPA PTAGNAEKLE ENSBTAP00000028682/1-1032 LQDSDDEDAA VDIDEQIESM FNSKKRVKDM AAPGTSSVPA PTAGNAEKLE 851 900 ENSTTRP00000015993/1-1031 IAKRLALRIN AQKNLGIESQ -DVMQQATNA ILRGGTILAP TVSAKTIAEQ BACU004080/1-1158 IAKRLALRIN AQKNLGIESQ -DVMQQATNA ILRGGTILAP TVSAKTIAEQ bmy_03812T0/1-1079 IAKRLALRIN AQKNLGIESQ -DVMQQATNA ILRGGTILAP TVSAKTIAEQ ENSP00000346236/1-1031 IAKRLALRIN AQKNLGIESQ -DVMQQATNA ILRGGTILAP TVSAKTIAEQ ENSBTAP00000028682/1-1032 IAKRLALRIN AQKNLGIESQ VDVMQQATNA ILRGGTILAP TVSAKTIAEQ 901 950 ENSTTRP00000015993/1-1031 LAEKINAKLN YVPLEKQEEE RQDGGQNESF KRYEEELEIN DFPQ------ BACU004080/1-1158 LAEKINAKLN YVPLEKQEEE RQDGGQNESF KRYEEELEIN DFPQASAN-- bmy_03812T0/1-1079 LAEKINAKLN YVPLEKQEEE RQDGGQNESF KRYEEELEIN DFPQASNRFK ENSP00000346236/1-1031 LAEKINAKLN YVPLEKQEEE RQDGGQNESF KRYEEELEIN DFPQ------ ENSBTAP00000028682/1-1032 LAEKINAKLN YVPLEKQEEE RQDGGQNESF KRYEEELEIN DFPQ------ 951 1000 ENSTTRP00000015993/1-1031 -------TAR WKVTS--KEA LQRISEYSEA AITIRGTYFP PGKEP----- BACU004080/1-1158 --ELAVQKAK AEITRLIKEE LIRLKMMHPV A-SSNPAFCG PGKPSCLSED bmy_03812T0/1-1079 LFSFYCRTAR WKVTS--KEA LQRISEYSEA AITIRGTYFP PGKEP----- ENSP00000346236/1-1031 -------TAR WKVTS--KEA LQRISEYSEA AITIRGTYFP PGKEP----- ENSBTAP00000028682/1-1032 -------TAR WKVTS--KEA LQRISEYSEA AITIRGTYFP PGKEP----- 1001 1050 ENSTTRP00000015993/1-1031 ---KEGERKI YLAIE---SA N----ELAVQ K------AKA EITR----LI BACU004080/1-1158 AMRAADQFDI YSSQQNKYSH TVSHKPMACQ RQDPLNETHL QTTSGRSIEI bmy_03812T0/1-1079 ---KEGERKI YLAIE---KH SFGWIKNLKN R------SKI HTNQ----QI ENSP00000346236/1-1031 ---KEGERKI YLAIE---SA N----ELAVQ K------AKA EITR----LI ENSBTAP00000028682/1-1032 ---KEGERKI YLAIE---SA N----ELAVQ K------AKA EITR----LI 1051 1100 ENSTTRP00000015993/1-1031 KEELIRLQNS ---------- ---------- ---------- ---------- BACU004080/1-1158 KDELKKKKNL NRSGKRGRPS GTTKSAGYRT STGRPLGTTK --AAGFKTSP bmy_03812T0/1-1079 KEDTKSYKTS GKNFLPVLVC DTCGNCCLQF TVYFKLRFLK FCLADFFFFK ENSP00000346236/1-1031 KEELIRLQNS ---------- ---------- ---------- ---------- ENSBTAP00000028682/1-1032 KEELIRLQNS ---------- ---------- ---------- ---------- 1101 1150 ENSTTRP00000015993/1-1031 ---------- ----YQPTNK GRYKVL---- ---------- ---------- BACU004080/1-1158 GRPLGTTKAA GYKVSPGRPP GSIKALSRLA DLGYGCGTAA FPYPMMHGRA bmy_03812T0/1-1079 YKKPVFANES SFSKYPQNYQ TIFKVFIKVP ---FNVNLDN IPEA------ ENSP00000346236/1-1031 ---------- ----YQPTNK GRYKVL---- ---------- ---------- ENSBTAP00000028682/1-1032 ---------- ----YQPTNK GRYKVL---- ---------- ---------- 1151 1200 ENSTTRP00000015993/1-1031 ---------- ------ BACU004080/1-1158 VHGVEETSSE IKPPNE bmy_03812T0/1-1079 ---------- ------ ENSP00000346236/1-1031 ---------- ------ ENSBTAP00000028682/1-1032 ---------- ------