KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:36:44 2014 Check: 00 .. Name: ENSTTRP00000012693/1-635 Len: 764 Check: 6603 Weight: 1.00 Name: ENSP00000378181/1-652 Len: 764 Check: 7227 Weight: 1.00 Name: ENSBTAP00000028747/1-651 Len: 764 Check: 7557 Weight: 1.00 Name: bmy_04252T0/1-753 Len: 764 Check: 2946 Weight: 1.00 Name: BACU020073/1-637 Len: 764 Check: 1671 Weight: 1.00 // 1 50 ENSTTRP00000012693/1-635 ---------- ---------- ---------- ---------- ---------- ENSP00000378181/1-652 MGKKHKKHKS DKHLYE---- ---------- ---------- ---------- ENSBTAP00000028747/1-651 MGKKHKKHKS DKHLYE---- ---------- ---------- ---------- bmy_04252T0/1-753 MGKKHKKHKS DKHLYEGEEG AAVGGGEPAV EGGEPAAARW GFRAFETTLE BACU020073/1-637 ---------- ---------- ---------- ---------- ---------- 51 100 ENSTTRP00000012693/1-635 ---------- ---------- ---------- ---------- ---------- ENSP00000378181/1-652 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000028747/1-651 ---------- ---------- ---------- ---------- ---------- bmy_04252T0/1-753 RPRRAGGRTS HGQARTREGG ATRVSRADPR RVRHSNPGPR ARAGLLLRGV BACU020073/1-637 ---------- ---------- ---------- ---------- ---------- 101 150 ENSTTRP00000012693/1-635 ---------- ---------Y VEKPLKLVLK VGGNEVTELC TGSSWHDSTL ENSP00000378181/1-652 ---------- --------EY VEKPLKLVLK VGGNEVTELS TGSSGHDSSL ENSBTAP00000028747/1-651 ---------- --------EY VEKPLKLVLK VGGNEVTELS TGSSGHDSSL bmy_04252T0/1-753 RRPGNVRGVH SASARHSTEY VEKPLKLVLK VGGNEVTELS TGSSGHDSSL BACU020073/1-637 ---------- ---------Y VEKPLKLVLK VGGNEVTELS TGSSGHDSSL 151 200 ENSTTRP00000012693/1-635 LEDKNDHDKH KDRKRKKRKK GEKQVPGEEK GRKRRRIKED KKKRDRDRVD ENSP00000378181/1-652 FEDKNDHDKH KDRKRKKRKK GEKQIPGEEK GRKRRRVKED KKKRDRDRVE ENSBTAP00000028747/1-651 FEDKNDHDKH KERKRKKRKK GEKQIPGEEK GRKRRRVKED KRKRDRDHVD bmy_04252T0/1-753 LEDKNDHDKH KDRKRKKRKK GEKQVPGEEK GRKRRRIKED KKKRDRDRVD BACU020073/1-637 LEDKNDHDKH KDRKRKKRKK GEKQVPGEEK GRKRRRIKED KKKRDRDRVD 201 250 ENSTTRP00000012693/1-635 NEAEKDLQCQ APVGLDLPPE KPLASSLAKQ EEVEQTPLQE ALNQLMRQLQ ENSP00000378181/1-652 NEAEKDLQCH APVRLDLPPE KPLTSSLAKQ EEVEQTPLQE ALNQLMRQLQ ENSBTAP00000028747/1-651 IEAEKDLQCQ APVRLDLPPE KPLASSLAKQ EEVEQTPLQE ALNQLMRQLQ bmy_04252T0/1-753 NEAEKDLQCQ APVGLDLPPE KPLASSLAKQ EEVEQTPLQE ALNQLMRQLQ BACU020073/1-637 NEAEKDLQCQ TPVGLDLPPE KPLASSLAKQ EEVEQTPLQE ALNQLMRQLQ 251 300 ENSTTRP00000012693/1-635 RKDPSAFFSF PVTDFIAPGY SMIIKHPMDF STMKEKIKNN DYQSIEELKD ENSP00000378181/1-652 RKDPSAFFSF PVTDFIAPGY SMIIKHPMDF STMKEKIKNN DYQSIEELKD ENSBTAP00000028747/1-651 RKDPSAFFSF PVTDFIAPGY SMIIKHPMDF STMKEKIKNN DYQSIEELKD bmy_04252T0/1-753 RKDPSAFFSF PVTDFIAPGY SMIIKHPMDF STMKEKIKNN DYQSIEELKD BACU020073/1-637 RKDPSAFFSF PVTDFIAPGY SMIIKHPMDF STMKEKIKNN DYQSIEELKD 301 350 ENSTTRP00000012693/1-635 NFKLMCTNAM IYNKPETIYY KAAKKLLHSG MKILSQXXXX XXXXXXXXXX ENSP00000378181/1-652 NFKLMCTNAM IYNKPETIYY KAAKKLLHSG MKILSQERIQ SLKQSIDFMA ENSBTAP00000028747/1-651 NFKLMCTNAM IYNKPETIYY KAAKKLLHSG MKILSQERIQ SLKQSIDFMA bmy_04252T0/1-753 NFKLMCTNAM IYNKPETIYY KAAKKLLHSG MKILSQERIQ SLKQSIDFMA BACU020073/1-637 NFKLMCTNAM IYNKPETIYY KAAKKLLHSG MKILSQERIQ SLKQSIDFMA 351 400 ENSTTRP00000012693/1-635 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXKD ENSP00000378181/1-652 DLQKTRKQKD GTDTSQSGED GGCWQRERED SGDAEAHAFK SPSKENKKKD ENSBTAP00000028747/1-651 DLQKSRKQRD RTDTSQSGED SGSWPRERDD AGDAEAQGFK SPNKENKKKD bmy_04252T0/1-753 DLQKSRKQKD RTDTSQSGED SGCWPRERED SGDTEAQGFK SPNKENKKKD BACU020073/1-637 DLQKSRKQKD RTDTSQSGED SGCWPRERED SGDTEAQGFK SPNKENKKKD 401 450 ENSTTRP00000012693/1-635 KDVLEDKFKS NNVEREQEQI DRIVKESGGK LTRRLVNSQC EFERRKPDGT ENSP00000378181/1-652 KDMLEDKFKS NNLEREQEQL DRIVKESGGK LTRRLVNSQC EFERRKPDGT ENSBTAP00000028747/1-651 KDVLEDKFKS NNLEREQEQI DRIVKESGGK LTRRLVNSQC EFERRKPDGT bmy_04252T0/1-753 KDVLEDKFKS NNLEREQEQI DRIVKESGGK LTRRLVNSQC EFERRKPDGT BACU020073/1-637 KDVLEDKFKS NNLEREQEQI DRIVKESGGK LTRRLVNSQC EFERRKPDGT 451 500 ENSTTRP00000012693/1-635 TTLGLLHPVD PVVGEPGYCP VRLGMTTGRL QSGVNTLQGF KEDKRNKVTP ENSP00000378181/1-652 TTLGLLHPVD PIVGEPGYCP VRLGMTTGRL QSGVNTLQGF KEDKRNKVTP ENSBTAP00000028747/1-651 TTLGLLHPVD PVVGEPGYCP VRLGMTTGRL QSGVNTLQGF KEDKRNKVTP bmy_04252T0/1-753 TTLGLLHPVD PVVGEPGYCP VRLGMTTGRL QSGVNTLQGF KEDKRNKVTP BACU020073/1-637 TTLGLLHPVD PVVGEPGYCP VRLGMTAGRL QSGVNTLQGF KEDKRNKVTP 501 550 ENSTTRP00000012693/1-635 VLYLNYGPYS SYAPHYDSTF ANISKDDSDL IYSTYGEDSD LPSDF--XXX ENSP00000378181/1-652 VLYLNYGPYS SYAPHYDSTF ANISKDDSDL IYSTYGEDSD LPSDF--SIH ENSBTAP00000028747/1-651 VLYLSYGPYS SYAPHYDSTF ANISKDDSDL IYSTYGEDPD LPSDF--SIH bmy_04252T0/1-753 VLYLNYGPYS SYAPHYDSTF ANISKDDSDL IYSTYGEDSD LPSDF--SIH BACU020073/1-637 VLYLNYGPYS SYAPHYDSTF ANISKDDSDL IYSTYGEDSD LPSDFSNSIS 551 600 ENSTTRP00000012693/1-635 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX --------XX XXXSSPEDEG ENSP00000378181/1-652 EFLATCQDYP YVMADSLLDV LTKGGHSRTL --------QE MEMSLPEDEG ENSBTAP00000028747/1-651 EFLATCQDYP YVMADSLLDV LTKGGHSRTL --------QE SETSSPEDEG bmy_04252T0/1-753 EFLATCQDYP YVMADSLLDV LTKGGHSRTL --------QE AEMSFPEDEG BACU020073/1-637 DILS------ --LLDLQMEL SKECGPNWSL FIYLLIKCFS LSLQSSEDEG 601 650 ENSTTRP00000012693/1-635 QTRMLDTAKE MEQITEIEPT GHLDSNNQDR LTALKAVANF GAPVEVFDSE ENSP00000378181/1-652 HTRTLDTAKE MEQITEVEPP GRLDSSTQDR LIALKAVTNF GVPVEVFDSE ENSBTAP00000028747/1-651 QTRILDTAKE ME-VTEVELT GCLDSNNQDK LTALKAVTNF GAPVEVFDSE bmy_04252T0/1-753 QTRTLDTAKE ME-ITEIEPT GHLDSNNQDR LTALKAVTSF GAPVEVFDSE BACU020073/1-637 QTRTLDTAKE MEQITEIEPT GHLDSNNQDR LTALKAVTNF GAPVEVFDSE 651 700 ENSTTRP00000012693/1-635 EAEVFQRKLD ETTKLLRELQ EAQNERLSTR PPPNMICLLG PSYREMHLAE ENSP00000378181/1-652 EAEIFQKKLD ETTRLLRELQ EAQNERLSTR PPPNMICLLG PSYREMHLAE ENSBTAP00000028747/1-651 EAEVFQRKLD ETTKLLRELQ EAQNERLSTR PPPNMICLLG PSYREMHLAE bmy_04252T0/1-753 EAEVFQRKLD ETTKLLRELQ EAQNERLSTR PPPNMICLLG PSYREMHLAE BACU020073/1-637 EAEVFQRKLD ETTKLLRELQ EAQNERLSTR PPPNMICLLG PSYREMHLAE 701 750 ENSTTRP00000012693/1-635 QVTNNLKELA QQVTPGDIVS MYGVRKAMGI SIPSPVVENT FVDLTEDFEE ENSP00000378181/1-652 QVTNNLKELA QQVTPGDIVS TYGVRKAMGI SIPSPVMENN FVDLTEDTEE ENSBTAP00000028747/1-651 QVTNNLKELA QQVTPGDVVS TYGVRKAMGI SVPSPVIANN LVDLTADFEE bmy_04252T0/1-753 QVTNNLKELA QQVTPGDIVS MYGVRKAMGI SIPSPVVENN FVDLTEDFEE BACU020073/1-637 QVTNNLKELA QQVAPGDIVS IYGVRKAMGI SIPSPVVENN FVDLTEDFEE 751 800 ENSTTRP00000012693/1-635 PKKTDVTECG PDGI ENSP00000378181/1-652 PKKTDVAECG PGGS ENSBTAP00000028747/1-651 PRKTDVTECE PDGI bmy_04252T0/1-753 PKKTDVTECG PDGI BACU020073/1-637 PKKTDVTECG PDGI