KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:36:39 2014 Check: 00 .. Name: ENSBTAP00000028721/1-538 Len: 729 Check: 908 Weight: 1.00 Name: ENSP00000011619/1-729 Len: 729 Check: 65 Weight: 1.00 Name: ENSTTRP00000007390/1-630 Len: 729 Check: 4430 Weight: 1.00 Name: bmy_00671T0/1-426 Len: 729 Check: 4829 Weight: 1.00 Name: BACU019363/1-591 Len: 729 Check: 2880 Weight: 1.00 // 1 50 ENSBTAP00000028721/1-538 ---------- ---------- ---------- ---------- ---------- ENSP00000011619/1-729 MSGQPPPPPP QQQQQQQQLS PPPPAALAPV SGVVLPAPPA VSAGSSPAGS ENSTTRP00000007390/1-630 ---------- ---------- ---------- ---------- ---------- bmy_00671T0/1-426 ---------- ---------- ---------- ---------- ---------- BACU019363/1-591 ---------- ---------- ---------- ---------- ---------- 51 100 ENSBTAP00000028721/1-538 ---------- ---------- ---------- ---------- ---------- ENSP00000011619/1-729 PGGGAGGEGL GAAAAALLLH PPPPPPPATA APPPPPPPPP PPASAAAPAS ENSTTRP00000007390/1-630 ---------- ---------- ---------- ---------- -----AAAAS bmy_00671T0/1-426 ---------- ---------- ---------- ---------- ---------- BACU019363/1-591 ---------- ---------- ---------- ---------- ---------- 101 150 ENSBTAP00000028721/1-538 ---------- ---------- ---------- ---------- ---------- ENSP00000011619/1-729 GPPAPPGLAA GPGPAGGAPT PALVAGSSAA APFPHGDSAL NEQEKELQRR ENSTTRP00000007390/1-630 APPAPPDLTA GPDPAGSGPA PAEAPDSSAA DPFPHGDSAL NEQEKELQRR bmy_00671T0/1-426 ---------- ---------- ---------- ---------- ---------- BACU019363/1-591 ---------- ---------- ---------- ------DSAL NEQEKELQRR 151 200 ENSBTAP00000028721/1-538 ---------- ---------- ---------- ---------- GHGKTPKDAA ENSP00000011619/1-729 LKRLYPAVDE QETPLPRSWS PKDKFSYIGL SQNNLRVHYK GHGKTPKDAA ENSTTRP00000007390/1-630 LKRLYPAVDE QETPLPRSWS PKDKFSYIGL SQNNLRVHYK GHGKTPKDAA bmy_00671T0/1-426 ---------- ---------- ---------- ---------- ---------- BACU019363/1-591 LKRLYPAVDE QETPLPRSWS PKDKFSYIGL SQNNLRVHYK GHGKTPKDAA 201 250 ENSBTAP00000028721/1-538 SVRATHPIPA ACGIYYFEVK IVSKGRDGYM GIGLSAQGVN MNRLPGWDKH ENSP00000011619/1-729 SVRATHPIPA ACGIYYFEVK IVSKGRDGYM GIGLSAQGVN MNRLPGWDKH ENSTTRP00000007390/1-630 SVRATHPIPA ACGIYYFEVK IVSKGRDGYM GIGLSAQGVN MNRLPGWDKH bmy_00671T0/1-426 ---------- ---------- ---------- --------IA FTDLP----- BACU019363/1-591 SVRATHPIPA ACGIYYFEVK IVSKGRDGYM GIGLSAQGVN MNRLPGWDKH 251 300 ENSBTAP00000028721/1-538 SYGYHGDDGH SFCSSGTGQP YGPTFTTGDV IGCCVNLINN TCFYTKNGHS ENSP00000011619/1-729 SYGYHGDDGH SFCSSGTGQP YGPTFTTGDV IGCCVNLINN TCFYTKNGHS ENSTTRP00000007390/1-630 SYGYHGDDGH SFCSSGTGQP YGPTFTTGDV IGCCVNLINN TCFYTKNGHS bmy_00671T0/1-426 ---------- ---------- ---------- ---------- ---------- BACU019363/1-591 SYGYHGDDGH SFCSSGTGQP YGPTFTTGDV IGCCVNLINN TCFYTKNGHS 301 350 ENSBTAP00000028721/1-538 LGIAFTDLPP NLYPTVGLQT PGEVVDANFG QHPFVFDIED YMREWRTKTQ ENSP00000011619/1-729 LGIAFTDLPP NLYPTVGLQT PGEVVDANFG QHPFVFDIED YMREWRTKIQ ENSTTRP00000007390/1-630 L-IAFTDLPP NLYPTVGLQT PGEVVDANFG QHPFVFDIED YMREWRTKIQ bmy_00671T0/1-426 ---------P NLYPTVGLQT PGEVVDANFG QHPFVFDIED YMREWRTKIQ BACU019363/1-591 L-VKCVVLQP NLYPTVGLQT PGEVVDANFG QHPFVFDIED YMREWRTKIQ 351 400 ENSBTAP00000028721/1-538 AQIDRFPVGD REGEWQTMIQ KMVSSYLVHH GYCATAEAFA RSTDQTVLEE ENSP00000011619/1-729 AQIDRFPIGD REGEWQTMIQ KMVSSYLVHH GYCATAEAFA RSTDQTVLEE ENSTTRP00000007390/1-630 AQIDRFPVGD REGEWQTMIQ KMVSSYLVHH GYCATAEAFA RSTDQTVLEE bmy_00671T0/1-426 AQIDRFPVGD REGEWQTMIQ KMVSSYLVHH GYCATAEAFA RSTDQTVLEE BACU019363/1-591 AQIDRFPVGD REGEWQTMIQ KMVSSYLVHH GYCATAEAFA RSTDQTVLEE 401 450 ENSBTAP00000028721/1-538 LASIKNRQRI QKLVLAGRMG EAIETTQQLY PSLLERNPNL LFTLKVRQFI ENSP00000011619/1-729 LASIKNRQRI QKLVLAGRMG EAIETTQQLY PSLLERNPNL LFTLKVRQFI ENSTTRP00000007390/1-630 LASIKNRQRI QKLVLAGRMG EAIETTQQLY PSLLERNPNL LFTLKVRQFI bmy_00671T0/1-426 LASIKNRQRI QKLVLAGRMG EAIETTQQLY PSLLERNPNL LFTLKVRQFI BACU019363/1-591 LASIKNRQRI QKLVLAGRMG EAIETTQQLY PSLLERNPNL LFTLKVRQFI 451 500 ENSBTAP00000028721/1-538 EMVNGTDSEV RCLGGRSPKS QDSYPVSPRP FSSPSMSPSH GVNIHSLASG ENSP00000011619/1-729 EMVNGTDSEV RCLGGRSPKS QDSYPVSPRP FSSPSMSPSH GMNIHNLASG ENSTTRP00000007390/1-630 EMVNGTDSEV RCLGGRSPKS QDSYPVSPRP FSSPSMSPSH GMSVHSLASG bmy_00671T0/1-426 EMVNGTDSEV RCLGGRSPKS QDSYPVSPRP FSSPSMSPSH GMSVHSLASG BACU019363/1-591 EMVNGTDSEV RCLGGRSPKS QDSYPVSPRP FSSPSMSPSH GMSVHSLASG 501 550 ENSBTAP00000028721/1-538 KGSTAHFSGF DNCSNGVISN KAHQAYCHS- KHQPCGLNVP ELNSLNTSRS ENSP00000011619/1-729 KGSTAHFSGF ESCSNGVISN KAHQSYCHSN KHQSSNLNVP ELNSINMSRS ENSTTRP00000007390/1-630 KGSAAHFSGF ESCSNGVISN KAHQSYCHS- KHQSSSLNVP ELNSINMSRS bmy_00671T0/1-426 KGSAAHFSGF ESCSNGVISN KAHQSYCHS- KHQSSSLNVP ELNSINMSRS BACU019363/1-591 KGSAAHFSGF ESCSNGVISN KAHQSYCHS- KHQSSSLNVP ELNSINMSRS 551 600 ENSBTAP00000028721/1-538 QQVSSFTSND VDMETDHYSN GVGETSSNGF LNGSSKHDHE MEDCDTEMEV ENSP00000011619/1-729 QQVNNFTSND VDMETDHYSN GVGETSSNGF LNGSSKHDHE MEDCDTEMEV ENSTTRP00000007390/1-630 QQVNNFTSND VDMETDHYSN GVGETSSNGF LNGSSKHDHE MEDCDTEMEV bmy_00671T0/1-426 QQVNNFTSND VDMETDHYSN GVGETSSNGF LNGSSKHDHE MEDCDTEMEV BACU019363/1-591 QQVNNFTSND VDMETDHYSN GVGETSSNGF LNGSSKHDHE MEDCDTEMEV 601 650 ENSBTAP00000028721/1-538 DSSQLRRQLC GGSQAAIERM IHFGRELQAM SEQLRRECGK NTANKKMLKD ENSP00000011619/1-729 DSSQLRRQLC GGSQAAIERM IHFGRELQAM SEQLRRDCGK NTANKKMLKD ENSTTRP00000007390/1-630 DSSQLRRQLC GGSQAAIERM IHFGRELQAM SEQLRRECGK NTANKKMLKD bmy_00671T0/1-426 DSSQLRRQLC GGSQAAIERM IHFGRELQAM SEQLRRECGK NTANKKMLKD BACU019363/1-591 DSSQLRRQLC GGSQAAIERM IHFGRELQAM SEQLRRECGK NTANKKMLKD 651 700 ENSBTAP00000028721/1-538 AFSLLAYSDP WNSPVGNQLD PIQREPVCSA LNSAILETHN LPKQPPLALA ENSP00000011619/1-729 AFSLLAYSDP WNSPVGNQLD PIQREPVCSA LNSAILETHN LPKQPPLALA ENSTTRP00000007390/1-630 AFSLLAYSDP WNSPVGNQLD PIQREPVCSA LNSAILETHN LPKQ--LALA bmy_00671T0/1-426 AFSLLAYSDP WNSPVGNQLD PLQREPVCSA LNSAILETHN LPKQPPLALA BACU019363/1-591 AFSLLAYSDP WNSPVGNQLD PLQREPVCSA LNSAILETHN LPKQPPLALA 701 750 ENSBTAP00000028721/1-538 MGQATQCLGL MARSGIGSCA FATVDDYLH ENSP00000011619/1-729 MGQATQCLGL MARSGIGSCA FATVEDYLH ENSTTRP00000007390/1-630 MGQATQYLGL MAQSGIGSCA FATVGDYLH bmy_00671T0/1-426 MGQATQCLGL MARSGIGSCA FATVEDYLH BACU019363/1-591 MGQATQCLGL MARSGIGSCA FATVEDYLH