KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:36:38 2014 Check: 00 .. Name: ENSP00000355923/1-1187 Len: 1247 Check: 5384 Weight: 1.00 Name: ENSBTAP00000028717/1-1190 Len: 1247 Check: 7839 Weight: 1.00 Name: bmy_12258T0/1-1114 Len: 1247 Check: 9042 Weight: 1.00 Name: BACU006052/1-1243 Len: 1247 Check: 6800 Weight: 1.00 Name: ENSTTRP00000003269/1-1157 Len: 1247 Check: 8044 Weight: 1.00 // 1 50 ENSP00000355923/1-1187 MPFGLKLRRT RRYNVLSKN- CFVTRIRLLD SNVIECTLSV ESTGQECLEA ENSBTAP00000028717/1-1190 MPFGLKLRRT RRYNVLSKN- CFVTRIRLLD SSVIECTLSV ESTGQECLEA bmy_12258T0/1-1114 MALAAVLLWS SRPDLYRHHL CILL------ -----CTQGF TSRGIDVV-- BACU006052/1-1243 MPFGLKLRRT RRYNVLSKN- CFVTRIRLLD SNVIECTLSV ESTGQECLEA ENSTTRP00000003269/1-1157 MPFGLKLRRT RRYNVLSKN- CFVTRIRLLD SNVIECTLSV ESTGQECLEA 51 100 ENSP00000355923/1-1187 VAQRLELRET HYFGLWFLSK SQQARWVELE KPLKKHLDKF ANEPLLFFGV ENSBTAP00000028717/1-1190 VAQRLELRET HYFGLWFLSK SQQARWVELE KPLKKHLDKF ANEPLLFFGV bmy_12258T0/1-1114 ---------- ---GMYS--- ---------- ---------- ---------- BACU006052/1-1243 VAQRLELRET HYFGLWFLSK SQQARWVELE KPLKKHLDKF ANEPLLFFGV ENSTTRP00000003269/1-1157 VAQRLELRET HYFGLWFLSK SQQARWVELE KPLKKHLDKF ANEPLLFFGV 101 150 ENSP00000355923/1-1187 MFYVPNVSWL QQEAT----- --------RY QYYLQVK-KD VLEGRLR--- ENSBTAP00000028717/1-1190 MFYVPNVSWL QQEAT----- --------RY QYYLQVK-KD VLEGRLR--- bmy_12258T0/1-1114 ---------- ---------- --------KY QYYLQVK-KD VLEGRLR--- BACU006052/1-1243 MFYVPNVSWL QQEATSVLKC TFNMGHSVRS QAFLSCEYEE MCIKRLREHG ENSTTRP00000003269/1-1157 MFYVPNVSWL QQEAT----- --------RY QYYLQVK-KD VLEGRLR--- 151 200 ENSP00000355923/1-1187 ---------- ----CTL--- ---------- ---------- --DQVIRLAG ENSBTAP00000028717/1-1190 ---------- ----CSL--- ---------- ---------- --EQVIRLAG bmy_12258T0/1-1114 ---------- ----CTL--- ---------- ---------- --EQVIRLAG BACU006052/1-1243 HKPTFNLNDW EQSWCSLLVD WDSLLPSVGW IYNRGNLLIH FIEVIIVDES ENSTTRP00000003269/1-1157 ---------- ----CTL--- ---------- ---------- --EQVIRLAG 201 250 ENSP00000355923/1-1187 LAVQADFGDY NQFDSQDFLR EYVLFPMDLA LEEAVLEELT QKVAQEHKAH ENSBTAP00000028717/1-1190 LAVQADFGDY NQFDSQDFLR EYVLFPMDLA LEEAVLEELT QKVAQERKAH bmy_12258T0/1-1114 LAVQADFGDY NQFDSQDFLR EYVLFPMDLA LEEAVLEELT QKVAQEHKAH BACU006052/1-1243 WDQQADFGDY NQFDSQDFLR EYVLFPMDLA LEEAVLEELT QKVAQEHKAH ENSTTRP00000003269/1-1157 LAVQADFGDY NQFDSQDFLR EYVLFPMDLA LEEAVLEELT QKVAQEHKAH 251 300 ENSP00000355923/1-1187 SGILPAEAEL MYINEVERLD GFGQEIFPVK DNHGNCVHLG IFFMGIFVRN ENSBTAP00000028717/1-1190 SGILPAEAEL MYINEVERLD GFGQEIFPVK DNHGNSVHLG IFFMGIFVRN bmy_12258T0/1-1114 SGILPAEAEL MYINEVERLD GFGQEIFPVK DNHGNSVHLG IFFMGIFVRN BACU006052/1-1243 SGILPAEAEL MYINEVERLD GFGQEIFPVK DNHGNSVHLG IFFMGIFVRN ENSTTRP00000003269/1-1157 SGILPAEAEL MYINEVERLD GFGQEIFPVK DNHGNSVHLG IFFMGIFVRN 301 350 ENSP00000355923/1-1187 RIGRQAVIYR WNDMGNITHN KSTILVELIN KEETALFHTD DIENAKYISR ENSBTAP00000028717/1-1190 RIGRQAVIYR WNDMGNITHN KSTILVELVN KEETALFHTE DIENAKYISR bmy_12258T0/1-1114 RIGRQAVIYR WNDMGNITHN KSTILVELIS KEETALFHTD DIENAKYISR BACU006052/1-1243 RIGRQAVIYR WNDMGNITHN KSTILVELIS KEETALFHTD DIENAKYISR ENSTTRP00000003269/1-1157 RIGRQAVIYR WNDMGNITHN KSTILVELIS KEETALFHTD DIENAKYISR 351 400 ENSP00000355923/1-1187 LFATRHKFYK QNKICTEQSN SPPPIRRQPT WSRSSLPRQQ PYILPPVHVQ ENSBTAP00000028717/1-1190 LFATRHKFYK QNKICTEQSN SPPPIRRQPT WSRSSLPRQQ PYILPPMHVQ bmy_12258T0/1-1114 LFATRHKFYK QNKICTEQSN SPPPIRRQPT WSRSSLPRQQ PYILPPMHVQ BACU006052/1-1243 LFATRHKFYK QNKICTEQSN SPPPIRRQPT WSRSSLPRQQ PYILPPMHVQ ENSTTRP00000003269/1-1157 LFATRHKFYK QNKICTEQSN SPPPIRRQPT WSRSSLPRQQ PYILPPMHVQ 401 450 ENSP00000355923/1-1187 CGEHYSETHT SQDSIFHGNE EALYCNSHNS LDLNYLNGTV TN-GSVCSVH ENSBTAP00000028717/1-1190 CGEHYSETHT SQDSIFHGNE EALYCNSHNS LDLSYLNGTV TNGGSVCSVH bmy_12258T0/1-1114 CGEHYSETHT SQDSIFHGNE EALYCNSHNS LDLSYINGTV TN-GSVCSIH BACU006052/1-1243 CGEHYSETHT SQDSIFHGNE EALYCNSHNS LDLSYINGTV TN-GSVCSIH ENSTTRP00000003269/1-1157 CGEHYSETHT SQDSIFHGNE EALYCNSHNS LDLSYINGTV TN-GSVCSIH 451 500 ENSP00000355923/1-1187 SVNSLNCSQS FIQASPVSSN LSIPGSDIMR ADYIPSHRHS AIIVPSYRPT ENSBTAP00000028717/1-1190 SVNSLSCSQS FIQASPVSSN LSIPGSDIMR ADYIPSHRHS AIIVPSYRPT bmy_12258T0/1-1114 SVNSLSCSQS FIQASPVSSN LSIPGSDIMR ADYIPSHRHS AIIVPSYRPT BACU006052/1-1243 SVNSLSCSQS FIQASPVSSN LSIPGSDIMR ADYIPSHRHS AIIVPSYRPT ENSTTRP00000003269/1-1157 SVNSLSCSQS FIQASPVSSN LSIPGSDIMR ADYIPSHRHS AIIVPSYRPT 501 550 ENSP00000355923/1-1187 PDYETVMRQM KRGILHTDSQ SQSLRNLNII NTHAYNQPED LVYSQPEMRE ENSBTAP00000028717/1-1190 PDYETVMRQM KRGVVHTDSQ SQSLRNLNII NTHAYNQPED LVYSQPEMRE bmy_12258T0/1-1114 PDYETVMRQM KRGVVHTDSQ SQSLRNLNII NTHAYNQPED LVYSQPEMRE BACU006052/1-1243 PDYETVMRQM KRGVVHTDSQ SQSLRNLNII NTHAYNQPED LVYSQPEMRE ENSTTRP00000003269/1-1157 PDYETVMRQM KRGVVHTDSQ SQSLRNLNII NTHAYNQPED LVYSQPEMRE 551 600 ENSP00000355923/1-1187 RHPYTVPYGP QGVYSNKLVS PSDQRNPKNN VVPSKPGA-S AISHTVSTPE ENSBTAP00000028717/1-1190 RHPYTIPYGP QGGYGNKLVS PSDQLNPTNP TVPSKPGGPS AISHTVSTPE bmy_12258T0/1-1114 RHPYTVPYGP QGGYGNKLVS PSDQINPKNT TVPSKPGA-S AISHTVSTPE BACU006052/1-1243 RHPYTVPYGP QGGYGNKLVS PSDQINPKNT TVPSKPGA-S AISHTVSTPE ENSTTRP00000003269/1-1157 RHPYTVPYGP QGGYGNKLVS PSDQINPKNT TVPSKPGA-S AISHTVSTPE 601 650 ENSP00000355923/1-1187 LANMQLQGSH NYSTAHMLKN YLFRPPPPYP RPRPATSTPD LASHRHKYVS ENSBTAP00000028717/1-1190 LANMQLQGAH SYNAAHVLKN YLFRPPPPYP RPRPATSTPD LASHRHKYVS bmy_12258T0/1-1114 LANMQLQGTY NYNTAHMLKN YLFRPPPPYP RPRPATSTPD LASHRHKYVS BACU006052/1-1243 LANMQLQGTY KYNTAHMLKN YLFRPPPPYP RPRPATSTPD LASHRHKYVS ENSTTRP00000003269/1-1157 LANMQLQGTY NYNTAHMLKN YLFRPPPPYP RPRPATSTPD LASHRHKYVS 651 700 ENSP00000355923/1-1187 GSSPDLVTRK VQLSVKTFQE DSSPVVHQSL QEVSEPLTAT KHHGTVNKRH ENSBTAP00000028717/1-1190 GSSPDLVTRK VQLSVKTFQE DSSPVVHQSL QEVSEPLTAT KHHGAVHKRH bmy_12258T0/1-1114 GSSPDLVTRK VQLSVKTFQE DSSPVVHQSL QEVSEPLTAT KHHGTVHKRH BACU006052/1-1243 GSSPDLVTRK VQLSVKTFQE DSSPVVHQSL QEVSEPLTAT KHHGAVHKRH ENSTTRP00000003269/1-1157 GSSPDLVTRK VQLSVKTFQE DSSPVVHQSL QEVSEPLTAT KHHGTVHKRH 701 750 ENSP00000355923/1-1187 SLEVMNSMVR GMEAMTLKSL HLPMARRNTL REQGPPEEGS GSHEVPQLPQ ENSBTAP00000028717/1-1190 SLEAMSSMVR GMEAMTLKSL NIPMARRSTL REPGPPEEGP GSHEVPQLPQ bmy_12258T0/1-1114 SLEVMSSMVR GMEAMTLKSL NIPMARRNTL REPGPPEEVP GSHEVPQLPE BACU006052/1-1243 SLEVMSSMVR GMEAMTLKSL NIPMARRNTL REPGPPEEVP GSHEVPQLPE ENSTTRP00000003269/1-1157 SLEVMSSMVR GMEAMTLKSL NIPMARRNTL REPGPPEEVP GSHEVPQLPE 751 800 ENSP00000355923/1-1187 YHHKKTFSDA TMLIHSSES- EEEEEEAPES VPQIPMLREK MEYSAQLQAA ENSBTAP00000028717/1-1190 YHHKKTFSDA TMLIHSSESE EEEEEEAPDP VPQIPVLREK VEYSTQLQAA bmy_12258T0/1-1114 YHHKKTFSDA TMLIHSSES- EEEEEEALEP VPQIPVVREK MEYSAQLQAA BACU006052/1-1243 YHHKKTFSDA TMLIHSSES- EEEEEEAPEP VPQIPALREE MEYSAQLQAA ENSTTRP00000003269/1-1157 YHHRKTFSDA TMLIHSSES- EEEEEEAPDP VPQIPVLREK MEYSAQLQAA 801 850 ENSP00000355923/1-1187 LARIPNKPPP EYPGPRKSVS NGALRQDQAS LPPAMARARV LRHGPAKAIS ENSBTAP00000028717/1-1190 LARIPNKPPP EYPGPRKSVS NGALRQDQAC LPPAVARARL LRHGPAKAIS bmy_12258T0/1-1114 LARIPNKPPP EYPGPRKSVS NGALGQDQVC LPPAIARARV LRQGPAKAIS BACU006052/1-1243 LARIPNKPPP EYPGPRKSVS NGALGQDQVC LPPAVARARV LRQGPAKAIS ENSTTRP00000003269/1-1157 LARIPNKPPP EYPGPRKSVS NGALGQDQVC LPPAIARARV LRQGPAKAIS 851 900 ENSP00000355923/1-1187 MSRTDPPAVN GASLGPSISE PDLTSVKERV KKEPVKERPV SEMFSLEDSI ENSBTAP00000028717/1-1190 VSRADQLAVN GASLGPSISE PDLTSVKERV KKEPVKERPV SEMFSLEDSI bmy_12258T0/1-1114 ISRADQTAIN GSSLGPSISE PDLTSVKERV KKEPVKERPV SEMFSLEDSI BACU006052/1-1243 VSRADQTAIN GSSLGPSISE PDLTSVKERV KKEPVKERPV SEMFSLEDSI ENSTTRP00000003269/1-1157 ISRADQMAIN GSSLGPSISE PDLTSVKERV KKEPVKERPV SEMFSLEDSI 901 950 ENSP00000355923/1-1187 IEREMMIRNL EKQKMAGLEA QKRPLMLAAL NGLSVARVSG REENRVDATR ENSBTAP00000028717/1-1190 IEREMMIRNL EKQKMACLEA QKRPLMLATL NGLSVARGSG REESRVDATR bmy_12258T0/1-1114 IEREMMIRNL EKQKMAGLEA QKRPLMLAAL NGLSVARGSG REESRVDATR BACU006052/1-1243 IEREMMIRNL EKQKMAGLEA QKRPLMLAAL NGLSVARGSG REESRVDATR ENSTTRP00000003269/1-1157 IEREMMIRNL EKQKMAGLEA QKRPLMLAAL NGLSVARGSG REESRVDATR 951 1000 ENSP00000355923/1-1187 VPMDERFRTL KKKLEEGMVF TEYEQIPKKK ANGIFSTAAL PENAERSRIR ENSBTAP00000028717/1-1190 VPMDERFRTL KKKLEEGMVF TEYEQIPKKK ANGIFSTAAL PENAERSRIR bmy_12258T0/1-1114 VPMDERFRTL KKKLEEGMVF TEYEQIPKKK ANGVFSTAAL PENAERSRIR BACU006052/1-1243 VPMDERFRTL KKKLEEGMVF TEYEQIPKKK ANGVFSTAAL PENAERSRIR ENSTTRP00000003269/1-1157 VPMDERFRTL KKKLEEGMVF TEYEQIPKKK ANGVFSTAAL PENAERSRIR 1001 1050 ENSP00000355923/1-1187 EVVPYEENRV ELIPTKENNT GYINASHIKV VVGGAEWHYI ATQGPLPHTC ENSBTAP00000028717/1-1190 EVVPYEENRV ELIPTKENNT GYINASHIKV VVGGAEWHYI ATQGPLPHTC bmy_12258T0/1-1114 EVVPYEENRV ELIPTKENNT GYINASHIKV VVGGAEWHYI ATQGPLPHTC BACU006052/1-1243 EVVPYEENRV ELIPTKENNT GYINASHIKV VVGGAEWHYI ATQGPLPHTC ENSTTRP00000003269/1-1157 EVVPYEENRV ELIPTKENNT GYINASHIKV VVGGAEWHYI ATQGPLPHTC 1051 1100 ENSP00000355923/1-1187 HDFWQMVWEQ GVNVIAMVTA EEEGGRTKSH RYWPKLGSKH SSATYGKFKV ENSBTAP00000028717/1-1190 HDFWQMVWEQ GANVIAMVTA EEEGGRTKSH RYWPKLGSKH SSATYGKFKV bmy_12258T0/1-1114 HDFWQMVWEQ GANVIAMVTA EEEGGRTKSH RYWPKLGSKH SSATYGKFKV BACU006052/1-1243 HDFWQMVWEQ GANVIAMVTA EEEGGRTKSH RYWPKLGSKH SSATYGKFKV ENSTTRP00000003269/1-1157 HDFWQMVWEQ GANVIAMVTA EEEGGRTKSH RYWPKLGSKH SSATYGKFKV 1101 1150 ENSP00000355923/1-1187 TTKFRTDSVC YATTGLKVKH LLSGQERTVW HLQYTDWPDH GCPEDVQGFL ENSBTAP00000028717/1-1190 TTKFRTDSGC YATTGLKVKH LLSGQERTVW HLQYTDWPDH GCPEDVQGFL bmy_12258T0/1-1114 TTKFRTDSGC YATTGLKVKH LLSGQERTVW HLQYTDWPDH GCPEDVQGFL BACU006052/1-1243 TTKFRTDSGC YATTGLKVKH LLSGQERTVW HLQYTDWPDH GCPEDVQGFL ENSTTRP00000003269/1-1157 TTKFRTDSGC YATTGLKVKH LLSGQERTVW HLQYTDWPDH GCPEDVQGFL 1151 1200 ENSP00000355923/1-1187 SYLEEIQSVR RHTNSMLEGT KNRHPPIVVH CSAGVGRTGV LILSELMIYC ENSBTAP00000028717/1-1190 SYLEEIQSVR RHTNSMLEGT RNLRPPIVVH CSAGVGRTGV VILSELMIYC bmy_12258T0/1-1114 SYLEEIQSVR RHTNSMLEST KNQHPPIVVH CSAGVGRTGV VILSELMIYC BACU006052/1-1243 SYLEEIQSVR RHTNSMLEST KNQHPPIVVH CSAGVGRTGV VILSELMIYC ENSTTRP00000003269/1-1157 SYLEEIQSVR RHTNSMLEST KNQHPPIVVH CSAGVGRTGV VILSELMIYC 1201 1250 ENSP00000355923/1-1187 LEHNEKVEVP MMLRLLREQR MFMIQTIAQY KFVYQVLIQF LQNSRLI ENSBTAP00000028717/1-1190 LEHNEKVEVP MMLRLLREQR MFMIQTIAQY KFVYQVLIQF LQNSRLI bmy_12258T0/1-1114 LEHNEKVEVP MMLRLLREQR MFMIQTIAQY KFVYQVLIQF LQNSRLI BACU006052/1-1243 LEHNEKVEVP VMLRLLREQR MFMIQTIAQY KFVYQVLIQF LQNSRLI ENSTTRP00000003269/1-1157 LEHNEKVEVP MMLRLLR--- ---------- ---------- -------