KEY:
    ENSP* - Homo sapiens (Human)
    ENSBTA* - Bos taurus (Cow)
    ENSTTR* - Tursiops truncatus (Dolphin)
    bmy_* - Balaena mysticetus (Bowhead whale)
    BACU* - Balaenoptera acutorostrata (Minke whale)

Copy from below the line for a valid .msf file.

----------------------------------------------------------------------------------
                
NoName   MSF: 5  Type: P  Thu May 15 17:36:35 2014  Check: 00 ..

 Name: BACU014443/1-175          Len:    203  Check:  3387  Weight:  1.00
 Name: ENSP00000368199/1-196     Len:    203  Check:  5842  Weight:  1.00
 Name: bmy_06119T0/1-117         Len:    203  Check:  809  Weight:  1.00
 Name: ENSTTRP00000013925/1-180  Len:    203  Check:  3009  Weight:  1.00
 Name: ENSBTAP00000028693/1-188  Len:    203  Check:  9495  Weight:  1.00

//


                          1                                                   50
BACU014443/1-175          MQRGIVSPKE LSKLGLGSDM EVELQILQLP VDYREVKQRV TRIWEDLQP- 
ENSP00000368199/1-196     --MKPRTLVE LSKLGLGNET VVQLRTLELP VDYREAKRRV TGIWEDHQP- 
bmy_06119T0/1-117         ---------- ---------M SPTLAFQELP LALHKARADL S--FPNLLPP 
ENSTTRP00000013925/1-180  ---------E LSKLGLGRDM EVELRILQLP VDYREVKQRV TRIWEDLQP- 
ENSBTAP00000028693/1-188  -------LQE LSKLGLGNDM EVELQTLQLP VDYREVKQRV ARIWEALQP- 


                          51                                                 100
BACU014443/1-175          ----QLVVHV GMDPAAKAIF LEQCGKNCGY GDADIRGFHP ECGVCLPDGP 
ENSP00000368199/1-196     ----QLVVHV GMDTAAKAII LEQSGKNQGY RDADIRSFWP EGGVCLPGSP 
bmy_06119T0/1-117         RVFTQLVVHV GVDPAAKAIF LEQCGKNWGY GDADIRGFHP ERGVCLPDGP 
ENSTTRP00000013925/1-180  ----QLVVHV GVDPTAKAIF LEQCGKNWGY RDADIRGFHP ERGVCLPDGP 
ENSBTAP00000028693/1-188  ----QLVVHV GVDPAAKAIF LEQCSKNRGY RDADIRGFRP ECGVCLPDGP 


                          101                                                150
BACU014443/1-175          EVIASGVSMR AVSRRAVVEG VEVAFSRDAG RFSEPCSRRS QLH------A 
ENSP00000368199/1-196     DVLESGVCMK AVCKRVAVEG VDVIFSRDAG RYVCDYTYYL SLHHGKGCAA 
bmy_06119T0/1-117         EVIASGVSMR AVSRRAVVEG VEVAFSRDAG R----CVLFL ---------- 
ENSTTRP00000013925/1-180  EVIASGVSMR AVSRRAVVEG VEVAFSRDAG RYVCDYTYYL SLHHGNGCAA 
ENSBTAP00000028693/1-188  EVIASEVSMK AVSRRAAVQG VEVAFSRDAG RYVCDYAYYL SLHHGNGCAA 


                          151                                                200
BACU014443/1-175          TTTLKQRHRG TKASRGNWWR EFSILEVDPS PGQAFR---- ---------- 
ENSP00000368199/1-196     LIHVPPLSRG LPASLLGRAL RVIIQEMLEE VGKPKHRAQF EENSTMVLPA 
bmy_06119T0/1-117         ---------- ---------- ---------- ---------- ---------- 
ENSTTRP00000013925/1-180  LVHVPPLSPS LPASLLGKAL QVIIQEMLEE EKE------- LEDCKMVW-- 
ENSBTAP00000028693/1-188  LIHVPPLSPW LPASLLGKAL QVLIQEMLEE IEKARAQNQK LSVCSSS--- 


                          201                                                250
BACU014443/1-175          --- 
ENSP00000368199/1-196     KGN 
bmy_06119T0/1-117         -GT 
ENSTTRP00000013925/1-180  LGA 
ENSBTAP00000028693/1-188  QGE