KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:36:52 2014 Check: 00 .. Name: BACU006241/1-252 Len: 405 Check: 4917 Weight: 1.00 Name: ENSP00000265038/1-396 Len: 405 Check: 9464 Weight: 1.00 Name: ENSBTAP00000028792/1-397 Len: 405 Check: 2407 Weight: 1.00 Name: ENSTTRP00000004184/1-396 Len: 405 Check: 8926 Weight: 1.00 Name: bmy_11406T0/1-225 Len: 405 Check: 9845 Weight: 1.00 // 1 50 BACU006241/1-252 ---------- ---------- ---------- ---------- ---------- ENSP00000265038/1-396 MLGFLSARQT GLEDPLRLRR AESTRRVLGL ELNKDRDVER IHGGGINTLD ENSBTAP00000028792/1-397 MLGFLSARQA GLEDPLRLRR AESTRRVLGL ELNKDRDVER IHCSGVNTLD ENSTTRP00000004184/1-396 MLGFLLARQA GLDDPVRLRX XXXXXXVLGL ELNKDRDVER IHGSGVNTLD bmy_11406T0/1-225 ---------- ---------- ---------- ---------- ---------- 51 100 BACU006241/1-252 --------ML SGGSDGVIVL YDLENSSRQP YYTCKAVCSV GRSHPDVHKY ENSP00000265038/1-396 IEPVEGRYML SGGSDGVIVL YDLENSSRQS YYTCKAVCSI GRDHPDVHRY ENSBTAP00000028792/1-397 IEPVEGRYML SGGSDGVIVL YDLENSSRQP YYTCKAVCSV GRSHPDVHKY ENSTTRP00000004184/1-396 IDPVEGRYML SGGSDGVMVL YDLENSSRQP YYTCKAVCSI GRSHPDVHKY bmy_11406T0/1-225 ---------- ---------- ---------- ---------- ---------- 101 150 BACU006241/1-252 SVETVQWYPH DTGMFTSSSF DKTLKVWDTN TLQLNLDIGA RKADIWSQVE ENSP00000265038/1-396 SVETVQWYPH DTGMFTSSSF DKTLKVWDTN TLQT------ --ADVFNFEE ENSBTAP00000028792/1-397 SVETVQWYPH DTGMFTSSSF DKTLKVWDTN TLQI------ --ADVFNFEE ENSTTRP00000004184/1-396 SVETVQWYPH DTGMFTSSSF DKTLKVWDTN TLQI------ --ADVFNFEE bmy_11406T0/1-225 ---------- ---MFTSSSF DKTLKVWDTN TLQV------ ---------- 151 200 BACU006241/1-252 VLTNAMITSK ILAVQVLKLG IQAEEGKEVK KGTDGTSGLY LG-------- ENSP00000265038/1-396 TVYSHHMSPV STKHCLVAVG TRGPKVQLCD LKSGSCSHIL QGHRQEILAV ENSBTAP00000028792/1-397 TVYSHHMSPV ATKHCLVAVG TRGPKVQLCD LKSGSCSHIL QGHRQEILAV ENSTTRP00000004184/1-396 TVYSHHMSPV ATKHCLVAVG TRGPKVQLCD LKSGSCSHIL QGHRQEILAV bmy_11406T0/1-225 ---------- --------IG TRGPKVQLCD L--------- ---------- 201 250 BACU006241/1-252 ---------- --VFADSKAK LWDVRRASGC LITLDQHNGK KSQAVESANT ENSP00000265038/1-396 SWSPRYDYIL ATASADSRVK LWDVRRASGC LITLDQHNGK KSQAVESANT ENSBTAP00000028792/1-397 SWSPRYEYIL ATASADSRAK LWDVRRASGC LITLDQHNGK KSQAAESANT ENSTTRP00000004184/1-396 SWSPRYEYIL ATASADSKAK LWDVRRASGC LITLDQHNGE KSQAVESANT bmy_11406T0/1-225 ---------- ---SADSKAK LWDVRRASGC LITLDQHNGK KSQAVESANT 251 300 BACU006241/1-252 AHNGKVNGLC FTSDGLHLLT VGTDNRMRLW NSSNGENTL- ---------- ENSP00000265038/1-396 AHNGKVNGLC FTSDGLHLLT VGTDNRMRLW NSSNGENTLV NYGKVCNNSK ENSBTAP00000028792/1-397 AHNGKVNGLC FTSDGLHLLT VGTDNRMRLW NSSNGENTLV NYGKVYNDSR ENSTTRP00000004184/1-396 AHNGKVNGLC FTSDGLHLLT VGTDNRMRLW NSSNGENTLV NYGKVCNDSR bmy_11406T0/1-225 AHNGKVNGLC FTSDGLHLLT VGTDNRMRLW NSSNGENTLV NYGKVCNDSR 301 350 BACU006241/1-252 ---------- ---------- ---------- ---------- ---------- ENSP00000265038/1-396 KGLKFTVSCG CSSEFVFVPY GSTIAVYTVY SGEQITMLKG HYKTVDCCVF ENSBTAP00000028792/1-397 KGLKFTVSSG CSSEFVFVPY GSTIAVYTIY SGEQITMLKG HYKSVDCCVF ENSTTRP00000004184/1-396 KGLKFTVSCG CSSEFVFVPY GSTIAVYTVY SGEQITMLKG HYKSVDCCVF bmy_11406T0/1-225 KGLKFTVSCG CSSEFVFVPY GSTIAVYTIY SGEQITMLKG HYKSVDCCVF 351 400 BACU006241/1-252 -----ELYSG SRDCNILAWI PSLYESVP-D DEE------V NIIYTNCTVT ENSP00000265038/1-396 QSNFQELYSG SRDCNILAWV PSLYEPVP-D DDETTTKSQL NPAFEDAWSS ENSBTAP00000028792/1-397 QSNFQELYSG SRDCNILAWV PSLCESVPDD DDETSTRSQL NPAFEDAWSS ENSTTRP00000004184/1-396 QSNFQELYSG SRDCNILAWI PSLHESVR-D DEETSTKAQL NPAFEDAWSS bmy_11406T0/1-225 QSNFQELYSG SRDCNILAWI PSVYESVP-D DEETSTRSQL NPAFEDAWSS 401 450 BACU006241/1-252 SKS-- ENSP00000265038/1-396 SDEEG ENSBTAP00000028792/1-397 SDEEG ENSTTRP00000004184/1-396 SDEEG bmy_11406T0/1-225 SDEEG