KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:36:50 2014 Check: 00 .. Name: ENSBTAP00000028780/1-796 Len: 1082 Check: 5848 Weight: 1.00 Name: ENSP00000443824/1-936 Len: 1082 Check: 7162 Weight: 1.00 Name: ENSTTRP00000011238/1-841 Len: 1082 Check: 1994 Weight: 1.00 Name: BACU003356/1-653 Len: 1082 Check: 9619 Weight: 1.00 Name: bmy_01633T0/1-752 Len: 1082 Check: 8603 Weight: 1.00 // 1 50 ENSBTAP00000028780/1-796 ---------- ---------- ---------- ---------- ---------- ENSP00000443824/1-936 MRPRSGGRPG ATGRRRRRLR RRPRGLRCSR LPPPPPLPLL LGLLLAAAGP ENSTTRP00000011238/1-841 ---------- ---------- ---------- ---------- ---------- BACU003356/1-653 ---------- ---------- ---------- ---------- ---------- bmy_01633T0/1-752 ---------- ---------- ---------- ---------- ---------- 51 100 ENSBTAP00000028780/1-796 ---------- ---------- ---------- ---------- ---------- ENSP00000443824/1-936 GAARAKETAF VEVVLFESSP SGDYTTYTTG LTGRFSRAGA TLSAEGEIVQ ENSTTRP00000011238/1-841 ---------- ---------- ---------- ---------- ---------- BACU003356/1-653 ---------- ---------- ---------- ---------- ---------- bmy_01633T0/1-752 ---------- ---------- ---------- ---------- ---------- 101 150 ENSBTAP00000028780/1-796 ---------- ---------- ---------- -----CSFSL SQ-------- ENSP00000443824/1-936 MHPLGLCNNN DEEDLYEYGW VGVVKLEQPE LDPKPCLTVL GK-------- ENSTTRP00000011238/1-841 MHPLGLCNNN DEEDLYEYGW VGVVKLEQPE LDPKPCLTVL GK-------- BACU003356/1-653 MHPLGLCNNN DEEDLYEYGW VGVVKLEQPE LDPKPCLTVL GKTGLADETC bmy_01633T0/1-752 ---------- ---------S FGKVRTRVPT -----CSFSL CQ-------- 151 200 ENSBTAP00000028780/1-796 ---------- ---------- ---------- ---------- ---------- ENSP00000443824/1-936 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000011238/1-841 ---------- ---------- ---------- ---------- ---------- BACU003356/1-653 IFYSELNNVA RGQLIIPVSV VLAKAAVTVH AELPGLVVTC WLVPTFPGLM bmy_01633T0/1-752 ---------- ---------- ---------- ---------- ---------- 201 250 ENSBTAP00000028780/1-796 ---------- ---------- ---------- ---------- ---------- ENSP00000443824/1-936 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000011238/1-841 ---------- ---------- ---------- ---------- ---------- BACU003356/1-653 EAAAVMKGGE HLCEWGEGKG KQRALCVPEF VNTAGLPHLL LVNSGAPEGL bmy_01633T0/1-752 ---------- ---------- ---------- ---------- ---------- 251 300 ENSBTAP00000028780/1-796 ------AKRA VQRGATAVIF DVSENPEAID QLNQGSEDPL KRPVVYVKGA ENSP00000443824/1-936 ------AKRA VQRGATAVIF DVSENPEAID QLNQGSEDPL KRPVVYVKGA ENSTTRP00000011238/1-841 ------AKRA VQRGATAVIF DVSENPEAID QLNQGSEDPL KRPVVYVKGA BACU003356/1-653 LTSGKGAKRA VQRGATAVIF DVSENPEAID QLNQGSEDPL KRPVVYVKGA bmy_01633T0/1-752 ------AKRA VQRGATAVIF DVSENPEAID QLNQGSEDPL KRPVVYVKGA 301 350 ENSBTAP00000028780/1-796 DAIKLMNIVN KQKVARARIQ HRPPRQPTEY FDMGIFLAFF VVVSLVCLIL ENSP00000443824/1-936 DAIKLMNIVN KQKVARARIQ HRPPRQPTEY FDMGIFLAFF VVVSLVCLIL ENSTTRP00000011238/1-841 DAIKLMNIVN KQKVARARIQ HRPPRQPTEY FDMGIFLAFF VVVSLVCLIL BACU003356/1-653 DAIKLMNIVN KQKVARARIQ HRPPRQPTEY FDMGIFLAFF VVVSLVCLIL bmy_01633T0/1-752 DAIKLMNIVN KQKVARARIQ HRPPRQPTEY FDMGIFLAFF VVVSLVCLIL 351 400 ENSBTAP00000028780/1-796 LVKIKLKQRR SQNSMNRLAV QALEKMETRK FNSKSKGRRE GSCGALDTLS ENSP00000443824/1-936 LVKIKLKQRR SQNSMNRLAV QALEKMETRK FNSKSKGRRE GSCGALDTLS ENSTTRP00000011238/1-841 LVKIKLKQRR SQXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX BACU003356/1-653 LVKIKLKQRR SQNSMNRLAV QALEKMETRK FNSKSKGRRE GSCGALDTLS bmy_01633T0/1-752 LVKIKLKQRR SQNSMNRLAV QALEKMETRK FNSKSKGRRE GSCGALDTLS 401 450 ENSBTAP00000028780/1-796 SSSTSDCAIC LEKYIDGEEL RVIPCTHRFH RKCVDPWLLQ HHTCPHCRHN ENSP00000443824/1-936 SSSTSDCAIC LEKYIDGEEL RVIPCTHRFH RKCVDPWLLQ HHTCPHCRHN ENSTTRP00000011238/1-841 XXXXXXXXXX XXXXXXXXEL RVIPCTHRFH RKCVDPWLLQ HHTCPHCRHN BACU003356/1-653 SSSTSDCAIC LEKYIDGEEL RVIPCTHRFH RKCVDPWLLQ HHTCPHCRHN bmy_01633T0/1-752 SSSTSDCAIC LEKYIDGEEL RVIPCTHRFH RKCVDPWLLQ HHTCPHCRHN 451 500 ENSBTAP00000028780/1-796 IIGN--APLP LSLPRGTVFP RCLVGAGRAP RLVSRQTTKA LPPG-PGGTG ENSP00000443824/1-936 IIEQKGNPSA VCVETSN--- ---LSRGRQQ RVT------- LPVHYPGRVH ENSTTRP00000011238/1-841 IIEQKGNPSA VCLETGS--- ---LARGRQQ RVI------- LPVHYPGRVH BACU003356/1-653 IIEQKGNPSA VCLETGS--- ---LARGRQQ RVI------- LPVHYPGRVH bmy_01633T0/1-752 IIEQKGNPSA VCLETGS--- ---LARGRQQ RVI------- LPVHYPGRVH 501 550 ENSBTAP00000028780/1-796 GPGEV-CWRV SLGLSSGFDT TGFLTLDQ-- APGLSSPRAH SLLSRTRGWG ENSP00000443824/1-936 RTNAIPAYPT RTSMDSHGNP VTLLTMDRHG EQSLYSPQTP AYI---RSYP ENSTTRP00000011238/1-841 RASAIPAYPT RTSMDAHGNP VTLLTVDRRG EQGLFPPQTP AYI---RGYP BACU003356/1-653 RASAIPAYPT RTSMDAHGNP VTLLTVDRRG EQGLFPPQTP AYI---RGYP bmy_01633T0/1-752 RASAIPAYPT RTSMDAHGNP VTLLTVDRRG EQGLFPPQTP AYI---RGYP 551 600 ENSBTAP00000028780/1-796 SLRAQKAGCP PHSCFSKR-- VRAFPLRSRL LSGGS----- CHSE-QLGCG ENSP00000443824/1-936 PLHLDHSLAA HRCGLEHRAY SPAHPFRRPK LSGRSFSKAA CFSQYETMYQ ENSTTRP00000011238/1-841 PLHLDHSLAP HRCGLEHRPY SPAPPFRRPK FGGRSFSKAA CFSQYETMYQ BACU003356/1-653 PLHLDHSLAP HRCGLEHRPY SPAPPFRRPK FGGRSFSKAA CFSQYETM-- bmy_01633T0/1-752 PLHLDHSLAP HRCGLEHRPY SPAPPFRRPK FGGRSFSKAA CFSQYETMYQ 601 650 ENSBTAP00000028780/1-796 RWTLIGVTYP EPEGQPPPSL APGSPARAFP PGGGGG-SLL FAP---AAPA ENSP00000443824/1-936 HYYFQGLSYP EQEGQSPPSL APRGPARAFP PSGSG--SLL FPTVVHVAPP ENSTTRP00000011238/1-841 HYYFRGLSYP EQEGQPPPGL TPGGPARAFP PGGGGSSGLL FAPAVHAAPA BACU003356/1-653 ---------- ---------- ---------- ---------- ---------- bmy_01633T0/1-752 HYYFRGLSYP EQEGQPPPGL APGGPARAFP PGGGG---LL FAPAVHAAPA 651 700 ENSBTAP00000028780/1-796 SPLESGSASS FSCYHGHRSV CSGYLADGPG SDSSSSSSSS GSSGQCRCSS ENSP00000443824/1-936 SHLESGSTSS FSCYHGHRSV CSGYLADCPG SD----SSSS SSSGQCHCSS ENSTTRP00000011238/1-841 SHLESGSASS FSCYHGHRSV CSGYLADGPG SD--SSSSSS GSSGQCRCSS BACU003356/1-653 ---------- ---------- ---------- ---------- ---------- bmy_01633T0/1-752 SHLESGSASS FSCYHGHRSV CSGYLADGPG SD---SSSSS GSSGQCRCSS 701 750 ENSBTAP00000028780/1-796 SDSVVDCTEV SNQGVYGSCS TFRSSLSSDY DPFVYRSRSP CRAGDVGG-- ENSP00000443824/1-936 SDSVVDCTEV SNQGVYGSCS TFRSSLSSDY DPFIYRSRSP CRASEAGGSG ENSTTRP00000011238/1-841 SDSVVDCTEV SNQGVYGSCS TFRSSLSSDY DPFVYRSRSP CRAGDMGG-- BACU003356/1-653 ---------- ---------- ---------- ---------- ---------- bmy_01633T0/1-752 SDSVVDCTEV SNQGVYGSCS TFRSSLSSDY DPFVYRSRSP CRTGDVGG-- 751 800 ENSBTAP00000028780/1-796 -SGRGPMVRL DGSPAPEEPP AAARGPSAAR GEPWPGPASV SASASGDQLS ENSP00000443824/1-936 SSGRGPALCF EGSPPPEELP -AVHSHGAGR GEPWPGP--- -ASPSGDQVS ENSTTRP00000011238/1-841 -SCRGPVVRL EGSPPPEEVL AAARGPGAGR GEPWPGP--- -ASPSGDQLS BACU003356/1-653 ---------- ---------- ---------- ---------- ---------- bmy_01633T0/1-752 -SGWGPVVRL EGSPPPEELR AAARRPGAGR GEPWPGP--- -ASPSGDQLS 801 850 ENSBTAP00000028780/1-796 TCSLEMNYSS SSSLEPRGPH SSTSQGGLEA SPSAAPDLRR TWKGAREGPS ENSP00000443824/1-936 TCSLEMNYSS NSSLEHRGPN SSTSEVGLEA SPGAAPDLRR TWKGGHELPS ENSTTRP00000011238/1-841 TCSLEMNYSS SSSLEPRGPN SSTSEGGLEA SPGAAPDLRR TWKGAREGPM BACU003356/1-653 ---------- ---------- ---------- ---------- ---------- bmy_01633T0/1-752 TCSLEMNYSS SSSLEPRGPN SSTSEGGLEA SPGAAPDLRR TWKGAREGPP 851 900 ENSBTAP00000028780/1-796 CACCCEPRAP APEPSAGAAG GGALYLGPPP CEGCGPPGGE SQPASSQGLY ENSP00000443824/1-936 CACCCEPQPS PAGPSAGAAG SSTLFLGPHL YEGSGPAGGE PQSGSSQGLY ENSTTRP00000011238/1-841 CACCCEPQTP APDPGAGAAG GGILFLGPPP CEGCGPQGGE SQPGSSQGPY BACU003356/1-653 ---------- ---------- ---------- ---------- ---------- bmy_01633T0/1-752 CACCCEPQTP APDPGAGAAG GGLLFLGPPP CEGCSPQGGE SQPGSSQGRY 901 950 ENSBTAP00000028780/1-796 GLHPDHLPRT DGVKYEGLPC CFYEEKQVAR -----GRGGS GCYTEDCSVR ENSP00000443824/1-936 GLHPDHLPRT DGVKYEGLPC CFYEEKQVAR ----GGGGGS GCYTEDYSVS ENSTTRP00000011238/1-841 GLHPDHLPRT DGVKYEGLPC CFYEEKQVAH --GGGGGGGG GRYTEDCSVR BACU003356/1-653 ---------T DGVKYEGLPC CFYEEKQVAH --GRGGGGGG GCYTEDCSVR bmy_01633T0/1-752 GLHPDHLPRT DGVKYEGLPC CFYEEKQVAH GGGGGGGGGG GCYTDDCSVR 951 1000 ENSBTAP00000028780/1-796 VQYTLAQEPP VGCHPGARDL SQRVPIIPED VDSDLGLPSD CQGTRGLGPW ENSP00000443824/1-936 VQYTLTEEPP PGCYPGARDL SQRIPIIPED VDCDLGLPSD CQGTHSLGSW ENSTTRP00000011238/1-841 VQYTLAQELP PSCHPGARDL SQRIPIIPED VDCDLGLPSE CQGTRGLSPW BACU003356/1-653 VQHRLAQELP PSCHPGARDL SQRIPIIPED VDCDLGLPSE CQGTRGLGPW bmy_01633T0/1-752 VQYTLAQELP PSCHPGARDL SQRIPIIPED VDCDLGLPSE CQGTRGLGPW 1001 1050 ENSBTAP00000028780/1-796 GGTLPGPDAL WPHRGLGAA- QEERVLCCPA RAPRPPGCPP EDVGAPGASS ENSP00000443824/1-936 GGT-RGPDTP RPHRGLGATR EEERALCCQA RALLRPGCPP EEAGAVRANF ENSTTRP00000011238/1-841 GGTLPGPDAL WPHRGLGAAQ QEEWVPCCPA RAPLSLPCPP EDVGAPGASS BACU003356/1-653 GGTLPGPDAL WPHRGLGAAQ QEERVPCCLA RAPLSPPCPP EDVGAPGASS bmy_01633T0/1-752 GGTLPGP--- ---------- ---------- ---------- ---------- 1051 1100 ENSBTAP00000028780/1-796 PRALRDTRES SATSPKAAG- -----ESG-- -- ENSP00000443824/1-936 PSALQDTQES STTATEAAGP RSHSADSSSP GA ENSTTRP00000011238/1-841 PSAPQDTQDS SATATEAAGP RSRLADSGGP GA BACU003356/1-653 PSAPQDTQDS SATAAEAAGP RSRPADSGSP GA bmy_01633T0/1-752 ---------- ---------- RSCLADSGSP GA