KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:36:36 2014 Check: 00 .. Name: ENSTTRP00000001003/1-1224 Len: 1224 Check: 2892 Weight: 1.00 Name: ENSP00000263461/1-1224 Len: 1224 Check: 8584 Weight: 1.00 Name: ENSBTAP00000028704/1-1222 Len: 1224 Check: 5276 Weight: 1.00 Name: bmy_07052T0/1-1199 Len: 1224 Check: 4095 Weight: 1.00 Name: BACU004710/1-1224 Len: 1224 Check: 8907 Weight: 1.00 // 1 50 ENSTTRP00000001003/1-1224 MLPYTVNFKV SARTLTGALS AHNKAAVDXX XXXXXXXXXX XXXXXXXXXX ENSP00000263461/1-1224 MLPYTVNFKV SARTLTGALN AHNKAAVDWG WQGLIAYGCH SLVVVIDSIT ENSBTAP00000028704/1-1222 MLPYTVNFKV SARTLTGALN AHNKAAVDWG WQGLIAYGCH SLVVVIDSNT bmy_07052T0/1-1199 MLPYTVNFKV SARTLTGALS AHNKAAVDWG WQGLIAYGCH SLVVVIDSNT BACU004710/1-1224 MLPYTVNFKV SARTLTGALS AYNKAAVDWG WQGLIAYGCH SLVVVIDSNT 51 100 ENSTTRP00000001003/1-1224 XXXXXXXXXX XXXXXXVKWA RENYHHNIGS PYSLRLASAD VNGKIIVWDV ENSP00000263461/1-1224 AQTLQVLEKH KADVVKVKWA RENYHHNIGS PYCLRLASAD VNGKIIVWDV ENSBTAP00000028704/1-1222 AQTLQVLEKH KADVVKVKWA RENYHHNIGS PYSLRLASAD VNGKIIVWDV bmy_07052T0/1-1199 AQTLQVLEKH KADVVKVKWA RENYHHNIGS PYSLRLASAD VNGKIIVWDV BACU004710/1-1224 AQTLQVLEKH KADVVKVKWA RENYHHNIGS PYSLRLASAD VNGKIIVWDV 101 150 ENSTTRP00000001003/1-1224 AAGVAQCEIQ EHAKPIQDVQ WLWNQDASRD LLLAIHPPNY IVLWNADTGT ENSP00000263461/1-1224 AAGVAQCEIQ EHAKPIQDVQ WLWNQDASRD LLLAIHPPNY IVLWNADTGT ENSBTAP00000028704/1-1222 AAGVAQCEIQ EHAKPIQDVQ WLWNQDASRD LLLAIHPPNY IVLWNADTGT bmy_07052T0/1-1199 AAGVAQCEIQ EHAKPIQDVQ WLWNQDASRD LLLAIHPPNY IVLWNADTGT BACU004710/1-1224 AAGVAQCEIQ EHAKPIQDVQ WLWNQDASRD LLLAIHPPNY IVLWNADTGT 151 200 ENSTTRP00000001003/1-1224 KLWKKSYADN ILSFSFDPFD PSHLTLLTSE GIVFISDFSP SKPPSGPGKK ENSP00000263461/1-1224 KLWKKSYADN ILSFSFDPFD PSHLTLLTSE GIVFISDFSP SKPPSGPGKK ENSBTAP00000028704/1-1222 KLWKKSYADN ILSFSFDPFD PSHLTLLTSE GIVFISDFSP SKPPSGPGKK bmy_07052T0/1-1199 KLWKKSYADN ILSCSFDPFD PSHLTLLTSE GIVFISDFSP SKPPSGPGKK BACU004710/1-1224 KLWKKSYADN ILSFSFDPFD PSHLTLLTSE GIVFISDFSP SKPPSGPGKK 201 250 ENSTTRP00000001003/1-1224 VYISSPHSSP AHNKLAAATG AKKALNKVKI LITQEKPSAE FMTLNDCLQL ENSP00000263461/1-1224 VYISSPHSSP AHNKLATATG AKKALNKVKI LITQEKPSAE FITLNDCLQL ENSBTAP00000028704/1-1222 VYISSPHSSP AHNKLAAATG AKKALNKVKI LITQEKPSAE FITLNDCLQL bmy_07052T0/1-1199 VYISSPHSSP AHSKLAAATG AKKALNKVKI LITQEKP--- ---------- BACU004710/1-1224 VYISSPHSSP AHSKLAAATG AKKALNKVKI LITQEKPSAE FITLNDCLQL 251 300 ENSTTRP00000001003/1-1224 AYLPSKRNHM LLLYPREILI LDLEVNQTVG VIAIERTGVP FLQVIPCFQR ENSP00000263461/1-1224 AYLPSKRNHM LLLYPREILI LDLEVNQTVG VIAIERTGVP FLQVIPCFQR ENSBTAP00000028704/1-1222 AYLPSKRNHM LLLYPREILI LDLEVNQTVG VIAIERTGVP FLQVIPCFQR bmy_07052T0/1-1199 ------RNHM LLLYPREILI LDLEVNQTVG VIAIERTGVP FLQVIPCFQR BACU004710/1-1224 AYLPSKRNHM LLLYPREILI LDLEVNQTVG VIAIERTGVP FLQVIPCFQR 301 350 ENSTTRP00000001003/1-1224 DGLFCLHENG CITLRVRRSY NSIFTTSNEE PDPDPVQELT YDLRSQCDAI ENSP00000263461/1-1224 DGLFCLHENG CITLRVRRSY NNIFTTSNEE PDPDPVQELT YDLRSQCDAI ENSBTAP00000028704/1-1222 DGLFCLHENG CITLRVRRSY SSIF-TSNEE PDPDPVQELT YDLRSQCDAI bmy_07052T0/1-1199 DGLFCLHENG CITLRVRRSY NSIFTTSSEE PDPDPVQELT YDLRSQCDAI BACU004710/1-1224 DGLFCLHENG CITLRVRRSY NSIFTTSSEE PDPDPVQELT YDLRSQCDAI 351 400 ENSTTRP00000001003/1-1224 RVTKTVRPFS MVCCPVNENA AALIVSDGRV MIWELKSAVC NRNSRNSSSG ENSP00000263461/1-1224 RVTKTVRPFS MVCCPVNENA AALVVSDGRV MIWELKSAVC NRNSRNSSSG ENSBTAP00000028704/1-1222 RVTKTVRPFS MVCCPVNENA AALIVSDGRV MIWELKSAVC NRNSRSSSSG bmy_07052T0/1-1199 RVTKTVRPFS MVCCPVNENA AALIVSDGRV MIWELKSAVC NRNSRNSSSG BACU004710/1-1224 RVTKTVRPFS MVCCPVNENA AALIVSDGRV MIWELKSAVC NRNSRNSSSG 401 450 ENSTTRP00000001003/1-1224 VSPLYSPVSF CGIPVGVLQN KLPDLSLDNM IGQSAIAGEE HPKGSMLQEV ENSP00000263461/1-1224 VSPLYSPVSF CGIPVGVLQN KLPDLSLDNM IGQSAIAGEE HPRGSILREV ENSBTAP00000028704/1-1222 VSPLYSPVSF CGIPVGVLQN KLPDLSLDNM IGQSAVAGEE HPKGSILQEV bmy_07052T0/1-1199 VSPLYSPVSF CGIPVGVLQN KLPDLSLDNM IGQSAIAGEE HPKGSILQEV BACU004710/1-1224 VSPLYSPVSF CGIPVGVLQN KLPDLSLDNM IGQSAIAGEE HPKGSILQEV 451 500 ENSTTRP00000001003/1-1224 QLKFLLTGLL SGLPSPQFAI RMCPPLTTKN IKMYQPLLAV GTSNGSVLVY ENSP00000263461/1-1224 HLKFLLTGLL SGLPAPQFAI RMCPPLTTKN IKMYQPLLAV GTSNGSVLVY ENSBTAP00000028704/1-1222 QLKFLLTGLL SGLPSPQFAI RMCPPLTTKN IKMYQPLLAV GTSNGSVLVY bmy_07052T0/1-1199 QLKFLLTGLL SGLPSPQFAI RMCPPLTTKN IKMYQPLLAV GTSNGSVLVY BACU004710/1-1224 QLKFLLTGLL SGLPSPQFAI RMCPPLTTKN IKMYQPLLAV GTSNGSVLVY 501 550 ENSTTRP00000001003/1-1224 HLTSGLLHKE LSIHSCEVKG IEWTSLTGFL SFSTSTPNNM GLVRNELQLV ENSP00000263461/1-1224 HLTSGLLHKE LSIHSCEVKG IEWTSLTSFL SFATSTPNNM GLVRNELQLV ENSBTAP00000028704/1-1222 HLTSGLLHKE LSIHSCEVKG IEWTSLTGFL SFATSTPNNM GLVRNELQLV bmy_07052T0/1-1199 HLTSGLLHKE LSIHSCEVKG IEWTSLTGFL SFSTSTPNNM GLVRNELQLV BACU004710/1-1224 HLTSGLLHKE LSIHSCEVKG IEWTSLTGFL SFSTSTPNNM GLVRNELQLV 551 600 ENSTTRP00000001003/1-1224 DLPTGRSIAF RGERGNDESP IEMIKVSHLK QYLAVVFKDK PLELWDVRTC ENSP00000263461/1-1224 DLPTGRSIAF RGERGNDESA IEMIKVSHLK QYLAVVFRDK PLELWDVRTC ENSBTAP00000028704/1-1222 DLPTGRSIAF RGERGNDESP IEMIKVSHLK QYLAVVFKDK PLELWDVRTC bmy_07052T0/1-1199 DLPTGRSIAF RGERGNDESP IEMIKVSHLK QYLAVVFKDK PLELWDVRTC BACU004710/1-1224 DLPTGRSIAF RGERGNDESP IEMIKVSHLK QYLAVVFKDK PLELWDVRTC 601 650 ENSTTRP00000001003/1-1224 TILREMSKNF PAITALEWSP SHNLKSLRKK QLATREAMAR QTVVSDTELS ENSP00000263461/1-1224 TLLREMSKNF PTITALEWSP SHNLKSLRKK QLATREAMAR QTVVSDTELS ENSBTAP00000028704/1-1222 TILREMSKNF PAITALEWSP SHNLKSLRKK QLATREAMAR QTVVSDTELS bmy_07052T0/1-1199 TILREMSKNF PAITALEWSP SHNLKSLRKK QLATREAMAR QTVVSDTELS BACU004710/1-1224 TILREMSKNF PAITALEWSP SHNLKSLRKK QLATREAMAR QTVVSDTELS 651 700 ENSTTRP00000001003/1-1224 VVESSVISLL QEAESKSELS QNISAREHFV FTDNDGQVYH LTVEGNSVKE ENSP00000263461/1-1224 IVESSVISLL QEAESKSELS QNISAREHFV FTDIDGQVYH LTVEGNSVKD ENSBTAP00000028704/1-1222 VVESSVISLL QEAESKSELS QNISAREHFV FTDNDGQVYH LTVEGNSVKD bmy_07052T0/1-1199 VVESSVISLL QEAESKSELS QNISAREHFV FTDNDGQVYH LTVEGNSVKD BACU004710/1-1224 VVESSVISLL QEAESKSELS QNISAREHFV FTDSDGQVYH LTVEGNSVKD 701 750 ENSTTRP00000001003/1-1224 SARIPPDGSM GSITCIAWKG DTLVLGDVDG NLNFWDLKGR VSRGIPTHRS ENSP00000263461/1-1224 SARIPPDGSM GSITCIAWKG DTLVLGDMDG NLNFWDLKGR VSRGIPTHRS ENSBTAP00000028704/1-1222 SARIPPDGSM GSITCIAWKG DTLVLGDMDG NLNFWDLKGR VSRGIPTHRS bmy_07052T0/1-1199 SARIPPDGSM GSITCIAWKG DTLVLGDMDG NLNFWDLKGR VSRGIPTHRS BACU004710/1-1224 SARIPPDGSM GSITCIAWKG DTLVLGDMDG NLNFWDLKGR VSRGIPTHRS 751 800 ENSTTRP00000001003/1-1224 WVRKIRFAPG KGNQKLIAMY NDGAEVWDTK EVQMVSSLRS GRNVTFRILD ENSP00000263461/1-1224 WVRKIRFAPG KGNQKLIAMY NDGAEVWDTK EVQMVSSLRS GRNVTFRILD ENSBTAP00000028704/1-1222 WVKKIRFAPG KGNQKLIAMY NDGAEVWDSK EVQMVSSLRS GRNVTFRILD bmy_07052T0/1-1199 WVRKIRFAPG KGNQKLIAMY NDGAEVWDAK EVQMVSSLRS GRNVTFRILD BACU004710/1-1224 WVRKIRFAPG KGNQKLIAMY NDGAEVWDTK EVQMVSSLRS GRNVTFRILD 801 850 ENSTTRP00000001003/1-1224 VDWCTSDKVI LASDDGCIRV LEMSMKSTCF RMDEQELTEP VWCPYLLVPR ENSP00000263461/1-1224 VDWCTSDKVI LASDDGCIRV LEMSMKSACF RMDEQELTEP VWCPYLLVPR ENSBTAP00000028704/1-1222 VDWCTSDKVI LASDDGCIRV LEMSMKSTCF RMDEQELTEP VWCPYLLVPR bmy_07052T0/1-1199 VDWCTSDKVI LASDDGCIRV LEMSMKSTCF RMDEQELTEP VWCPYLLVPR BACU004710/1-1224 VDWCTSDKVI LASDDGCIRV LEMSMKSTCF RMDEQELTEP VWCPYLLVPR 851 900 ENSTTRP00000001003/1-1224 AALALKAFLL HQPWNGRYSL DISHVDYPEN EEIKNLLQEQ LNSLSNDIKK ENSP00000263461/1-1224 ASLALKAFLL HQPWNGQYSL DISHVDYPEN EEIKNLLQEQ LNSLSNDIKK ENSBTAP00000028704/1-1222 AALALKAFLL HQPWNGQYSL DISHVDYPEN EEIKNLLQEQ LNSLSNDIKK bmy_07052T0/1-1199 AALALKAFLL HQPWNGRYSL DISHVDYPEN EEIKNLLQEQ LNSLSTDIKK BACU004710/1-1224 AALALKAFLL HQPWNGRYSL DISHVDYPEN EEIKNLLQEQ LNSLSNDIKK 901 950 ENSTTRP00000001003/1-1224 LLLDPEFTLL QRCLLVSRLY GDESELHFWT VAAHYLHSLS QEKAASTPAA ENSP00000263461/1-1224 LLLDPEFTLL QRCLLVSRLY GDESELHFWT VAAHYLHSLS QEKSASTTAP ENSBTAP00000028704/1-1222 LLLDPEFTLL QRCLLVSRLY GDESELHFWT VAAHYLHSLS QEKASSTPVA bmy_07052T0/1-1199 LLLDPEFTLL QRCLLVSRLY GDESELHFWT VAAHYLHSLS QEKAASTPAA BACU004710/1-1224 LLLDPEFTLL QRCLLVSRLY GDESELHFWT VAAHYLHSLS QEKAASTPAA 951 1000 ENSTTRP00000001003/1-1224 KETAPWDKVN NPLDICYDVL CENAYFQKFQ LERVNLQEVK RSTYDHTRKC ENSP00000263461/1-1224 KEAAPRDKLS NPLDICYDVL CENAYFQKFQ LERVNLQEVK RSTYDHTRKC ENSBTAP00000028704/1-1222 KEAAPQDRVN NPLDICYDIL CENAYFQKFQ LERVNLQEVK RSTYDHTRKC bmy_07052T0/1-1199 KETAPQDKVN NPLDICYDVL CENAYFQKFQ LERVNLQEVK RSTYDHTRKC BACU004710/1-1224 KEAAPRDKVN NPLDICYDVL CENAYFQKFQ LERVNLQEVK RSTYDHTRKC 1001 1050 ENSTTRP00000001003/1-1224 TDQLLLLGQT DRAVQLLLET SADNQHYYCD SLKACLVTTV TSSGPSQSTI ENSP00000263461/1-1224 TDQLLLLGQT DRAVQLLLET SADNQHYYCD SLKACLVTTV TSSGPSQSTI ENSBTAP00000028704/1-1222 TDQLLLLGQT DRAVQLLLET SADNQHYYCD SLKACLVTTV TSSGPSQSTI bmy_07052T0/1-1199 TDQLLLLGQT DRAVQLLLET SADNQHYYCD SLKACLVTTV TSSGPSQSTI BACU004710/1-1224 TDQLLLLGQT DRAVQLLLET SADNQHYYCD SLKACLVTTV TSSGPSQSTI 1051 1100 ENSTTRP00000001003/1-1224 KLVATNMIAN GKLAEGVQLL CLIDKAADAC RYLQTYGEWN RAAWLAKVRL ENSP00000263461/1-1224 KLVATNMIAN GKLAEGVQLL CLIDKAADAC RYLQTYGEWN RAAWLAKVRL ENSBTAP00000028704/1-1222 KLVATNMIAN GKLAEGVQLL CLIDKAADAC RYLQTYGEWN RAAWLAKVRL bmy_07052T0/1-1199 KLVATNMIAN GKLAEGVQLL CLIDKAADAC RYLQTYGEWS RAAWLAKVRL BACU004710/1-1224 KLVATNMIAN GKLAEGVQLL CLIDKAADAC RYLQTYGEWS RAAWLAKVRL 1101 1150 ENSTTRP00000001003/1-1224 NPEECADVLK RWVDHLCSPQ VNQKSKALLV LLSLGCFSSV AETLHSMRYF ENSP00000263461/1-1224 NPEECADVLR RWVDHLCSPQ VNQKSKALLV LLSLGCFFSV AETLHSMRYF ENSBTAP00000028704/1-1222 NSEECADVLK RWVDHLCSPQ VNQKSKALLV LLSLGCFSSV AETLHSMRYF bmy_07052T0/1-1199 NSEECADVLK RWVDHLCSPQ VNQKSKALLV LLSLGCFSSV AETLHSMRYF BACU004710/1-1224 NSEECADVLK RWVDHLCSPQ VNQKSKALLV LLSLGCFSSV AETLHSMRYF 1151 1200 ENSTTRP00000001003/1-1224 DRAALFVEAC LKYGAIEVSE DTEKLISAIY ADYARSLKNL GFKQGAVFLA ENSP00000263461/1-1224 DRAALFVEAC LKYGAFEVTE DTEKLITAIY ADYARSLKNL GFKQGAVLFA ENSBTAP00000028704/1-1222 DRAALFVEAC LKYGAIEVSE DTEKLISAIY ADYARSLKNL GFKQGAVLFA bmy_07052T0/1-1199 DRAALFVEAC LKYGAI---- --EKLISAIY ADYARSLKNL GFKQGAFFFA BACU004710/1-1224 DRAALFVEAC LKYGAIEVSE DTEKLISAIY ADYARSLKNL GFKQGAFFFA 1201 1250 ENSTTRP00000001003/1-1224 SKAGAAGKDL LNELEFPKQE LTEE ENSP00000263461/1-1224 SKAGAAGKDL LNELESPKEE PIEE ENSBTAP00000028704/1-1222 SKAGAAGRDL LNELESPKQE LTD- bmy_07052T0/1-1199 SKAGAAGKDL LNELEFPKQE VTEE BACU004710/1-1224 SKAGAAGKDL LNELEFPKQE VTEE