KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:36:43 2014 Check: 00 .. Name: bmy_09423T0/1-467 Len: 700 Check: 5713 Weight: 1.00 Name: ENSP00000356257/1-600 Len: 700 Check: 9124 Weight: 1.00 Name: ENSBTAP00000028746/1-578 Len: 700 Check: 173 Weight: 1.00 Name: ENSTTRP00000005646/1-610 Len: 700 Check: 838 Weight: 1.00 Name: BACU009795/1-672 Len: 700 Check: 9384 Weight: 1.00 // 1 50 bmy_09423T0/1-467 ---------- ------MGTL QRAAGPCAVG TAGGLTSVWG ------VGHS ENSP00000356257/1-600 MSRVAKYRRQ VSEDPDIDSL LETLSPEEME ELEKELDVVD PDGSVPVGLR ENSBTAP00000028746/1-578 MSKVAKYRRQ VSEDPDIDSL LSTLSPEEME ELEKELDVVD PDGSVPVGLR ENSTTRP00000005646/1-610 MSKVAKYRRQ VSEDPDIDSL LSTLSPEEMA ELEKELDVVD PDGSVPVGLR BACU009795/1-672 MSKVAKYRRQ VSEDPDIDSL LSTLSPEEME ELEKELDVVD PDGSVPVGLR 51 100 bmy_09423T0/1-467 PSSPTAPRGD SICD-GTTLN PGGRGGGEGL PGQT---EGK QVETKTDSKK ENSP00000356257/1-600 QRNQTEKQST GVYNREAMLN FCEKETKKLM QREMSMDESK QVETKTDAKN ENSBTAP00000028746/1-578 QRNQTEKPST GAYNREAMLS FCEKETKKLI QREASVDEGK QVETKTDAKK ENSTTRP00000005646/1-610 QRNQTEKSST GVYNREAMLN FCEKETKKLI QREMSIDEDK QVETKRDAKK BACU009795/1-672 QRTQAEKPST GVYNREAMLN FCEKETKKLI QREIFHKEGK QVETKTDAKK 101 150 bmy_09423T0/1-467 GEERGRDASK KPLGPRRDSD LGKEPKRGGL KKSFSRDKDE AEGKGAERPK ENSP00000356257/1-600 GEERGRDASK KALGPRRDSD LGKEPKRGGL KKSFSRDRDE AGGKSGEKPK ENSBTAP00000028746/1-578 GEDKGRDAGK KPLGPRRDSD LGKEPKKGSM KKSISRDKDE ADGRSAERPK ENSTTRP00000005646/1-610 GEERGRDASK KPLGPRRDSD LGKEPKRGGL KKSFSRDKDE AESKGSERPK BACU009795/1-672 GEERGRDASK KPLGPRRDSD LGKEPKRGGL KKSFSRDKDE AEGKGAERPK 151 200 bmy_09423T0/1-467 EEKLVRGLEK GRVRAAVDKK EAGKEGRAQE GTAAPRKGEE RQGS-----V ENSP00000356257/1-600 EEKIIRGIDK GRVRAAVDKK EAGKDGRGEE RAVATKKEEE KKGSDRNTGL ENSBTAP00000028746/1-578 EEKLVRGLEK GRVRAVVDKK EAGKEG---- -PAAPRKDEE KQRN-----V ENSTTRP00000005646/1-610 EEKLIRGLEK GRVRAAVDKK EAGKEGRAQE GTAAPRKDEE KQGSARET-R BACU009795/1-672 EEKLVRGLEK GRVRAAVDKK EAGKEGRAQE GTAALRKGEE RQGS-----V 201 250 bmy_09423T0/1-467 NGDKGKKGEE KKEASQTEEA EKVQGQRKDT DTRTEG---- ---------- ENSP00000356257/1-600 SRDKDKKREE MKEVAKKEDD EKVKGERRNT DTRKEGEKMK RAGGNTDMKK ENSBTAP00000028746/1-578 SRDKGKKGEQ PEAASKTAAP EKAKGPRTGE DTRAEA---- ---------- ENSTTRP00000005646/1-610 GRREGKKVEE KKEASQREGA EKVKGQRKDT DARKEG---- ---------- BACU009795/1-672 SGDKGKKGEE KKEASQTEEA EKVQGQRKDT DARTEG---- ---------- 251 300 bmy_09423T0/1-467 --QEAERGSR DRGARPEDEK ARKEEPRRAK APREESKSPA APERSAPGAP ENSP00000356257/1-600 EDEKVKRGTG NTDTKKDDEK VKKNEPLHEK EAKDDSKTK- TPEKQTPSGP ENSBTAP00000028746/1-578 --QESKGGRR DRAARPEDEK ARKEEPHEAK APREDSKTP- VPEKPTPGAP ENSTTRP00000005646/1-610 --QEVERGSR DRGARPEDEK ARKEEPRRAE APREETKSP- APERSAPGDP BACU009795/1-672 --QKAERGSR DRGARPEDEK ARKEEPRRAK APREESKSPA APERSAPGAP 301 350 bmy_09423T0/1-467 AEPADGPAQA EEEAAPSVFD EPLERVKSND PEVTELNVNN SDCITPEILV ENSP00000356257/1-600 TKPSEGPAKV EEEAAPSIFD EPLERVKNND PEMTEVNVNN SDCITNEILV ENSBTAP00000028746/1-578 AKPADGPAKA EEEATPSIFD EPLERVKSND PEVTEVNVNN SDCITTEILV ENSTTRP00000005646/1-610 TEPAEGPAQA EEEAAPSVFD EPLERVKSND PEVTELNVNN SDCITTEILV BACU009795/1-672 AEPADGPAQA EEEAAPSVFD EPLERVKSND PEVTELNVNN SDCITPEILV 351 400 bmy_09423T0/1-467 RFAEALEFNT AVKVFALANT RADDHVAFAI AIMLKANKTI TSLNLDSNHI ENSP00000356257/1-600 RFTEALEFNT VVKLFALANT RADDHVAFAI AIMLKANKTI TSLNLDSNHI ENSBTAP00000028746/1-578 RFAEALEFNT AVKVFALANT RADDHVAFAI AIMLKANKTI TSLNLDSNHI ENSTTRP00000005646/1-610 RFAEALEFNT AVKVFALANT RADDHVAFAI AIMLKANKTI TSLNLDSNRI BACU009795/1-672 RFAEALEFNT AVKVFALANT RADDHVAFAI AIMLKANKTI TSLNLDSNHI 401 450 bmy_09423T0/1-467 TGKGILAIFR ALLQNTSLTE LRFHNQRHIC GGKTEMEMAT LLKENTTLLK ENSP00000356257/1-600 TGKGILAIFR ALLQNNTLTE LRFHNQRHIC GGKTEMEIAK LLKENTTLLK ENSBTAP00000028746/1-578 TSKGILAIFR ALLQNSSLTE LRFHNQRHIC GGKTEMEMAK LLKENTTLLK ENSTTRP00000005646/1-610 TGKGILAIFR ALLQNSSLTE LRFHNQRHIC GGKTEMEMAK LLKENTTLLK BACU009795/1-672 TGKGILAIFR ALLQNTSLTE LRFHNQRHIC GGKTEMEMAK LLKENTTLLK 451 500 bmy_09423T0/1-467 LGYHFELAGP RMTALH---- ---------- ---------- --------KC ENSP00000356257/1-600 LGYHFELAGP RMTVTNLLSR NMDKQRQKRL QEQR-----Q AQEAKGEKKD ENSBTAP00000028746/1-578 LGYHFELAGP RMTVTNLLSR NMDRQRQKRL QEQRQAQEAQ AQEAQAG-KA ENSTTRP00000005646/1-610 LGYHFELAGP RMTVTSLLSR NMDRQRQKRL QERR-----Q EREARGA-EA BACU009795/1-672 LGYHFELAGP RMTVTNLLSR NMDRQRQKRL QEQR-----Q AREASGG-AA 501 550 bmy_09423T0/1-467 LI--PGAEV- ---------- ---------- ---------- ----SGQEES ENSP00000356257/1-600 LLEVPKAGAV AK-------- ---------- ---------- ----GSPKPS ENSBTAP00000028746/1-578 LLEVPQARPP AR-------- ---------- ---------- ----GSPRPS ENSTTRP00000005646/1-610 LLEVPRAGAP AR-------- ---------- ---------- ----GSPRPS BACU009795/1-672 LLEVPRAGAP ARXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX 551 600 bmy_09423T0/1-467 FQHVTEKTAR LGPMRLASCQ SP-------- ---------- --------RI ENSP00000356257/1-600 PQPSPKPSPK NSPKKGGAPA APPPPPPPLA PPLIMENLKN SLSPATQRKM ENSBTAP00000028746/1-578 LQPPPKAAPK NSPGKGGAPA VPPPPPPPLA PPLIMENLRN SLSPATQRKM ENSTTRP00000005646/1-610 PQSSPRAAPR TSPGKGGAPA APPPPPPPLA PPLLMENLKN SLSPATQRKM BACU009795/1-672 XXXXXXXXXX XXXXXXXXPA APPPPPPPLA PPLLVENLKN SLSPATQRKM 601 650 bmy_09423T0/1-467 QKRCLPGTT- ---------- ---------- ---------- ---------- ENSP00000356257/1-600 GDKVLPAQEK NSRDQLLAAI RSSNLKQLKK V-----EVPK LLQ------- ENSBTAP00000028746/1-578 GDKALPAQEK NSRDQLLAAI RSSNLKQLKK V-----EVPK LLQ------- ENSTTRP00000005646/1-610 GDKVLPAQEK NSRDQLLAAI RSSNLKQLKK W-----RCPS CCSRTGLG-- BACU009795/1-672 GDKVLPAQEK NSRDQLLAAI RSSNLKQLKK ADDVIPSEPG VVAQRHLADT 651 700 bmy_09423T0/1-467 ---------- ---------- ---------- ---------- ---------- ENSP00000356257/1-600 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000028746/1-578 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000005646/1-610 ---AIRRHAC PGPASQGHTD PAR-HAG--- ---------- ---------- BACU009795/1-672 AAPGLLPRSV PSPEG-GQLD LVRPNCGEAW GRGRGGRERP RARVLWDQLN