KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:36:45 2014 Check: 00 .. Name: ENSP00000337159/1-1539 Len: 1559 Check: 38 Weight: 1.00 Name: ENSBTAP00000028751/1-1546 Len: 1559 Check: 9676 Weight: 1.00 Name: ENSTTRP00000008289/1-1545 Len: 1559 Check: 5461 Weight: 1.00 Name: bmy_17767T0/1-1356 Len: 1559 Check: 4864 Weight: 1.00 Name: BACU018237/1-1555 Len: 1559 Check: 7710 Weight: 1.00 // 1 50 ENSP00000337159/1-1539 MDSYFKAAVS DLDKLLDDFE QNPDEQDYLQ DVQNAYDSNH CSVSSELASS ENSBTAP00000028751/1-1546 MDSYFKAAVS DLDRLLDDFE QNPDEQDYLQ DAQKAYDSKH YSVSSELTAS ENSTTRP00000008289/1-1545 MDSYFKAAVS DLDKLLDDFE QNPDEQDYLQ DAQNSYDSNH YSVSSELASS bmy_17767T0/1-1356 MDSYFKAAVS DLDKLLDDFE QNPDEQDYLQ DAQNSYDSNH YSVSSELASS BACU018237/1-1555 MDSYFKAAVS DLDKLLDDFE QNPDEQDYLQ DAQNSYDSNH YSVSSELASS 51 100 ENSP00000337159/1-1539 QRTSLLPKDQ ECVNSCASSE TSYGTNESSL NEKTLKGLTS IQNEKNVTGL ENSBTAP00000028751/1-1546 QVTSLLPKDQ QCINCCVSSE TGYETNQIAL SEKGLGGLTS LQNEKNVTGL ENSTTRP00000008289/1-1545 QLTSLLPKDQ QCINCCASSE TGYETNQIAL NEKTLEGQTS IQNEKNVTGL bmy_17767T0/1-1356 QLTSLLPKDQ QCINCFASSE TGYETNQIAL NEKTLEGLTS IQNEKNVTGL BACU018237/1-1555 QLTSLLPKDQ QCINCCASSE TGYETNQIAL NEKTLEGLTS IQNEKNVTGL 101 150 ENSP00000337159/1-1539 DLLSSVDGGT SDEIQPLYMG RCSKPICDLI SDMGNLVHAT NSEEDIKKLL ENSBTAP00000028751/1-1546 DLLSSVDGGT SDEIQPLYMG RCSKPVCDLI SDMGNLVHVA NSEEDIKKLL ENSTTRP00000008289/1-1545 DLLSSVDGGT SDEIQPLYMG RCSKPVCDLI SDMGNLVHVT NSEEDIKKLL bmy_17767T0/1-1356 DLLSSVDGGT SDEIQPLYMG RCSKPVCDLI SDMGNLVHVT NSEEDIKKLL BACU018237/1-1555 DLLSSVDGGT SDEIQPLYVG RCSKPVCDLI SDMGNLVHVT NSEEDIKKLL 151 200 ENSP00000337159/1-1539 PDDFKSNADS LIGLDLSSVS DTPCVSSTDH DSDTVREQQN DISSELQNRE ENSBTAP00000028751/1-1546 PDDLKSSADS LTGLDLSSVS ETFCVSSADH GNNAVREEQN DVSLELQNRG ENSTTRP00000008289/1-1545 PDDFKSSADS LTGLDLSSVS ETFCISSTDH GNNTVREEQN DVSSELQNRE bmy_17767T0/1-1356 PDDFKSSADS LIGLDLSSVS ETFCVSSTDH GNNTVREEQN DVSSELQNRE BACU018237/1-1555 PDDFKSSADS LIGLDLSSVS ETFCVSSTDH GNNTVREEQN DVSSELQNRE 201 250 ENSP00000337159/1-1539 IGGIKELGIK VDTTLSDSYN YSGTENLKDK KIFNQLESIV DFNMSSALTR ENSBTAP00000028751/1-1546 ISGTTEFGVK VDRALSDSCN YNEKENLEDK KISNQSEPVA DFNMPSALTQ ENSTTRP00000008289/1-1545 ISGTKEFGIK VDTTLSDSCN YSGKENLEDK KISNQLEPVV DFNMPSALTQ bmy_17767T0/1-1356 ISGTKEFGIK VDTTLSDSCN YSGKENLEDK KISNQLETVV DFNMPSALTQ BACU018237/1-1555 ISGTKEFGIK VDTTLSDSCN YSGKENLEDK KISNQLETVV DFNVPSALTQ 251 300 ENSP00000337159/1-1539 QSSKMFHAKD KLQHKSQPCG LLKDVG-LVK EEVDVAVITA AECLKEEGKT ENSBTAP00000028751/1-1546 QSSKAFDAKD HPQHKNQPCE LVKAVGCLVK EEEEVPVKAA TECLKEGGST ENSTTRP00000008289/1-1545 QSSKMFDAKD HLQDKHQPCE LVKADGCLVK EEVDVPVIAA PECLKEGGST bmy_17767T0/1-1356 QSSKMFDAKD HLQYKNQPCE LVKADGCLVK EEVDVPVIAA PECLKEGGST BACU018237/1-1555 QSSKMFDAKD HLQYKNQPCE LVKADGCLVK EEVDVPVIAA PECLKEGGST 301 350 ENSP00000337159/1-1539 SALTCSLPKN EDLCLNDSNS RDENFKLPDF SFQEDKTV-- IKQSAQEDSK ENSBTAP00000028751/1-1546 SALSCSLPKD GGLCLNDPNL RDENSKLPDF SFEEDRTAVF IKESAKEDSR ENSTTRP00000008289/1-1545 SALSCSLPKN GGLCLNDSNL RDENFKLPDF SFQEDRTAIF IKQSAKEDSR bmy_17767T0/1-1356 SALSCSLPKN GGLCLNDSNL RDENFKLPDF SFQEGRTAIF IRQSAKEDSR BACU018237/1-1555 SALSSSLPKN GGLCLNDSNL RDENFKLPDF SFQEGRTAIF IKQSAKEDSR 351 400 ENSP00000337159/1-1539 SLDLKDN-DV IQDSSSALHV SSKDVPSSLS CLPASGSMCG SLIESKARGD ENSBTAP00000028751/1-1546 NVDLNDNKDV IQDSASALHV SSENTYSSLS CLPVPGSLCG SLIDSKGHGG ENSTTRP00000008289/1-1545 NLDLKDNKDE IQDSASTLHV SSENTYSSLS CLPVPGALCG SLIENKAHGD bmy_17767T0/1-1356 NLDLKDNKDE IQDSASTLHV SSENTYSSLS CLPVPGSLCG SFIENKAHGD BACU018237/1-1555 NLDLKDNKDE IQDSASTLHV SSENTYSSLS CLPVPGSLCG SFIENKAHGD 401 450 ENSP00000337159/1-1539 FLPQHEHKDN IQDAVTIHEE IQNSVVLGGE PFKENDLLKQ EKCKSILLQS ENSBTAP00000028751/1-1546 FLPQNENKDN VQDAVTVHEE IQKKVTSGGE SFKETDLLKQ DKCKNILHQP ENSTTRP00000008289/1-1545 CLPQNEYKDN IKDAVTVHEE IQKNMTSGGE PLKENDLLKR EKCK-IPHQP bmy_17767T0/1-1356 CLPQNEYKDN IKDAVTVHEE IQKNMSSGGE PLKETDLLRQ EKCKNIPHQP BACU018237/1-1555 CLPQNEYKDN IKDAVTVHEE IQKNMTSGGE TLKETDLLKQ EKCKNIPHQP 451 500 ENSP00000337159/1-1539 LIEGMEDRKI DPDQTVIRAE SLD--GGDTS STVVESQEGL SGTHVPESSD ENSBTAP00000028751/1-1546 LTEKMGDRKV DSNQMVIRVE SMDYVDNSSS YTAAESQIEL SGASAPESPD ENSTTRP00000008289/1-1545 LIEKMGDREA DSNQMVVRVE SLDYPDNTSS STAAESQIEL SGANAPESPD bmy_17767T0/1-1356 LIEKMGDRKV DSNQMVVRVE SLDYPDNTSS SAAAESQIEL SGANAPESPD BACU018237/1-1555 LTEKMGDRKV DSNQMVVRVE SLDYPDNTSS STAAESQIEL SGANAPESPD 501 550 ENSP00000337159/1-1539 CCEGFINTFS SNDMDGQDLD YFNIDEGAKS GPLISDAELD AFLTEQYLQT ENSBTAP00000028751/1-1546 HCEGL--TFS SNDIDGQDLD YFNIDEGMKS GAPISDAELD AFLTEQYLQT ENSTTRP00000008289/1-1545 CCEGF--TFS SNDISGQDLD YFNIDEGMKS GAPVSDAELD AFLTEQYLQP bmy_17767T0/1-1356 CCEDF--TFS SNDINGQDLD YFNIDEGMKS GAPISDAELD AFLTEQYLQP BACU018237/1-1555 CCEGF--TFS NNGINGQDLD YFNIDEGMKS GAPISDAELD AFLTEQYLQP 551 600 ENSP00000337159/1-1539 TNIKSFEENV NDSKSQMNQI DMKGLDDGNI NNIYFNAEAG AIGESHGINI ENSBTAP00000028751/1-1546 SNIKSFEENI NDAKPQMNQI DMKGLDDGNI DNIYFDAEAG ATRESPGINM ENSTTRP00000008289/1-1545 SNIKPFEENV NDSKSQMNQI DRKGPDDGNV DNIYFNAEAG ATGESPGINM bmy_17767T0/1-1356 SNIKSFEENV NDSKSQMNQI DMKGLDDGNV DNIYFNAEAG ATGESPGINV BACU018237/1-1555 SNIKSFEENV SDSKSQMNQI DMKGLDDGNV DNIYFNAEAG ATGESPGINM 601 650 ENSP00000337159/1-1539 ICEIVDKQNT IENG-LSLGE KSTIPVQQGL PTSKSEITNQ LSVSDINSQS ENSBTAP00000028751/1-1546 ICETIDKQNT AENGSLSLSE KSTVTVEQGL SSSKSEITNE LSTSDSNSQS ENSTTRP00000008289/1-1545 ICETVDKQNT TENGSLSLGE KSAIPVEQVL SSSKSEITNE LSVSDSNSQS bmy_17767T0/1-1356 ICETVDKQYT TENGSLSLGE KSTIPVEQVL SSSKSEITNE LSVSDSNSQS BACU018237/1-1555 ICETVDKQNT AENGSLSLGE KSTIPVEQVL SSSKSEITNE LSVSDSNSQS 651 700 ENSP00000337159/1-1539 --VGGARPKQ LFSLPSRTRS SKDLNKPDVP DTIESEPSTA DTVVPITCAI ENSBTAP00000028751/1-1546 VHVGGARPKQ LFSVPSRTRS SKEPNKLDVP NMPESKPRTA NTIVATTCTT ENSTTRP00000008289/1-1545 VHVGGARPKQ LFSVPSRTRS SKEPNKLDVP NMPESEPRIA NTIVPTTCAT bmy_17767T0/1-1356 VHVGGARPKQ LFSVPSRTRS SKEPNKLDVP NMPESEPRVA NTIVPTTCAI BACU018237/1-1555 VHVGGARPKQ LFSVPSRTRS SKEPNKLDVP NMPESEPRVA NTIVPTTCAI 701 750 ENSP00000337159/1-1539 DSTADPQVSF NSNYIDIESN SEGGSSFVTA NEDSVPENTC KEGLVLGQKQ ENSBTAP00000028751/1-1546 DSVTDPQVSF DSNYIDIESN FEGGSSFVTA NEESLPTNTC KDGLVLGQKQ ENSTTRP00000008289/1-1545 DSVTDPQVSF NSNYIDIESN FEGGSSFVTA NEESLPANTC KEGLVLGQKQ bmy_17767T0/1-1356 DSVTDPQVSF NSNYIDIESN FEGGSSFVTA NEESLPANTC KEGLVLGRKQ BACU018237/1-1555 DSVTDPQVSF NSNYIDIESN FEGGSSFVTA NEESLPANTC KEGLVLGQKQ 751 800 ENSP00000337159/1-1539 PTWVPDSEAP NCMNCQVKFT FTKRRHHCRA CGKVFCGVCC NRKCKLQYLE ENSBTAP00000028751/1-1546 PTWVPDSEAP NCMNCQVKFT FTKRRHHCRA CGKVFCGVCC NRKCKLQYLE ENSTTRP00000008289/1-1545 PTWVPDSEAP NCMNCQVKFT FTKRRHHCRA CGKVFCGVCC NRKCKLQYLE bmy_17767T0/1-1356 PTWVPDSEAP NCMNCQIKFT FTKRRHHCRA CGKVFCGVCC NRKCKLQYLE BACU018237/1-1555 PTWVPDSEAP NCMNCQVKFT FTKRRHHCRA CGKVFCGVCC NRKCKLQYLE 801 850 ENSP00000337159/1-1539 KEARVCVVCY ETISKAQAFE RMMSPTGSNL KSNHSDECTT VQPPQENQTS ENSBTAP00000028751/1-1546 KEARVCVVCY ETISKAQAFE RMMSPTGSNL KSNHSDECAT VQPLQETQTS ENSTTRP00000008289/1-1545 KEARVCVVCY ETISKAQAFE RMMSPTGSNL KSNHSDDCAT IQPLQETQTS bmy_17767T0/1-1356 KEARVCVVCY ETISKAQAFE RMMSPTGSNL KSNHSDECAN IQPLQETQTS BACU018237/1-1555 KEARVCVVCY ETISKAQAFE RMMSPTGSNL KSNHSDECTN IQPLQETQTS 851 900 ENSP00000337159/1-1539 SIPSPATLPV SALKQPGVEG LCSKEQKRVW FADGILPNGE VADTTKLSSG ENSBTAP00000028751/1-1546 SIPSPTTLPI SALKQPSVEG LCSKEQKRVW FADGILPNGE VADTTKLSSG ENSTTRP00000008289/1-1545 SISSPTTLPI SALKQPSVEG LCSKEQKRVW FADGILPNGE VADTTKLSSG bmy_17767T0/1-1356 SISSPTTLRI SALKQPSVEG LCSKEQKRVW FADGILPNGE VADTTKLSSG BACU018237/1-1555 SISSPTTLPI SALKQPSVEG LCSKEQKRVW FADGILPNGE VADTTKLSSG 901 950 ENSP00000337159/1-1539 SKRCSEDFSP LSPDVPMTVN TVDHSHSTTV EKPNNETGDI TRNEIIQSPI ENSBTAP00000028751/1-1546 SKRCSEDFSP LLPDMPLMVN TVDHAHSTPV EKPNSETEDT -RNEIIQSPT ENSTTRP00000008289/1-1545 SKRCSEDFSP LLPDVPLMIN TVDHAHSTTV EKPNSEAGDI -RNEIIRSPI bmy_17767T0/1-1356 SKRCSEDFSP LLPDVPLMIS TVDHAHSTTV ENPNSETGDI -RNEIIRSPI BACU018237/1-1555 SKRCSEDFSP LLPDVPLMIS TVDHAHSTTV EKPNSETGDI -RNEIIRSPI 951 1000 ENSP00000337159/1-1539 SQVPSVEKLS MNTGNEGLPT ---------S GSFTLDDDVF AETEEPSSPT ENSBTAP00000028751/1-1546 SQVPPVEKLP TNTGTEGLPT ---------S ASFTLDDDVF AETEEPSGPT ENSTTRP00000008289/1-1545 SQVPSVEKLP TNTGTEGLPT ---------S GSFTLDDDVF AEIEDLSSPT bmy_17767T0/1-1356 SQVPSVEKLP TNTGTEGLPT NTGTEGLPTS GSFTLDDDVF AEIEGLSSPT BACU018237/1-1555 SQVPSVEKLP TNTGTEGLPT NTGTEGLPAS GSFTLDDDVF AEIEGLSSPT 1001 1050 ENSP00000337159/1-1539 GVLVNSNLPI ASISDYRLLC DINKYVCNKI SLLPNDEDSL PPLLVASGEK ENSBTAP00000028751/1-1546 DVLVNSSLPV ASTSDYRLLC SID-NVCNKM SLLPDDEDSL PPLLVTSGEK ENSTTRP00000008289/1-1545 GVLVNSNLPV ASISDYRLLC GIDKNVCNKI SLLPDDEDSL PPLLVASGEK bmy_17767T0/1-1356 GVLVNSHLPV ASISDYRLLC GIDKNVCNKI SLLPDDEDSL PPLLVASGEK BACU018237/1-1555 GVLVNSHLPV ASISDYRLLC GIDKNVCNKI SLLPDDEDSL PPLLVASGEK 1051 1100 ENSP00000337159/1-1539 GSVPVVEEHP SHEQIILLLE GESFHPVTFV LNANLLVNVK FIFYSSDKYW ENSBTAP00000028751/1-1546 GSVPVVEKHP SHEQIILLLE GEGSCPVTFV LNANLLVNVK LAFYSSDKYW ENSTTRP00000008289/1-1545 GSVPVIEEHP SHEQIILLLE GEGFCPVTFV LNANLLVNVK LAFYSSDKYW bmy_17767T0/1-1356 GSVPVIEEHP SHEQIILLLE GEGFCPVTFV LNANLLVNVK LAFYSSDKYW BACU018237/1-1555 GSVPVIEEHP SHEQIILLLE GEGFCPVTFV LNANLLVNVK LAFYSSDKYW 1101 1150 ENSP00000337159/1-1539 YFSTNGLHGL GQAEIIILLL CLPNEDTIPK DIFRLFITIY KDALKGKYIE ENSBTAP00000028751/1-1546 YFSTNGLHGL GQAEIIILLL CLPNEDTIPK DIFRLFITIY KDALKGKYIE ENSTTRP00000008289/1-1545 YFSTNGLHGL GQAEIIILLL CLPSEDTIPK DIFRLFITIY KDALKGKYIE bmy_17767T0/1-1356 YFSTNGLHGL GQAEIIILLL CLPSEDTIPK DIFRLFITIY KDALKGKYIE BACU018237/1-1555 YFSTNGLHGL GQAEIIILLL CLPSEDTIPK DIFRLFITIY KDALKGKYVE 1151 1200 ENSP00000337159/1-1539 NLDNITFTES FLSSKDHGGF LFITPTFQKL DDLSLPSNPF LCGILIQKLE ENSBTAP00000028751/1-1546 NLDSITFTES FLSSKDHGGF LFITPTFQKL DDLLLPSNPF LCGILIQKLE ENSTTRP00000008289/1-1545 NLDSITFTES FLSSKDHGGF LFITPTFQKL DDLLLPSNPF LCGILIQKLE bmy_17767T0/1-1356 NLDSITFTES FLSSKDHGGF LFITPTFQKL DDLLLPSNPF LCGILIQKLE BACU018237/1-1555 NLDSITFTES FLSSKDHGGF LFITPTFQKL DDLLLPSNPF LCGILIQKLE 1201 1250 ENSP00000337159/1-1539 IPWAKVFPMR LMLRLGAEYK AYPAPLTSIR GRKPLFGEIG HTIMNLLVDL ENSBTAP00000028751/1-1546 IPWAKVFPMR LMLRLGAEYK AYPAPLTSIR GRKPLFGDIG HTIMNLLVDL ENSTTRP00000008289/1-1545 IPWAKVFPMR LMLRLGAEYK AYPAPLTSIR GRKPLFGEIG HTIMNLLVDL bmy_17767T0/1-1356 IPWAKVFPMR LMLRLGAEYK AYPAPLTSIR GRKPLFGEIG HTIMNLLVDL BACU018237/1-1555 IPWAKVFPMR LMLRLGAEYK AYPAPLTSIR GRKPLFGEIG HTIMNLLVDL 1251 1300 ENSP00000337159/1-1539 RNYQYTLHNI DQLLIHMEMG KSCIKIPRKK YSDVMKVLNS SNEHVISIGA ENSBTAP00000028751/1-1546 RNYQYTLHNI DQLLIHMEMG KSCIKIPRKK YSDVMKVINS SNEHVISIGA ENSTTRP00000008289/1-1545 RNYQYTLHNI DQLLIHMEMG KSCIKIPRKK YNDVMKVINS SNEHVISIGA bmy_17767T0/1-1356 RNYQYTLHNI DQLLIHMEMG KSCIKIPRKK YNDVMKVINS SNEHVISIGA BACU018237/1-1555 RNYQYTLHNI DQLLIHMEMG KSCIKIPRKK YNDVMKVINS SNEHVISIGA 1301 1350 ENSP00000337159/1-1539 SFSTEADSHL VCIQNDGIYE TQANSATGHP RKVTGASFVV FNGALKTSSG ENSBTAP00000028751/1-1546 SFSTEADSHL VCIQNDGVYQ TQANSATGHP RKVTGASFVV FNGALKASSG ENSTTRP00000008289/1-1545 SFSTEADSHL VCIQNDGVYQ TQANSATGHP RKVTGASFVV FNGALKASSG bmy_17767T0/1-1356 SFSTEADSHL VCIQNDGVYQ TQANSATGHP RKVTGASFVV FNGALKASSG BACU018237/1-1555 SFSTEADSHL VCIQNDGVYQ TQANSATGHP RKVTGASFVV FNGALKASSG 1351 1400 ENSP00000337159/1-1539 FLAKSSIVED GLMVQITPET MNGLRLALRE QKDFKITCGK VDAVDLREYV ENSBTAP00000028751/1-1546 FLAKSSIVED GLMVQITPET MDGLRLALRE QKDFKITCGK VDAVDMREYV ENSTTRP00000008289/1-1545 FLAKSSIVED GLMVQITPET MDGLRLALRE QKDFKITCGK VDAVDMREYV bmy_17767T0/1-1356 FLAKSSIVE- ---------- ---------- ---------- ---------- BACU018237/1-1555 FLAKSSIVED GLMVQITPET MDGLRLALRE QKDFKITCGK VDAVDMREYV 1401 1450 ENSP00000337159/1-1539 DICWVDAEEK GNKGVISSVD GISLQGFPSE KIKLEADFET DEKIVKCTEV ENSBTAP00000028751/1-1546 DICWVDSEEK GNKGVISSVD GMSLQGFPSE KIKLEADFET DEKIVKCTEV ENSTTRP00000008289/1-1545 DICWVDSEEK GNKGVISSVD GISLQGFPSE KIKLEADFET EEKIVKCTEV bmy_17767T0/1-1356 ---------- ---------- ---------- ---------- ---------- BACU018237/1-1555 DICWVDSEEK GNKGVISSVD GISLQGFPSE KIKLEADFET DEKIVKCTEV 1451 1500 ENSP00000337159/1-1539 FYFLKDQDLS ILSTSYQFAK EIAMACSAAL CPHLKTLKSN GMNKIGLRVS ENSBTAP00000028751/1-1546 FYFLKDQDLS ISATRYQFAK EIAMACSAAL CPHLKILKSS GMNKIGLRVS ENSTTRP00000008289/1-1545 FYFLKDQDLS ISATRYQFAK EIAMACSAAL CPHLKTLKSN GINKIGLRVS bmy_17767T0/1-1356 ---------- ---------- ---------- ---------- ---------- BACU018237/1-1555 FYFLKDQDLS ISANCYQFAK EIAMACSAAL CPHLKTLKSN GINKIGLRVS 1501 1550 ENSP00000337159/1-1539 IDTDMVEFQA GSEGQLLPQH YLNDLDSALI PVIHGGTSNS -SLPLEIELV ENSBTAP00000028751/1-1546 IDTDMVEFQA GSEGRLLPQH YLNDLDSALI PVIHGGTSNS TSLPLEIELV ENSTTRP00000008289/1-1545 IDTDMVEFQA GSEGQLLPQH YLNDLDSALI PVIHGGTSNS TSLPLEIELV bmy_17767T0/1-1356 ---------- ---------- ---------- ---------- ---------- BACU018237/1-1555 IDTDMVEFQA GSEGQLLPQH YLNDLDSALI PVIHGGTSNS TSLPLEIELV 1551 1600 ENSP00000337159/1-1539 FFIIEHLF- ENSBTAP00000028751/1-1546 FFIIENLFE ENSTTRP00000008289/1-1545 FFIIENLF- bmy_17767T0/1-1356 --------- BACU018237/1-1555 FFIIENLF-