KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:36:49 2014 Check: 00 .. Name: ENSTTRP00000002952/1-561 Len: 639 Check: 2996 Weight: 1.00 Name: ENSP00000357812/1-561 Len: 639 Check: 5154 Weight: 1.00 Name: ENSBTAP00000028777/1-566 Len: 639 Check: 4637 Weight: 1.00 Name: bmy_18546T0/1-628 Len: 639 Check: 5717 Weight: 1.00 Name: BACU007262/1-561 Len: 639 Check: 3777 Weight: 1.00 // 1 50 ENSTTRP00000002952/1-561 MSTERTSWTS LSTIQKIALG LGIPASAVVA YILYRRYRES RXXXXXXXXX ENSP00000357812/1-561 MSTERTSWTS LSTIQKIALG LGIPASATVA YILYRRYRES REERLTFVGE ENSBTAP00000028777/1-566 MSTERTSWTS LSTIQKIALG LGIPASATVA YILYRRYRES REERLTFVGE bmy_18546T0/1-628 MSTERTSWTS LSTIQKIALG LGIPASAVVA YILYRRYRES REERLTFVGE BACU007262/1-561 MSTERTSWTS LSTIQKIALG LGIPASAVVA YILYRRYRES REERLTFVGE 51 100 ENSTTRP00000002952/1-561 XXXXXXXXXX XXXXXXXXXX XXXXXXXLRK QTGARIDVDT EDVGDERVLL ENSP00000357812/1-561 DDIEIEMRVP QEAVKLIIGR QGANIKQLRK QTGARIDVDT EDVGDERVLL ENSBTAP00000028777/1-566 DDIEIEMRVP QEAVKLIIGR QGANIKQLRK KTGARIDVDT EDIGDERVLL bmy_18546T0/1-628 DDIEIEMRVP QEAVKLIIGR QGANIKQLRK QTGARIDVDT EDVGDERVLL BACU007262/1-561 DDIEIEMRVP QEAVKLIIGR QGANIKQLRK QTGARIDVDT EDVGDERVLL 101 150 ENSTTRP00000002952/1-561 ISGFPVQVCK AKAAIHQILT ESTPVSEQLS VPQRSVGRII GRGGETIRSI ENSP00000357812/1-561 ISGFPVQVCK AKAAIHQILT ENTPVSEQLS VPQRSVGRII GRGGETIRSI ENSBTAP00000028777/1-566 ISGFPVQVCK AKAAIHQILT ENTPVSEQLS VPQRSVGRII GRGGETIRSI bmy_18546T0/1-628 ISGFPVQVCK AKAAIHQILT ESTPVSEQLS VPQRSVGRII GRGGETIRSI BACU007262/1-561 ISGFPVQVCK AKAAIHQILT ESTPVSEQLS VPQRSVGRII GRGGETIRSI 151 200 ENSTTRP00000002952/1-561 CKASGAKINC DKESEGTLLL SRLIKISGTQ KEVAAAKHLI LEKVSEDEEL ENSP00000357812/1-561 CKASGAKITC DKESEGTLLL SRLIKISGTQ KEVAAAKHLI LEKVSEDEEL ENSBTAP00000028777/1-566 CKASGAKITC DKESEGTLLL SRLIKISGTQ KEVAAAKHLI LEKVSEDEEL bmy_18546T0/1-628 CKASGAKVTC DKESEGTLLL SRLIKISGTQ KE-----HLI LEKVLEDEEL BACU007262/1-561 CKASGARVTC DKESEGTLLL SRLIKISGTQ KEVAAAKHLI LEKVLEDEEL 201 250 ENSTTRP00000002952/1-561 RKRIAHSAET RVPRKQPISV RREEVTEPAG AGKPALWKNT GTSLEQAAPL ENSP00000357812/1-561 RKRIAHSAET RVPRKQPISV RREDMTEPGG AGEPALWKNT SSSMEPTAPL ENSBTAP00000028777/1-566 RKRIAHSAET RVPRKQPISV RREEVTEPGG AREPTLWKNT GTSLKQAAPL bmy_18546T0/1-628 RKRIAYSAET RVPRKQPISV RREEVTEPAG AGEPALWKNT GTSLEKAAPL BACU007262/1-561 RKRIAHSAET RVPRKQPISV RREEVTEPAG AGEPALWKNT GTSLEQAAPL 251 300 ENSTTRP00000002952/1-561 AVPPRRGGGD TSVVGPEERS CRKPNDDNLQ KFGAQTSPET SMFE------ ENSP00000357812/1-561 VTPPPKGGGD MAVVVSKEGS WEKPSDDSFQ KSEAQAIPEM PMFE------ ENSBTAP00000028777/1-566 AVPPHKGDGD VAAVGPEEGS WEKPNDDSFQ RSAVQTSPEM SILTCLCLWL bmy_18546T0/1-628 AVPPHKGGGD TSVVGPEERS CEKPNDDNFQ KFGAQTSPET SMFE------ BACU007262/1-561 AVPPHKGGGD TSVVGPEERS CEKPNDDNFQ KFGAQTSPET SMFE------ 301 350 ENSTTRP00000002952/1-561 IPSPDFSFHA DEFLEVYVSA SEHPNHFWIQ IIGSRSLQLD KLVREMTQHY ENSP00000357812/1-561 IPSPDFSFHA DEYLEVYVSA SEHPNHFWIQ IVGSRSLQLD KLVNEMTQHY ENSBTAP00000028777/1-566 VPSPDFSFHA DEFLEVYVSA SEHPNHFWIQ IIGSRSLQLD KLVSEMTQHY bmy_18546T0/1-628 IPSPDFSFPA DEFLEVYVSA SEHPNHFWIQ IIGSRSLQLD KLVSEMTQHY BACU007262/1-561 IPSPDFSFHA DEFLEVYVSA SEHPNHFWIQ IIGSRSLQLD KLVSEMTQHY 351 400 ENSTTRP00000002952/1-561 ENSLPEDLTV HVGDIVAAPL PTNGSWYRAR VLGTLENGNL DLYFVDFGDN ENSP00000357812/1-561 ENSVPEDLTV HVGDIVAAPL PTNGSWYRAR VLGTLENGNL DLYFVDFGDN ENSBTAP00000028777/1-566 ENSLPEDLTV HVGDIVAAPL PTNGSWYRAR VLGTLENGNL DLYFVDFGDN bmy_18546T0/1-628 ENSLPEDLTV HVGDIVAAPL PTNGSWYRAR VLGTLENGNL DLYFVDFGDN BACU007262/1-561 ENSLPEDLTV HVGDIVAAPL PTNGSWYRAR VLGTLENGNR DLYFVDFGDN 401 450 ENSTTRP00000002952/1-561 GYCPLRDLRV LRSDFLSLPF QAIECSLARI APS------- ---------- ENSP00000357812/1-561 GDCPLKDLRA LRSDFLSLPF QAIECSLARI APS------- ---------- ENSBTAP00000028777/1-566 GDCPLRDLRV LRSDFLSLPF QAIECSLARI APS------- ---------- bmy_18546T0/1-628 GDCPLRDLRV LRSDFLSLPF QAIECSLARI APSGHNPTPV STDPFLGSLY BACU007262/1-561 GDCPLRDLRV LRSDFLSLPF QAIECSLARI APS------- ---------- 451 500 ENSTTRP00000002952/1-561 ----GEQWEE EALDEFDRLT HCAGWKPLVA KISSYVQSGI STWPKIHLYD ENSP00000357812/1-561 ----GDQWEE EALDEFDRLT HCADWKPLVA KISSYVQTGI STWPKIYLYD ENSBTAP00000028777/1-566 ----GEQWEE EALDEFDRLT HCADWKPLVA KISSYVQSGI STWPKIYLYD bmy_18546T0/1-628 DFLRGEQWEE EALDEFDRLT HCADWKPLVA KISSYVQSGI STWPKIHLYD BACU007262/1-561 ----GEQWEE EALDEFDRLT HCADWKPLMA KISSYVQSGI STWPKIHLYD 501 550 ENSTTRP00000002952/1-561 TSNGKKLDIG LELVRKGYAI ELPEDMEENR AVPVTSPNVA TETDVSLRST ENSP00000357812/1-561 TSNGKKLDIG LELVHKGYAI ELPEDIEENR AVPDMLKDMA TETDASLSTL ENSBTAP00000028777/1-566 TSDGKNLDIG LELVRKGYAV ELAEDMEKNR AVPVMLDDLA TETDVSL-SM bmy_18546T0/1-628 TSNGKKLDVG LELVRKGYAV ELPEDMEENR AVPVMLHGVA TETDVSLRST BACU007262/1-561 TSNGKKLDIG LELVRKGYAV ELPEDMEENR AVPVMLHGVA TETDVSLRST 551 600 ENSTTRP00000002952/1-561 VTETKKSPGE MAHTLSCLSL LEAASVSG-- --DDNLEDDY LV-------- ENSP00000357812/1-561 LTETKKSSGE ITHTLSCLSL SEAASMSG-- --DDNLEDDY LL-------- ENSBTAP00000028777/1-566 LTETKKSPGE IANTLSCLSL SEAASMSG-- --DDNLEDDY LL-------- bmy_18546T0/1-628 VTETKKSPGE MANTLSCLSL LGFGIRFGAW REEPVIKISA LLPSLYTRSG BACU007262/1-561 VTETKKSPGE MADTLSCLSL LEAASMSG-- --DDNLEDDC LL-------- 601 650 ENSTTRP00000002952/1-561 ---------- ---------- ---------- --------- ENSP00000357812/1-561 ---------- ---------- ---------- --------- ENSBTAP00000028777/1-566 ---------- ---------- ---------- --------- bmy_18546T0/1-628 LLWTKCICSF HWTTRKCEGW RETNTCPYST TTPCAPSSV BACU007262/1-561 ---------- ---------- ---------- ---------