KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:36:50 2014 Check: 00 .. Name: ENSTTRP00000015032/1-1030 Len: 1216 Check: 5853 Weight: 1.00 Name: BACU013645/1-994 Len: 1216 Check: 1383 Weight: 1.00 Name: bmy_01462T0/1-1109 Len: 1216 Check: 1062 Weight: 1.00 Name: ENSP00000253083/1-1068 Len: 1216 Check: 3667 Weight: 1.00 Name: ENSBTAP00000028783/1-1077 Len: 1216 Check: 4820 Weight: 1.00 // 1 50 ENSTTRP00000015032/1-1030 ---------- ---------- ---------- ---------- -AISISKAIN BACU013645/1-994 ---------- -----MFWWS ARGLRPQQPL PEERP--DGG CPAGTGGSPG bmy_01462T0/1-1109 ---------- ----SPVQLH LLSTRP---- ---------- -------PPR ENSP00000253083/1-1068 ---------- MNSIKNVPAR VLSRRPGHSL EAEREQFDKT QAISISKAIN ENSBTAP00000028783/1-1077 ARPGSAGGGR MNSIKNVPAR VLNRRPGHSL EAEREQFDKT QAISISKAIN 51 100 ENSTTRP00000015032/1-1030 TQEAPVKEKH ARR-IILGTH HEKGAFTFWS YAIGLPLPSS SILSWKFCHV BACU013645/1-994 AQGPCLLGKT NHTQLSDQSC SPAAQAGFCP YLPGL----- ----WKLCVV bmy_01462T0/1-1109 LSPCCVHLAL TLVGIIMGTH HEKGAFTFWS YAIGLPLPSS SILSWKLCHV ENSP00000253083/1-1068 TQEAPVKEKH ARR-IILGTH HEKGAFTFWS YAIGLPLPSS SILSWKFCHV ENSBTAP00000028783/1-1077 TQEAPVKEKH ARRSIILGTH HEKGAFTFWS YAIGLPLPSS AILSWKFCHV 101 150 ENSTTRP00000015032/1-1030 LHKVLRDGHP NVLHDCQRYR SNIREIGDLW GHLHDRYGQL VNIY------ BACU013645/1-994 VASGI----- SCSLSCTCHV KKSLEWSGLL -RLENFYFSL ICVLSPLTGW bmy_01462T0/1-1109 LHKVLRDGHP NVLHDCQRYR SNIREIGDLW GHLHDRYGQL VNIY------ ENSP00000253083/1-1068 LHKVLRDGHP NVLHDCQRYR SNIREIGDLW GHLHDRYGQL VNVY------ ENSBTAP00000028783/1-1077 LHKVLRDGHP NVLHDCQRYR SNIREIGDLW GHLHDRYGQL VNIY------ 151 200 ENSTTRP00000015032/1-1030 ---TKLLLTK ISFHLKHP-E FPAGLEVTDE VLEKAAGTDV NNVFQLTVEM BACU013645/1-994 KDRSRLCVAP SPFRWSVPGS LPGGF----- -LTSASSVPS QAIS--ISKA bmy_01462T0/1-1109 ---TKLLLTK ISFHLKHP-E FPAGLEVTDE VLEKAAGTDV NNIFQLTVEM ENSP00000253083/1-1068 ---TKLLLTK ISFHLKHP-Q FPAGLEVTDE VLEKAAGTDV NNIFQLTVEM ENSBTAP00000028783/1-1077 ---TKLLLTK IAFHLKHP-Q FPAGLEVTDE VLEKAAGTDV NNIFQLTVEM 201 250 ENSTTRP00000015032/1-1030 FDYMDCALKL SES-VFRQLN TAIAVSQMSS GQCRLAPLIQ VIQDCSPLYH BACU013645/1-994 INTQEAPVKE KHARLFRQLN TAIAVSQMSS GQCRLAPLIQ VIQDCSHLYH bmy_01462T0/1-1109 FDYMDGELKL SES-VFRQLN TAIAVSQMSS GQCRLAPLIQ VIQDCSHLYH ENSP00000253083/1-1068 FDYMDCELKL SES-VFRQLN TAIAVSQMSS GQCRLAPLIQ VIQDCSHLYH ENSBTAP00000028783/1-1077 FDYMDCELKL SES-VFRQLN TAIAVSQMSS GQCRLAPLIQ VIQDCSHLYH 251 300 ENSTTRP00000015032/1-1030 YTVKLMFKLH SXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX BACU013645/1-994 YTVKLMFKLH SCLPADTLQG HRDRFHEQFH SLRNFFRRAS DMLYFKRLIQ bmy_01462T0/1-1109 YTVKLMFKLH SCLPADTLQG HRDRFHEQFH SLRNFFRRAS DMLYFKRLIQ ENSP00000253083/1-1068 YTVKLLFKLH SCLPADTLQG HRDRFHEQFH SLRNFFRRAS DMLYFKRLIQ ENSBTAP00000028783/1-1077 YTVKLMFKLH SCLPADTLQG HRDRFHEQFH SLRNFFRRAS DMLYFKRLIQ 301 350 ENSTTRP00000015032/1-1030 XXXXXXGPPC F-RASAL-EH IKPVVVIPEE APED-EPENL IEIGSGPPAA BACU013645/1-994 IPRLPEGPPN FLRASALAEH IKPVVVIPEE APEDEEPESL IEIGTGPPAA bmy_01462T0/1-1109 IPRLPEGPPN FLRASALAEH IKPVVVIPEE APEDEEPESL IEIGTGPPAA ENSP00000253083/1-1068 IPRLPEGPPN FLRASALAEH IKPVVVIPEE APEDEEPENL IEISTGPPAG ENSBTAP00000028783/1-1077 IPRLPEGPPN FLRASALAEH IKPVVVIPEE APEDEEPENL IEISTGPPAG 351 400 ENSTTRP00000015032/1-1030 EPAVVADLFE QTFGPPNGSM KDDRDLQIET LKREVETLRT ELDKIQLEAQ BACU013645/1-994 EPAVVADLFE QTFGPPNGSM KDDRDLQMET LKREVETLRT ELDKIQLEAQ bmy_01462T0/1-1109 EPVVVADLFD QTFGPPNGSM KDDRDLQMET LKREVETLRT ELDKIQLEAQ ENSP00000253083/1-1068 EPVVVADLFD QTFGPPNGSV KDDRDLQIES LKREVEMLRS ELEKIKLEAQ ENSBTAP00000028783/1-1077 EPAVVADLFE QTFGPPNGSM KDDRDLQIEA LKREVEMLRS ELDKIKLEAQ 401 450 ENSTTRP00000015032/1-1030 RYMAQLKGQV NALEAELEEQ RKQKQKALVD NEQLRHEVAR LRAAQLEGER BACU013645/1-994 RYMAQLKGQV NALEAELEEQ RKQKQKALVD NEQLRHE--- ---------- bmy_01462T0/1-1109 RYMAQLKGQV NALEAELEEQ RKQKQKALVD NEQLRHEVAR LRAARLEGER ENSP00000253083/1-1068 RYIAQLKSQV NALEGELEEQ RKQKQKALVD NEQLRHELAQ LRAAQLEGER ENSBTAP00000028783/1-1077 RFISQLKGQV NALEAELEEQ RKQKQKALVD NEQLRHELAQ LRAAQVEGER 451 500 ENSTTRP00000015032/1-1030 HQGLREEAEK KASATEARYN -LKEKHSELI TTHAELLGRN ADTAQQLTVT BACU013645/1-994 ---------- ---------- ---------- ---------N ADTAKQLTVT bmy_01462T0/1-1109 DRGLREEAEK KASATEARYN KLKEKHSELI NTHAELLRKN ADTAKQLTVT ENSP00000253083/1-1068 SQGLREEAER KASATEARYN KLKEKHSELV HVHAELLRKN ADTAKQLTVT ENSBTAP00000028783/1-1077 NQGLREEAEK KASATEARYN KLKEKHSELV NTHAELLRKN ADTAKQLTVT 501 550 ENSTTRP00000015032/1-1030 HQSQ-EVARV XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX BACU013645/1-994 QQSQEEVARV KEQLAFQVEQ VKRESEMKLE EQSDQLEKLK RELEAKAGEL bmy_01462T0/1-1109 QQSQEEVARV KEQLAFQVEQ VKRESEMKLE EQSDQLEKLK RELEAKAGEL ENSP00000253083/1-1068 QQSQEEVARV KEQLAFQVEQ VKRESELKLE EKSDQLEKLK RELEAKAGEL ENSBTAP00000028783/1-1077 QQSQEEVARV KEQLVFQVEQ VKRESEMKLE EQSDQLEKLK RELEAKAGEL 551 600 ENSTTRP00000015032/1-1030 XXXXXXXXXX XXXXXXXXXX XXTLSAEKDT LSSEVRQRQA ELVAAQSLVR BACU013645/1-994 VRAQEALSLA EQSGLELSSR LDALSAEKDT LSSVVRQRQA ELVAAQSLVR bmy_01462T0/1-1109 VRAQAALSRA EQSGLELSSR LDALSAEKDT LSSVVRQRQA ELVAAQSLVR ENSP00000253083/1-1068 ARAQEALSHT EQSKSELSSR LDTLSAEKDA LSGAVRQREA DLLAAQSLVR ENSBTAP00000028783/1-1077 VRVQEALSRT EQSGSELSSR LDALSADRDE LSRVVQQREA DLLAAQSLAR 601 650 ENSTTRP00000015032/1-1030 EKEAALDQEQ QRSSRERGEL QGR------- ---------- ---------- BACU013645/1-994 EKEEALSWEQ QRSSRERDEL PGR------- ---------- ---------- bmy_01462T0/1-1109 EKEEALSWEQ QRSSRERGXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000253083/1-1068 ETEAALSREQ QRSSQEQGEL QGR------- ---------- ---------- ENSBTAP00000028783/1-1077 EKEAALSQER QRISRERDEL QGR------- ---------- ---------- 651 700 ENSTTRP00000015032/1-1030 ---------- ---------- --LADKESQE QGLQRRLLDE QFAMLRGTAA BACU013645/1-994 ---------- ---------- --LADKESQE EGLQRRLLDE QFAMLRGTAA bmy_01462T0/1-1109 XXPPPMRVST GAWPAHHRLA LALSRQESQE QGLQRRLLDE QFAMLRGTAA ENSP00000253083/1-1068 ---------- ---------- --LAERESQE QGLRQRLLDE QFAVLRGAAA ENSBTAP00000028783/1-1077 ---------- ---------- --LADKESQE QGLQQRLLDE QFAMLRATAA 701 750 ENSTTRP00000015032/1-1030 EAERILQDAV GKLDDPLHLR CTSSPDYLVS RAQAALDAVS TLEKGHAQYL BACU013645/1-994 EAERILQDAV GKLDDPLHLR CTSSPDYLVS RAQAALDAVS ALEKGHAQYL bmy_01462T0/1-1109 EAERILQDAV GKLDDPLHLR CTSSPDYLVS RAQAALDAVS ALEKGHAQYL ENSP00000253083/1-1068 EAAGILQDAV SKLDDPLHLR CTSSPDYLVS RAQEALDAVS TLEEGHAQYL ENSBTAP00000028783/1-1077 EAERILQDAV GKLDDPLHLR CTSSPDYLVS RAQAALDAVS ALEKGHAQYL 751 800 ENSTTRP00000015032/1-1030 I--------- ---------- ---------- ---------- ---------- BACU013645/1-994 ISTAGASPGS PSPVPEISPS GQGSPRPGGG SCDAALRLCG LAGQERHHRD bmy_01462T0/1-1109 I--------- ---------- ---------- ---------- ---------- ENSP00000253083/1-1068 T--------- ---------- ---------- ---------- ---------- ENSBTAP00000028783/1-1077 T--------- ---------- ---------- ---------- ---------- 801 850 ENSTTRP00000015032/1-1030 ---------- --SRADASAL VAALTRFSHL AADTIVHGSA TSHLAPTDPA BACU013645/1-994 LLQSSSIEGG CPSRADASAL VAALTRFSHL AADTIVHGSA TSHLAPTDPA bmy_01462T0/1-1109 ---------- --SRADASAL VAALTRFSHL AADTIVHGSA TSHLAPTDPA ENSP00000253083/1-1068 ---------- --SLADASAL VAALTRFSHL AADTIINGGA TSHLAPTDPA ENSBTAP00000028783/1-1077 ---------- --SRADASGL VAALTRFSHL TADTIVHGSA TSHLAPTDPA 851 900 ENSTTRP00000015032/1-1030 DRLIDTCREC GVRALELVRQ LQDQQALLQA QPSLVQTPLQ GILQLGQELK BACU013645/1-994 DRLMDTCREC GARALELVGQ LQDQRALLQA QPGLVRIPLQ GILQLGQELK bmy_01462T0/1-1109 DRLMDTCREC GARALELVGQ LQDQRALLQA QPGLVRTPLQ GILQLGQELK ENSP00000253083/1-1068 DRLIDTCREC GARALELMGQ LQDQQALRHM QASLVRTPLQ GILQLGQELK ENSBTAP00000028783/1-1077 DRLIDTCREC GARALELMGQ LQEQQALLQA RPGLVRTPLQ GILQLGQELK 901 950 ENSTTRP00000015032/1-1030 PKILDVRQEE LGAVVDKEMA ATSAAIEDAV RRIEDVMNQA RHASSGVKLE BACU013645/1-994 PKSLDVRQEE LGAMVDKEMA ATSAAIEDAV RRIQDMMNQA RHASSGVKLE bmy_01462T0/1-1109 PKSLDVRQEE LGAMVDKEMA ATSAAIEDAV RRIEDMMNQA RHASSGVKLE ENSP00000253083/1-1068 PKSLDVRQEE LGAVVDKEMA ATSAAIEDAV RRIEDMMNQA RHASSGVKLE ENSBTAP00000028783/1-1077 PKSLDVREEE LGAMVDKEMA ATSAAIEDAV RRIEDMMNQA RHASSGVKLE 951 1000 ENSTTRP00000015032/1-1030 VNERILNSCT DLMKAIRLLV TTSTSLQKEI VESGRGAATQ QEFYAKNSRW BACU013645/1-994 VNERILNSCT DLMKAIRLLV TASTSLQKEI VESGRVSWAA G---LTGPPW bmy_01462T0/1-1109 VNERILNSCT DLMKAIRLLV TASTSLQKEI VESGRGAATQ QEFYAKNSRW ENSP00000253083/1-1068 VNERILNSCT DLMKAIRLLV TTSTSLQKEI VESGRGAATQ QEFYAKNSRW ENSBTAP00000028783/1-1077 VNERILNSCT DLMKAIRLLV TASTSLQKEI VESGRGAATQ QEFYAKNSRW 1001 1050 ENSTTRP00000015032/1-1030 TEGLISAS-- AGWGATQLX- ---------X XXXXXXXXXX XXXXXXXXXX BACU013645/1-994 WPSLVGPGEC --WGPG---- ---------- ---------- ---------- bmy_01462T0/1-1109 TEGLISASKA VGWGATQLVY VAPGRGAAGE SADKVVLHTG KYEELIVCSH ENSP00000253083/1-1068 TEGLISASKA VGWGATQLV- ---------E AADKVVLHTG KYEELIVCSH ENSBTAP00000028783/1-1077 TEGLISASKA VGWGATQLV- ---------E SADKVVLHTG KYEELIVCSH 1051 1100 ENSTTRP00000015032/1-1030 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX BACU013645/1-994 ---------- AAAGLGAGAQ TLILSPLAA- ---------- ---------- bmy_01462T0/1-1109 EIAASTAQLV AASKVKADRH SPHLSRLQEC SRAVNEMAAS VVASTRSGQE ENSP00000253083/1-1068 EIAASTAQLV AASKVKANKH SPHLSRLQEC SRTVNERAAN VVASTKSGQE ENSBTAP00000028783/1-1077 EIAASTAQLV AASKVKADKH SPHLSRLQEC SRTVNEMAAN VVASTKSGQE 1101 1150 ENSTTRP00000015032/1-1030 XXXXX----- -XXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXRVRLG BACU013645/1-994 ---------- -DTMDFSGLS LIKLKKQEME TQVRVLELEK TLEVERVRLG bmy_01462T0/1-1109 QIEDRGECWG PDAMDFSGLS LIKLKKQEME TQVRVLELEK TLEVERVRLG ENSP00000253083/1-1068 QIEDR----- -DTMDFSGLS LIKLKKQEME TQVRVLELEK TLEAERMRLG ENSBTAP00000028783/1-1077 QVEDR----- -DTMDFSGLS LIKLKKQEME TQVRALELEK TLEVERVRLG 1151 1200 ENSTTRP00000015032/1-1030 ELRKQHYMLA GAVGTPSADE PGRPSAAPRG GTSKKPPLAQ KPSVAPRQDQ BACU013645/1-994 ELRKQHYMLA GAVGTPGEEE PGRPSAAPRG GTSKKPPLAQ KPSVAPRQDH bmy_01462T0/1-1109 ELRKQHYMLA GAVGTPGEEE PGWPSTAPRG GTSKKPPLAQ KPSVAPRQDH ENSP00000253083/1-1068 ELRKQHYVLA GASGSPGEEV AIRPSTAPRS VTTKKPPLAQ KPSVAPRQDH ENSBTAP00000028783/1-1077 ELRRQHYLLA GAVGTPGEEE PSQPSATPHS GT-KKPPLAQ KPTVAPRQDH 1201 1250 ENSTTRP00000015032/1-1030 QLDKKDGSYA APLVNY BACU013645/1-994 QLDKKDGSYA AQLVNY bmy_01462T0/1-1109 QLDKKDGSYA AQLVNY ENSP00000253083/1-1068 QLDKKDGIYP AQLVNY ENSBTAP00000028783/1-1077 QLDKKDGSYA AQVVN-