KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:36:40 2014 Check: 00 .. Name: ENSP00000334186/1-955 Len: 1119 Check: 1100 Weight: 1.00 Name: ENSBTAP00000028738/1-951 Len: 1119 Check: 1622 Weight: 1.00 Name: bmy_17452T0/1-1062 Len: 1119 Check: 4537 Weight: 1.00 Name: BACU005402/1-974 Len: 1119 Check: 1997 Weight: 1.00 Name: ENSTTRP00000010464/1-952 Len: 1119 Check: 2725 Weight: 1.00 // 1 50 ENSP00000334186/1-955 ---------- -------MWA ---------- ------GL-- ---------- ENSBTAP00000028738/1-951 ---------- -------MWA ---------- ------GL-- ---------- bmy_17452T0/1-1062 LTPIALRRKP TPKPGQGVWA EDETPPPGVP DLCPRPGLRA SPDGHRPAGG BACU005402/1-974 ---------- -------MWA ---------- ------GL-- ---------- ENSTTRP00000010464/1-952 ---------- -------MWA ---------- ------GL-- ---------- 51 100 ENSP00000334186/1-955 ---------- ---------- ---------- ---------- LLRAAC---V ENSBTAP00000028738/1-951 ---------- ---------- ---------- ---------- LLRAAC---V bmy_17452T0/1-1062 RGGAFAFCVF RSEVPEPPPA QPSAAFPRGP VPLLSASPAP LLGSACQLGA BACU005402/1-974 ---------- ---------- ---------- ---------- LLRAAC---V ENSTTRP00000010464/1-952 ---------- ---------- ---------- ---------- LLRAAC---V 101 150 ENSP00000334186/1-955 ALLLP-GAPA RGYTGRKP-- ------PGHF AAERRR--LG PHVCLSG--F ENSBTAP00000028738/1-951 ALLLP-GTPA RGYTGRKT-- ------PGHF GAERRR--LG PHVCLSG--F bmy_17452T0/1-1062 RWFAPRGARR RGE-GRQPPP PRAAPEPSRA GGTRRRRSCG PD-CSSGPPA BACU005402/1-974 ALLLP-GTPA RGYTGRKT-- ------PGHF GAERRR--LG PHVCLSG--F ENSTTRP00000010464/1-952 ALLLP-GTPA RGYTGRKT-- ------PGHF GAERRR--LG PHVCLSG--F 151 200 ENSP00000334186/1-955 GSGCCPGWAP SMGGGHCT-- ---------L PLCSFGCGSG ICIAPNVCSC ENSBTAP00000028738/1-951 GSGCCPGWAP SMGSGHCT-- ---------L PLCSFGCGSG ICIAPNVCSC bmy_17452T0/1-1062 SRSCCRGPRP AATPGGRRPG TSGPRDAGWA PTSAFR-GSG VAAALAGRPP BACU005402/1-974 GSGCCPGWAP SMGSGHCT-- ---------L PLCSFGCGSG ICIAPNVCSC ENSTTRP00000010464/1-952 GSGCCPGWAP SMGSGHCT-- ---------L PLCSFGCGSG ICIAPNVCSC 201 250 ENSP00000334186/1-955 QDGEQGATCP ETHGPCGEYG CDLTCNHGGC QEVARVCPVG FSMTETAVGI ENSBTAP00000028738/1-951 QDGEQGPTCP EAHGPCGEYG CDLTCNHGGC QEVARVCPVG FSMTETAVGI bmy_17452T0/1-1062 WAVDTAP-FV KAHGPCGEYG CDLTCNHGGC QEVARVCPVG FSMTETAIGI BACU005402/1-974 QDGEQGPTCP EAHGPCGEYG CDLTCNHGGC QEVARVCPVG FSMTETAIGI ENSTTRP00000010464/1-952 QDGEQGP-CP EAHGPCGEYG CDLTCNHGGC QEVARVCPVG FSMTETAIGI 251 300 ENSP00000334186/1-955 RCTDIDECVT SSCEGHCVNT EGGFVCECGP GMQLSADRHS CQDTDECLGT ENSBTAP00000028738/1-951 RCTDIDECLS SSCEGHCVNT EGGFVCECGP GMQLSADRHS CQDTDECLGT bmy_17452T0/1-1062 RCTDIDECVS SSCEGHCVNT EGGFVCECGP GMQLSADRHS CQDTDECLGT BACU005402/1-974 RCTDIDECLS SSCEGHCVNT EGGFVCECGP GMQLSADRHS CQDTDECLGT ENSTTRP00000010464/1-952 RCTDVDECLS SSCEGHCVNT EGGFVCECGP GMQLSADRHS CQDTDECLGT 301 350 ENSP00000334186/1-955 PCQQRCKNSI GSYKCSCRTG FHLHGNRHSC VDVNECRRPL ERRVCHHSCH ENSBTAP00000028738/1-951 PCQQRCKNSI GSYRCSCRTG FHLHGNRHSC VDVNECRRPL ERRVCHHSCH bmy_17452T0/1-1062 PCQQRCKNSI GSYRCSCRTG FHLHGNRHSC VDVNECRRPL ERRVCHHSCH BACU005402/1-974 PCQQRCKNSI GSYRCSCRTG FHLHGNRHSC VDVNECRRPL ERRVCHHSCH ENSTTRP00000010464/1-952 PCQQRCKNSI GSYRCSCRTG FHLHGNRHSC VDVNECRRPL ERRVCHHSCH 351 400 ENSP00000334186/1-955 NTVGSFLCTC RPGFRLRADR VSCEAFPKAV LAPSAILQPR QHPSKMLLLL ENSBTAP00000028738/1-951 NTVGSFLCTC RPGFRLRADR VSCEAFPKAV LAPSAILQPL QHPPKMLLLL bmy_17452T0/1-1062 NTVGSFLCTC QPGFRLRADR VSCEAFPKAV LAPSAILQPL QHPPKMLLLL BACU005402/1-974 NTVGSFLCTC QPGFRLRADR VSCEAFPKAV LAPSAILQPL QHPPKMLLLL ENSTTRP00000010464/1-952 NTVGSFLCTC RPGFRLRADR VSCEAFPKAV LAPSAILQPL QHPPKMLLLL 401 450 ENSP00000334186/1-955 PEAGRPALSP GHSPPSGAPG PPAGVRTTRL PSPTPRLPTS SPSAPVWLLS ENSBTAP00000028738/1-951 PEAGRPALSP GHSPPSGAPG PPTGVRSTRP PPPMPALSTS SPSAPTPLLS bmy_17452T0/1-1062 PEAGRPALSP GHSPPSGAPG PPTGVRTTRL PPPTPALPTA SASALTQLLS BACU005402/1-974 PEAGRPALSP GHSPPSGAPG PPTGVRTTRL PSPTPALPTA SASALMQRLS ENSTTRP00000010464/1-952 PEAGRPALSP GHSPPSGAPG PPTGVRTTRL PSPTPALPTS SASALTQLLS 451 500 ENSP00000334186/1-955 TLLATPVPTA SLLGNLRPPS LLQGEVMGTP SSPRGPESPR LAAGPSPCWH ENSBTAP00000028738/1-951 TPVATPVPHP SLLGTLRPPA QLQ-KTAVTP PLPRGPETTR LAPGPSACWH bmy_17452T0/1-1062 TPMATPVPSP SLLGTLRPPS QIQEKVVVTP SLPRGPEATQ LAPGPSACWH BACU005402/1-974 TPVATPVPSP SLLGTLRPPS QIQEKVVVTP SLPRGPEATQ LAPGPSACWH ENSTTRP00000010464/1-952 APMATPVPSP SPLGTLRPPS RIQEKVVVTP SLPRGPEATQ LAPGPSACWH 501 550 ENSP00000334186/1-955 LGAMHESRSR WTEPGCSQCW CEDGKVTCEK VRCEAACSHP IPSRDGGCCP ENSBTAP00000028738/1-951 LEATYESGSR WTEPGCSQCW CEDGEVTCEK VTCEAACSHP IPSRDGGCCP bmy_17452T0/1-1062 LGAMHESGSR WTEPGCSQCW CEDGEVTCEK VTCEAACSHP VPSGDGGCCP BACU005402/1-974 LGAMHESGSR WTEPGCSQCW CEVG------ ---------- ---------- ENSTTRP00000010464/1-952 LGAMHESGSR WTEPGCSQCW CEDGEVTCEK VTCEAACSHP IPSGDGGCCP 551 600 ENSP00000334186/1-955 SCTGCFHSGV VRAEGDVFSP PNENCTVCVC LAGNVSCISP ECPSGPCQTP ENSBTAP00000028738/1-951 SCTGCFHSGV IRAEGDVFSP PNQNCTVCVC LAGNVSCISP ECPPDPCQAS bmy_17452T0/1-1062 LCTGCFHSGV IRAEGDVFSP PNQNCTVCVC LAGNVSCISP ECPPGPCQAS BACU005402/1-974 ----CFHSGV IRAEGDVFSP PNQNCTVCVC LAGNVSCISP ECPPGPCQAS ENSTTRP00000010464/1-952 LCTGCFHSGV IRAEGDVFSP PNQNCTVCVC LAGNVSCISP ECPPGLCQAS 601 650 ENSP00000334186/1-955 PQTDCCTCVP VRCYFHGRWY ADGAVFSGGG DECTTCVCQN GEVECSFMPC ENSBTAP00000028738/1-951 PKSDCCTCVP VRCYFHGRWY ADGAVFSGGG DECTTCVCQN GEVECSFTPC bmy_17452T0/1-1062 PKSDCCTCVP VRCYFHGRWY ADGAVFSGGG DECTTCVCQN GEVECSFTPC BACU005402/1-974 PKSDCCTCVP VRCYFHGRWY ADGAVFSGGG DECTTCVCQN GEVECSFTPC ENSTTRP00000010464/1-952 LKSDCCTCVP VRCYFHGQWY ADGAVFSGGG DECTTCVCQN GEVECSFTPC 651 700 ENSP00000334186/1-955 PELACPREEW RLGPGQCCFT CQEPTPSTGC SLDDNGVEFP IGQIWSPGDP ENSBTAP00000028738/1-951 PELDCPREEW WLGPGQCCYA CREPVPMTGC SLDDNGVEFP VGQIWSPGDP bmy_17452T0/1-1062 PELDCPREEW WLGPGQCCFT CREPAPMTGC SLDDNGVEFP VGQIWSPGDP BACU005402/1-974 PELDCPREEW WLGPGQCCFT CREPAPMTGC SLDDNGVEFP VGQIWSPGDP ENSTTRP00000010464/1-952 PELDCPREEW WLGPGQCCFT CREPAPMTGC SLDDNGVEFP VGQIWSPGDP 701 750 ENSP00000334186/1-955 CELCICQADG SVSCKRTDCV DSCPHPIRIP GQCCPDCSAG CTYTGRIFYN ENSBTAP00000028738/1-951 CELCICQADG SVSCKRTDCV DSCPHPIRIP GQCCPDCSAG CTYTGRIFYN bmy_17452T0/1-1062 CELCICQADG SVSCKRTDCV DSCPHPIRIP GQCCPDCSAG CTYTGRIFYN BACU005402/1-974 CELCICQADG SVSCKRTDCV DSCPHPIRIP GQCCPDCSAG CTYTGRIFYN ENSTTRP00000010464/1-952 CELCICQADG SVSCKRTDCV DSCPHPIRIP GQCCPDCSAG CTYTGRIFYN 751 800 ENSP00000334186/1-955 NETFPSVLDP CLSCICL--- ---------- ---------- ---------- ENSBTAP00000028738/1-951 NQTFPSVLDP CLSCICL--- ---------- ---------- ---------- bmy_17452T0/1-1062 NQTFASVLDP CLSCICL--- ---------- ---------- ---------- BACU005402/1-974 NQTFASVLDP CLSCICLVRP PRPDPCLRKL PRNSHQLLNP GGKIQRPPRE ENSTTRP00000010464/1-952 NQTFPSVLDP CLSCICL--- ---------- ---------- ---------- 801 850 ENSP00000334186/1-955 ---------- -------LGS VACSPVDCPI TCTYPFHPDG ECCPVCRDCN ENSBTAP00000028738/1-951 ---------- -------LGS VACSPVDCPI TCSYPFHPDG ECCPVCQDCN bmy_17452T0/1-1062 ---------- -------LGS VACSPVDCPI TCSYPFHPDG ECCPVCRDCN BACU005402/1-974 WSLLDHGESW LPSALPGLGS VACSPVDCPI TCSYPFHPDG ECCPVCRDCN ENSTTRP00000010464/1-952 ---------- -------LGS VACSPVDCPI TCSYPFHPDG ECCPVCRDCN 851 900 ENSP00000334186/1-955 YEGRKVANGQ VFTLDDEPCT RCTCQLGEVS CEKVPCQRAC ADPALLPGDC ENSBTAP00000028738/1-951 YEGRKVGNGQ VFTLDDEPCT QCVCQLGEVT CEKVSCQQAC SDRTMPRRDC bmy_17452T0/1-1062 YEGRKVGNGQ VFTLDDEPCT QCICQLGEVS CEKMPCRRAC SDPSTPPRDC BACU005402/1-974 YEGRKVGNGQ VFTLDDEPCT QCICQLGEVS CEKMPCQQAC SDPSTPPRDC ENSTTRP00000010464/1-952 YEGRKVGNXX XXXXXXXXXX XXXXXLGEVS CEKTPCQQAC SDPSTPPRDC 901 950 ENSP00000334186/1-955 CSSCPDSLSP LEEKQGLSPH GNVAFSKAGR SLHGDTEAPV NCSSCPGPPT ENSBTAP00000028738/1-951 CSSCPDSIPS LEESRALSPR GDVELSKAAR SPRGDPEAPI NCSSCPGPPE bmy_17452T0/1-1062 CFSCPDS--- LEESRGLSPR GDFELSKVAR TPRGDPEALL NCSSCPGPPA BACU005402/1-974 CFSCPDS--- LEESRGLSPR GDVEFSKVAR TPRGDPEALL NCSSCPGPPA ENSTTRP00000010464/1-952 CSFCPDS--- LEESRGLSPR GDVELSKVAR TPRGDPEALL NCSSCPGPPA 951 1000 ENSP00000334186/1-955 ASPSRPVLHL LQLLLRTNLM KTQTLPTSPA GAHGPHSLAL GLTATFPGEP ENSBTAP00000028738/1-951 VAPQRPALQL LQLLLRMNLS NPQTLPVSPS GAQASPSPSS RPGG-----P bmy_17452T0/1-1062 VSPQRPALQL LQLLLRTNLS SMQTIPVSPS GAQALPSPPL GPGAMFPGEP BACU005402/1-974 VSPQRPVLQL LQLLLRTNLS NMQTIPVSPS GAQALPSPPL GPGGMFPGEP ENSTTRP00000010464/1-952 VSPRRPALQL LQLLLRTNLS DMQTIPVSPS GAQALPSPPL GPGGMFPGEP 1001 1050 ENSP00000334186/1-955 GAS--PRLSP GPSTPPGAPT LPLASPGAPQ PPPVTPERSF SASGAQIVSR ENSBTAP00000028738/1-951 RASQPPQPSL GPPIPPGASS LPPASPMAPG PPPLTPALPS SASGAHSASR bmy_17452T0/1-1062 GASQPPRPSP GPSIPPGASS LPPASPGAPG PPPVTPEPSS SASGAHTASR BACU005402/1-974 WASQPPRPSP GPSIPPGASS LPPASPGAPG PPPVTPEPSS SASGAHTASR ENSTTRP00000010464/1-952 GASQPPWPSP GPSIPPGASS LPPASPGAPG PPPVTPEPSS SASGAHTASR 1051 1100 ENSP00000334186/1-955 WPPLPGTLLT EASALSMMDP SPSKTPITLL GPRVLSPTTS RLSTALAATT ENSBTAP00000028738/1-951 RPSLPAAIPR GASALSTTGP GASETPVTVL RPRRSSPATS RLSAALVATA bmy_17452T0/1-1062 QPSLPATIRR RASALSMMGP SPSEAPVTIL RPRRLSPATS RLSAALAATA BACU005402/1-974 QPSLPATIRR RASALSTMGP SPSEAPVAIL RPRRLSPATS RLSAALAATS ENSTTRP00000010464/1-952 QPSLPATIRR RASALSTMGP SPSEAPVTIL RPRRLSPATS RLSAALAATA 1101 1150 ENSP00000334186/1-955 HPGPQQPPVG ASRGEESTM ENSBTAP00000028738/1-951 SPGPRQPTLG TSQEEESTV bmy_17452T0/1-1062 SPGPQEPTMG PSQEEESTV BACU005402/1-974 SPGPQEPTMG PSPEEESTV ENSTTRP00000010464/1-952 SPGPQEPTMG PSQ-EESTV