KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:36:39 2014 Check: 00 .. Name: ENSP00000279068/1-385 Len: 487 Check: 715 Weight: 1.00 Name: ENSBTAP00000028723/1-382 Len: 487 Check: 4180 Weight: 1.00 Name: bmy_20331T0/1-444 Len: 487 Check: 730 Weight: 1.00 Name: BACU011265/1-305 Len: 487 Check: 8426 Weight: 1.00 // 1 50 ENSP00000279068/1-385 MSGSSGT--- ---------- ---------- ---------P YLGSKISLIS ENSBTAP00000028723/1-382 ---------- ---------- ---------- ---------- ---------- bmy_20331T0/1-444 MPGDRSDWIW ANPGAALSTL SSPTRFSRSR DALEHRLAAP CSRLKRLSAL BACU011265/1-305 MP-------- ---------- ---------- ---------P YSQLAASSLL 51 100 ENSP00000279068/1-385 KAQIRYEGIL YTIDTDNSTV ALAKVRSFGT EDRPTDRPAP PREEIYEYII ENSBTAP00000028723/1-382 ---------- ---------- ----VRSFGT EDRPTDRPAP PREEIYEYII bmy_20331T0/1-444 IQTLRSVGLP FC----DRSL PAGAVRSFGT EDRPTDRPAP PREEVYEYII BACU011265/1-305 SQQY------ ---------- ----AASLGL EKLVS----- ---------- 101 150 ENSP00000279068/1-385 FRGSDIKDIT VCEPPKAQHT LPQDPAIVQS SLGSASASPF QPHVPYSPFR ENSBTAP00000028723/1-382 FRGSDIKDIT VCEPPKAQHT LPQDPAIVQS SLGSGSASSF QPHVPYSPFR bmy_20331T0/1-444 FRGSDIKDIT VCEPPKAQHA LPQDPAIVQS SLGSGSASSF QPHVPYSPFR BACU011265/1-305 ---------- ---PP----- ---------- ----ASAAAS SPSSSPSP-- 151 200 ENSP00000279068/1-385 GMAPYGPLAA SSLLSQQYAA SLGL------ ---------- ---------- ENSBTAP00000028723/1-382 GMPPYSQLAA SSLLSQQYAA SLGLEKLVSP PASAAASSPS SSPSPQPVSE bmy_20331T0/1-444 GMPPYSQLAA SSLLSQQYAA SLGL------ ---------- ---------- BACU011265/1-305 --QPVSELDM SS-ESHQLTS K--------- ---------- ---------- 201 250 ENSP00000279068/1-385 ---------- ---GAGFPSI PVGKSPMVEQ AVQTGSADNL NAKKLLPGKG ENSBTAP00000028723/1-382 LDMSSEPHQL TSKGASFPSV SVSKSPMVEQ AVQTGSLDNL NSKKLLPGKG bmy_20331T0/1-444 ---------- ---GAGFPAV SVSKSPMVEQ AVQTGSLDNL NTKKLLPGKG BACU011265/1-305 ---------- ---GAGFPAV SVSKSPMVEQ AVQTGSLDNL NTKKLLPGKG 251 300 ENSP00000279068/1-385 TTGTQLNGRQ AQPSSKTASD VVQPAAVQAQ GQVNDENRRP QRRRSGNRRT ENSBTAP00000028723/1-382 TVGMQLNGRP APPGTKATTD IAQPAAVQTQ GQVNDENRRP QRRRSGNRRT bmy_20331T0/1-444 TAGMQLNGRP APPSSKAASD VAQPAAVQTQ GQVNDENRRP QRRRSGNRRT BACU011265/1-305 TAGMQLNGRP APPSSKAASD VAQPAAVQTQ GQVNDENRRP QRRRSGNRRT 301 350 ENSP00000279068/1-385 RNRSRGQNRP TNVKENTIKF EGDFDFESAN AQFNREELDK EFKKKLNFKD ENSBTAP00000028723/1-382 RNRSRGQSRP TNIKENTIKF EGDFDFESAN AQFNREELDK EFKKKLNFKD bmy_20331T0/1-444 RNRSRGQSRP TNVKENTIKF EGDFDFESAN AQFNREELDK EFKKKLNFKD BACU011265/1-305 RNRSRGQSRP TNVKENTIKF EGDFDFESAN AQFNREELDK EFKKKLNFKD 351 400 ENSP00000279068/1-385 DKAEKGEEKD LAVVTQSAEA PAEEDLLGPN CYYDKSKSFF DNISSELKTS ENSBTAP00000028723/1-382 DKAEKGEEKD LAVVTQSDEA PADEDHLGPN CYYDKSKSFF DNISSELKTS bmy_20331T0/1-444 DKAEKGEEKD LAVVTQSDEA PAEEDHLGPN CYYDKSKSFF DNISSELKTS BACU011265/1-305 DKAEKGEEKD LAVVTQSDEA PAEEDHLGPN CYYDKSKSFF DNISSELKTS 401 450 ENSP00000279068/1-385 SRRTTWAEER KLNTETFGVS GRFLRGRSSR GGFRGGRGNG TTRRNPTSHR ENSBTAP00000028723/1-382 SRRTTWAEER KLNTETFGVS GRFLRGRSFR GGFRGGRGNG ATRRNPTSHR bmy_20331T0/1-444 SRRTTWAEER KLNTETFGVS GRFLRGRSFR GGFRGGRGNG AARRNPTSHR BACU011265/1-305 SRRTTWAEER KLNTETFGVS GRFLRGRSFR GGFRGGRGNG AARRNPTSHR 451 500 ENSP00000279068/1-385 AGTGRV---- ---------- ---------- ------- ENSBTAP00000028723/1-382 AGTGRV---- ---------- ---------- ------- bmy_20331T0/1-444 AGTGRVLSLK RHRRQAVSTR TLENAALPAG DVGHFVY BACU011265/1-305 AGTGRV---- ---------- ---------- -------