KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:36:42 2014 Check: 00 .. Name: ENSP00000353646/1-1191 Len: 1216 Check: 1887 Weight: 1.00 Name: ENSBTAP00000028741/1-1199 Len: 1216 Check: 7201 Weight: 1.00 Name: ENSTTRP00000000432/1-1195 Len: 1216 Check: 1960 Weight: 1.00 Name: bmy_05270T0/1-1198 Len: 1216 Check: 7268 Weight: 1.00 Name: BACU018101/1-999 Len: 1216 Check: 2846 Weight: 1.00 // 1 50 ENSP00000353646/1-1191 MERPLENGDE SPDSQGHATD WRFAVCSFRD AWEEEEPASQ MHVKDPGPPR ENSBTAP00000028741/1-1199 MEGPLEDGDE SPESQGHATD WRFAVCSFRD AWDEGEPAPQ MQAKNPHPPS ENSTTRP00000000432/1-1195 MEGPLEEGDE SSASQGHPTD WRFAVCSFRD AWDEGEAALQ MQ--DPNPPS bmy_05270T0/1-1198 MEGPLEDGDE SLASQGHATD WRFAVCSFRD AWDEGEPAPQ MQ--NPNPPS BACU018101/1-999 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000353646/1-1191 PPAGATQDEE LQGSPLSRKF QLPPA---AD ESGDAQRGTV ESSSVLSEGP ENSBTAP00000028741/1-1199 PPAGAAQGEE LQGSPLPGEL QSPTGQMVAD ESGHGQKGTL RGSSVHMKEP ENSTTRP00000000432/1-1195 PPAGAAQGEG LQGSPLPSEL QSTPGQKVAD GSGDGQRGIL GGSLVQREEP bmy_05270T0/1-1198 PPAGAAQGEG LQGSPLPGEL QSPPGQKVAD GSGDGQRGVL GGSSVQWEEP BACU018101/1-999 ---------- ---------- ---------- ---------- ---------- 101 150 ENSP00000353646/1-1191 GPSGVESLLC PMSSHLSLAQ GESDTPGVGL VGDPGPSRAM PSGLSPGALD ENSBTAP00000028741/1-1199 ASSGVKILLS PMSSHLSLAQ GENDSQGGDL AGDSVSGRVM PVRLDPEVLD ENSTTRP00000000432/1-1195 ASSGMEILLC PMFSHLSLAQ GENDSQGGGL AGDSVSGRAM PIRLDPEGLD bmy_05270T0/1-1198 ASSGMEILLC PMSSHLSLAE DENDSQGGGL AGDSVSGRAM PIRLDPEGLD BACU018101/1-999 ---------- ---------- ---------- ---------M PISLDPEGLD 151 200 ENSP00000353646/1-1191 SDPVGLGDPL SEI-SKLLEA APSG---SGL PKPADCLLAQ DLCWELLASG ENSBTAP00000028741/1-1199 SDPVNHGGLL SETSSELLEA GNEGWARSRL LKSTDYLLAQ DIAWELLASG ENSTTRP00000000432/1-1195 SDPVDLGDLL SETSSELLEA DPNG---SRL LKSTDCLLAQ DLAWELLASG bmy_05270T0/1-1198 SDPVNLGGLL SETSSELLEA DPNG---SRL LKSTDCLLAQ DLAWELLASG BACU018101/1-999 SDPVNLGDLL SETSSELLEA DPNG---SRL LKSTGCLLAQ DLAWELLASG 201 250 ENSP00000353646/1-1191 MATLPGTRDV QGRAVLLLCA HSPAWLQSEC SSQELIRLLL YLRSIPRPEV ENSBTAP00000028741/1-1199 MAALPGTRDV EGRAVLLLCA HNSAWNHPKC NSHELVRLLL YLQSIPRPKV ENSTTRP00000000432/1-1195 LAALPGTRDV EGRAVLLLSA HNPAWLHPKC SSHELIRLLL YLRSIPRPKV bmy_05270T0/1-1198 LAALPGTRDV EGRAVLLLSA HNPAWLHPKC SSHELIRLLL YLRSIPRPKV BACU018101/1-999 LAALPG---- ---------- ---------- ---------- ---------- 251 300 ENSP00000353646/1-1191 QALGLTVLVD ARICAPSSSL FSGLSQ---- ---------L QEAAPGAVYQ ENSBTAP00000028741/1-1199 QTLGLTVLVD ARICSPSSSI FWGLSQ---- ---------L QEAVPGSVHR ENSTTRP00000000432/1-1195 QALGLTVLVD ARICSPISSL FWGLSQ---- ---------L QEAAPGSVHQ bmy_05270T0/1-1198 QALGLTVLVD ARICSPISSL FWGLSQLQVR LGAGLSSDSL QEAAPGSVHQ BACU018101/1-999 --LGAGLSSD S--------- ---------- ---------L QEAAPGSVHQ 301 350 ENSP00000353646/1-1191 VLLVGSTLLK EVPSGLQLEQ LPS-QSLLTH IPTAGLPTSL GGGLPYCHQA ENSBTAP00000028741/1-1199 VLLVGK-LPE EVPAGLQIEH LSSHQSLLTH ISTSELLTSL GGGLPYCHQA ENSTTRP00000000432/1-1195 VLLIGK-MPQ EVPSGLQLEQ LSSDQSLLTH ISTSGLPTSL GGGLPYCHQA bmy_05270T0/1-1198 VLLVGK-MPQ EVPSGLQLEQ LSSHQSLLTH ISTSGLPTSL GGGLPYCHQA BACU018101/1-999 VLLVGK-MPQ EVPSGLQLEQ LSSHQSLLTH ISTSGLPTSL GGGLPYCHQA 351 400 ENSP00000353646/1-1191 WLDFRRRLEA LLQNCQAACA LLQGAIESVK AVPQPMEPGE VGQLLQQTEV ENSBTAP00000028741/1-1199 WLDFRMRLEA LLQSCQVVCA LLQGAIESMK AVPQPVESGE VGQLLQQARV ENSTTRP00000000432/1-1195 WLGFRMRLET LQQSCQVLCA LLQGAIESMK AVPQPMESGE VGRLLQQARV bmy_05270T0/1-1198 WLGFRMRLET LLQSCQVVCA LLQGAIESMK AVPQPMESGE VGRLLRQARV BACU018101/1-999 WLGFRMRLET LLQSCQVVCA LLQGATESMK AVPQPMESGE VGRLLRQARV 401 450 ENSP00000353646/1-1191 LMQQVLDSPW LAWLQCQGGR ELTWLKQEVP EVTLSPDYRT AMDKADELYD ENSBTAP00000028741/1-1199 LMKHVLDSPR LAWLQCQGAL ELTWLKQEVP EVTLSPDYRS AVDEVEELYG ENSTTRP00000000432/1-1195 LMQHVLDSPQ LAWLQCQGAL ELAWLKQEVP EVTLSPDYRP AVDEVEELYG bmy_05270T0/1-1198 LMQHVLDSPR LAWLQCQGAL ELAWLKQEVP EVTLSPDYRP AVDEVEELYG BACU018101/1-999 LMQHVLDSPR LAWLQCQGAL ELARLKQEVP EVTLSPDYRP AVDEVEELYG 451 500 ENSP00000353646/1-1191 RVDGLLHQLT LQSNQRIQAL ELVQTLEARE SGLHQIEVWL QQVGWPALEE ENSBTAP00000028741/1-1199 RVDGLLHQLT LQGNRRIQAL ELVQTLEAQE GELHQMEVWL QQVGWPALEE ENSTTRP00000000432/1-1195 RVDGLLHQLT LQSNQRVQAL ELVQMLEAQE GELHQIEVWL QQVGWPALEE bmy_05270T0/1-1198 RVDGLLHQLT LQSNQRVQAL ELVQILEAQE SELHQXEVWL QQVGWPALEE BACU018101/1-999 RVDGLLHQLT LQSNQRVQAL ELVQMLEAQE GELHQIEVWL QQVGWPALEE 501 550 ENSP00000353646/1-1191 AGEPSLDMLL QAQGSFQELY QVAQEQVRQG EKFLQPLTGW EAAELDPPGA ENSBTAP00000028741/1-1199 PREPSLDVLL QAQGPFRELD QIAQEQVRRG EKCLQPLVGC DAAELGPFGA ENSTTRP00000000432/1-1195 PREPSLDMLL QAQGPFGDLD RIAQEQVRRG EKLLQPLVGW DAAELGPAGA bmy_05270T0/1-1198 PREPSLDMLL QAQGPFWDLD QIAQEQVRRG EKLLQPLVGW DAAELGPSGA BACU018101/1-999 PREPSLDMLL QAQGPFWDLD RIAQEQVRRG EKLLQPLVGW DAAELGPSGA 551 600 ENSP00000353646/1-1191 RFLALRAQLT EFSRALAQRC QRLADAERLF QLFREALTWA EEGQRVLAEL ENSBTAP00000028741/1-1199 RFLTLQTQLA DFSRALAQRR QRLADAERLL QFFKQALTWA EEGRQVLAEL ENSTTRP00000000432/1-1195 RFLTLQAQLT DFCRALAQRR QRLADAERLL QLFRQALMWA EEGQRVLAEL bmy_05270T0/1-1198 RFLTLQAQLT DFCRALAQRR QRLADAERLL QFFKQALTWA EEGQRVLAEL BACU018101/1-999 RFLTLQAQLT DFCRALVQRR QQLADAERLL QFFKQALTWA EEGQRVLAEL 601 650 ENSP00000353646/1-1191 EQERPGVVLQ QLQLHWTRHP DLPPAHFRKM WALATGLGSE AIRQECRWAW ENSBTAP00000028741/1-1199 EQEHPGVVLQ RLQLHWTKYP DLPPAHFRKM WALATGLGSE AIRHECRGAW ENSTTRP00000000432/1-1195 EQERPGVVLQ RLQLHWTKHP DLPPAHFRKM WALATGLGSE GIRQECRWAW bmy_05270T0/1-1198 EQERPGVVLQ RLQLHWTKHP DLPPAHFRKM WALATGLGSE GIRQECRWAW BACU018101/1-999 EQERPGVVLQ RLQLHWTKHP DLPPAHFRKM WALATGLGSE GIRQECRWAW 651 700 ENSP00000353646/1-1191 ARCQDTWLAL DQKLEASLKL PPVGSTASLC VSQVPAAPAH PPLRKAYSFD ENSBTAP00000028741/1-1199 AQCQDTWLAL DQKLEAALKS PPTGSTASLC VSRVPAVPAV PPLRKAYSLD ENSTTRP00000000432/1-1195 ARCQDTWLAL DQKSEAAVKP SLTGSTASLC VSRVLAVPPS SPLRKAYSLD bmy_05270T0/1-1198 ARCQDTWLAL DQKLEAALKP PLTGSTASLC VSRVLAVPAT PPLRKAYSLD BACU018101/1-999 ARCQDTWLAL DQKLEAALKP PLTGSTASLC VSRVLAVPAT PPLRKAYSLD 701 750 ENSP00000353646/1-1191 RNLGQSLSEP ACHCHHAATI AACRRPEAGG GALPQASPTV PPPGSSDPRS ENSBTAP00000028741/1-1199 RNLGLSLREP AHQCHHEAIV PACHRPEAGG GAQSGSCPTV PPPGSCDPRS ENSTTRP00000000432/1-1195 RNLGLSLRES AHHCHHEAIV AACHRPEAGV GAQSGSCPTM PPPGGSEPRS bmy_05270T0/1-1198 RNLGLSLRES AHHCHHEAVV AACHRPEAGV GAQSGSCPTM PPPGSSEPRS BACU018101/1-999 RNLGLSLRES AHHCHHEALV AACHRPEAGV GAQSGSCPTM PPPGSSEPRS 751 800 ENSP00000353646/1-1191 LNRLQLVLAE MVATEREYVR ALEYTMENYF PELDRPDVPQ GLRGQRAHLF ENSBTAP00000028741/1-1199 PNRLQLVLAE MVATEREYVR ALDYTMENYF PELDRPDVPQ GLRGQRAQLF ENSTTRP00000000432/1-1195 PNRLHLVLAE MVATEREYVR ALDYTMENYF PELDRPDVPQ GLRGQRAHLF bmy_05270T0/1-1198 PNRLQLVLAE MVATEREYVH ALDYTMENYF PELDRADVPQ GLRGQRAHLF BACU018101/1-999 PNRLQLVLAE MVATEREYVH ALDYTMENYF PELDRPDVPQ GLRGQRAHLF 801 850 ENSP00000353646/1-1191 GNLEKLRDFH CHFFLRELEA CTRHPPRVAY AFLRHRVQFG MYALYSKNKP ENSBTAP00000028741/1-1199 GNLEKLWDFH RHFFLRELEA CTQHPPRVAY AFLRHRVQFG MYALYSKNKP ENSTTRP00000000432/1-1195 GNLEKLRDFH RHFFLRELEA CTQHPPRVAY AFLRHRVQFG MYALYSKNKP bmy_05270T0/1-1198 GNLEKLRDFH RHFFLRELEA CTQHPPR--- -----RVQFG MYALYSKNKP BACU018101/1-999 GNLEKLRDFH RHFFLRELEA CTQHPPRVAY AFLRHRVQFG MYALYSKNKP 851 900 ENSP00000353646/1-1191 RSDALMSSYG HTFFKDKQQA LGDHLDLASY LLKPIQRMGK YALLLQELAR ENSBTAP00000028741/1-1199 RSDALMTSYG HVFFRDKQQA LGDHLDLASY LLKPIQRMSK YALLLQELAR ENSTTRP00000000432/1-1195 CSDALMTSYG HIFFRDKQQA LGDHLDLASY LLKPIQRMSK YTLLLQELVR bmy_05270T0/1-1198 CSDALMTSYG HIFFRDKQQA LGDHLDLASY LLKPIQRVSK YALLLQELAR BACU018101/1-999 CSDALMTSYG HIFFRDKQQA LGDHLDLASY LLKPIQRMSK YALLLQELAR 901 950 ENSP00000353646/1-1191 ACGGPTQELS ALREAQSLVH FQLRHGNDLL AMDAIQGCDV NLKEQGQLVR ENSBTAP00000028741/1-1199 ACGGPAQELS ALRAAQSLVH FQLRHGNDLL AMDAIQGCDV NLKEQGQLVR ENSTTRP00000000432/1-1195 ACGGTVPELS ALRAAQSLVR FQLRHGNDLL AMDAIQGCDV NLKEQGQLVR bmy_05270T0/1-1198 ACGGTVPELS ALRAAQSLVR FQLRHGNDLL AMDAIQGCDV NLKEQGQLVR BACU018101/1-999 ACGGTVPELS ALRAAQSLVR FQLRHGNDLL AMDAIQGCDV NLKEQGQLVR 951 1000 ENSP00000353646/1-1191 QDEFVVRTGR HKSVRRIFLF EELLLFSKPR HGPTGVDTFA YKRSFKMADL ENSBTAP00000028741/1-1199 QDEFTVRCGR HKSLRRIFLF EELLLFSKPR RGPTGIDMFT YKRSFKMADL ENSTTRP00000000432/1-1195 QDEFTVCFGR HKSLRRVFLF EELLLFSKPR RGPKGIDTFA YKRSFKMADL bmy_05270T0/1-1198 QDEFTVRSGR HKSLRRVFLF EELLLFSKPR RGPKGIDTFA YKRSFKMADL BACU018101/1-999 QDEFTVRSGR HKSLRRVFLF EELLLFSKPR RGPKGIDTFA YKRSFKMADL 1001 1050 ENSP00000353646/1-1191 GLTECCGNSN LRFEIWFRRR KARDTFVLQA SSLAIKQAWT ADISHLLWRQ ENSBTAP00000028741/1-1199 GLTECCGDNN LRFEIWFRRR KARDTFVLQA ASLATKQAWT ADISRLLWRQ ENSTTRP00000000432/1-1195 GLTECSGDSN LRFEVWFRRR KARDTFVLQA ASLATKQAWT ADISRLLWRQ bmy_05270T0/1-1198 GLTECCGDSN LRFEIWFRRR KARDTFVLQA ASLATKQAWT ADISRLLWRQ BACU018101/1-999 GLTECCGDSN LRFEIWFRRR KARDTFVLQA ASLATKQAWT ADISRLLWRQ 1051 1100 ENSP00000353646/1-1191 AVHNKEVRMA EMVSMGVGNK AFRDIAPSEE AINDRTVNYV LKCREVRSRA ENSBTAP00000028741/1-1199 AVHNKEVRMA EMVSMGVGNK AFRDIAPSEE AINDRTVNYI LKCQAVRSRA ENSTTRP00000000432/1-1195 AVHNKEVRMA EMVSLGVGNK AFQDIAPSKE AINDRTVNYI LKCQEVRSRA bmy_05270T0/1-1198 AVHNREVRMA EMVSLGVGNK AFQDIAPSKE AINDRTVNYI LKCQEVRSRA BACU018101/1-999 AVHNREVRMA EMVSLGVGNK AFHDIAPSKE AINDRTINYI LKCQEVRSRA 1101 1150 ENSP00000353646/1-1191 SIAVAPFDHD SLYLGASNSL PGDPASCSVL GSLNLHLYRD PALLGLRCPL ENSBTAP00000028741/1-1199 SIAVAPLDSD SPCLGASGTL PGDPASCSVL GSLNLHLHRD PALLGFRWPL ENSTTRP00000000432/1-1195 SIAVAPFDYD SPYLGASSSL SGDPASCSVL GSLNLHLYRD PAVLGFRWPL bmy_05270T0/1-1198 SIAVAPFDYD SPYLGASSSL SGDPASCSVL GSLNLHLYRD PAVLGFRWPL BACU018101/1-999 SIAVAPFDYD SPYLGASSSL SGDPASCSVL GPLNLHLHRD PAVLGFRWPL 1151 1200 ENSP00000353646/1-1191 YP-SFPEEAA LEAEAELGGQ PSLTAEDSEI SSQCPSASGS SGSDSSCVSG ENSBTAP00000028741/1-1199 YSTSFPEEAA LETDAELGSQ PSLTPEDSEV SSQCPSASGS SGSDSSCVSG ENSTTRP00000000432/1-1195 YSTGFPEEAV LETEAELGSQ PSLIPEDSEV SSQCPSASGS SGSDSSCVSG bmy_05270T0/1-1198 YSTSFPEEAV LETEAELGSQ PSLTPEDSEV SSQCPSASGS SGSDSSCVSG BACU018101/1-999 YSTSFPEEAV LETEAELGSQ PSLTPEDSEV SSQCPSASGS SGSDSSCVSG 1201 1250 ENSP00000353646/1-1191 QALGRGLEDL PCV--- ENSBTAP00000028741/1-1199 QILGKGLEDL SYV--- ENSTTRP00000000432/1-1195 QALGRGLEDL SYVR-- bmy_05270T0/1-1198 QALGRGLEDL SY---- BACU018101/1-999 QALGRGLEDL SYVSAI