KEY:
    ENSP* - Homo sapiens (Human)
    ENSBTA* - Bos taurus (Cow)
    ENSTTR* - Tursiops truncatus (Dolphin)
    bmy_* - Balaena mysticetus (Bowhead whale)
    BACU* - Balaenoptera acutorostrata (Minke whale)

Copy from below the line for a valid .msf file.

----------------------------------------------------------------------------------
                
NoName   MSF: 5  Type: P  Thu May 15 17:36:48 2014  Check: 00 ..

 Name: BACU014148/1-203          Len:    218  Check:  6916  Weight:  1.00
 Name: ENSTTRP00000004948/1-194  Len:    218  Check:  846  Weight:  1.00
 Name: ENSP00000319476/1-199     Len:    218  Check:  629  Weight:  1.00
 Name: bmy_02958T0/1-185         Len:    218  Check:  8627  Weight:  1.00
 Name: ENSBTAP00000028775/1-209  Len:    218  Check:  7794  Weight:  1.00

//


                          1                                                   50
BACU014148/1-203          ---------- MSETCTDCIR ELMGIGNGDG YGRESEEHIK DSKCPSSVHD 
ENSTTRP00000004948/1-194  MKSDLWYFFL FCFQVEVLTG EFNASATSEM FIFHNGGVQI LCKYPDTVQQ 
ENSP00000319476/1-199     MKSGLWYFFL FCLRIKVLTG EINGSANYEM FIFHNGGVQI LCKYPDIVQQ 
bmy_02958T0/1-185         ---------- ---------- ---------M FIFHNGGVQI LCKYPDTVQQ 
ENSBTAP00000028775/1-209  MKSDLRYFFL FCIQVEILAG EFNDSAASEM FIFHNGGVQI LCKYPDTVRQ 


                          51                                                 100
BACU014148/1-203          PNSEYM---- FMAAVNTAKK PGPTGTVTRG GLGREERFXX XXXXXXXXXX 
ENSTTRP00000004948/1-194  FKMQLLKGNN ILCDLTKTKG SGD-VSITNL NLCQFQLSS- --SVLLYNLN 
ENSP00000319476/1-199     FKMQLLKGGQ ILCDLTKTKG SGNTVSIKSL KFCHSQLSNN SVSFFLYNLD 
bmy_02958T0/1-185         FKMQLLKGNN ILCDLIKTKG SGDTVSITNL NVCQFQLSNN SVSFFLYNLD 
ENSBTAP00000028775/1-209  FKMQLLKGDN VLCDLTKTKE NEDTVSIRNL NVCKFQLSNN SVSFFLYNLD 


                          101                                                150
BACU014148/1-203          XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX 
ENSTTRP00000004948/1-194  SSHASXXXXX XXXXXXXXXX XX-XXXXXXX XXXSQVCCQL KFWLPIGCAA 
ENSP00000319476/1-199     HSHANYYFCN LSIFDPPPFK VT-LTGGYLH IYESQLCCQL KFWLPIGCAA 
bmy_02958T0/1-185         SSHASYYICK LSIFDPPPFQ VDILSKEYLN IYESQLCCQL KFWLPIGCAA 
ENSBTAP00000028775/1-209  SSYASYYICK LSIFDPPPFQ VDILSREYLN IYESELCCQL KFWLPIGCAA 


                          151                                                200
BACU014148/1-203          XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XKSVFYMKPR 
ENSTTRP00000004948/1-194  FVVVCIFGCV LTCWLTKKKY PSSMHDPNSE YMFMAAVNTA KKP----GPT 
ENSP00000319476/1-199     FVVVCILGCI LICWLTKKKY SSSVHDPNGE YMFMRAVNTA KKS----RLT 
bmy_02958T0/1-185         FVVACIFGCV LTCWLTKKKC PSSVHDPNSE YMFMAAVNTA KKP----GPT 
ENSBTAP00000028775/1-209  FVTVCVFGCV LMYWLTKKKY PTSVHDPNSE YMFMAAVNTA KKP----APT 


                          201                                                250
BACU014148/1-203          -ILIFYFKGR ENVSKTEF 
ENSTTRP00000004948/1-194  -DVT------ -------- 
ENSP00000319476/1-199     -DVTL----- -------- 
bmy_02958T0/1-185         GTVTRGGLGR EERSLHEA 
ENSBTAP00000028775/1-209  -DVTR----N LELPGTQA