KEY:
    ENSP* - Homo sapiens (Human)
    ENSBTA* - Bos taurus (Cow)
    ENSTTR* - Tursiops truncatus (Dolphin)
    bmy_* - Balaena mysticetus (Bowhead whale)
    BACU* - Balaenoptera acutorostrata (Minke whale)

Copy from below the line for a valid .msf file.

----------------------------------------------------------------------------------
                
NoName   MSF: 5  Type: P  Thu May 15 17:36:52 2014  Check: 00 ..

 Name: ENSP00000296597/1-169     Len:    225  Check:  1964  Weight:  1.00
 Name: ENSBTAP00000028793/1-168  Len:    225  Check:  6915  Weight:  1.00
 Name: ENSTTRP00000004188/1-167  Len:    225  Check:  3106  Weight:  1.00
 Name: bmy_11407T0/1-225         Len:    225  Check:  3168  Weight:  1.00
 Name: BACU006239/1-85           Len:    225  Check:  8142  Weight:  1.00

//


                          1                                                   50
ENSP00000296597/1-169     MGWSQDLFRA LWRSLSREVK EHVGTDQFGN KYYYIPQYKN WR-------- 
ENSBTAP00000028793/1-168  MGWSQRLFGV IRRALSKEVK EQVGTDRFGN KYYYIPEYKN WR-------- 
ENSTTRP00000004188/1-167  MGWSQNLFRV LWRALSKEVK EQVGTDLFGN KYYYIPEYKN WR-------- 
bmy_11407T0/1-225         MGWSQNLFRV LWRALSKEVK EQVGTDRFGN KYYYIPEYKN WREFMGQSFL 
BACU006239/1-85           ---------- ---------- ---------- ---------- ---------- 


                          51                                                 100
ENSP00000296597/1-169     ---------- ---------- GQTIREKRIV EAANKKEVDY EAGDIPTEWE 
ENSBTAP00000028793/1-168  ---------- ---------- GQTIREKRIV EAANKSEIDY EVGDIPTEWE 
ENSTTRP00000004188/1-167  ---------- ---------- GQTIREKRIV ESANKREIDY EVGDIPAEWE 
bmy_11407T0/1-225         VTFSRVAQLF GAVSFMQMLT GQTIREKRIV ESANKREIDY EVGDIPTEWE 
BACU006239/1-85           ---------- ---------- ---------- ---------- ---------- 


                          101                                                150
ENSP00000296597/1-169     ---------- ---------- --------AW IRRTRKTPPT MEEILKNEKH 
ENSBTAP00000028793/1-168  ---------- ---------- --------AW IRKTRQTPPT MEEIMKNEKC 
ENSTTRP00000004188/1-167  ---------- ---------- --------AW IRKTRKTPPT MEEIMKNEKH 
bmy_11407T0/1-225         DKDGHLIPVR TLELSQDDFI GEHLWTALSL FSQMLEYGSK VQEIMKNEKY 
BACU006239/1-85           ---------- ---------- ---------- ---------- MQEIMKNEKY 


                          151                                                200
ENSP00000296597/1-169     REEIKIKSQD FYEKEKLLSK ETSEELLPPP VQTQIKGHAS APYFGKEEPS 
ENSBTAP00000028793/1-168  REEIQMKSQD FYEKEKLLQE ESNKE-LPPP VQTQIKGHAS APYFGKDEPS 
ENSTTRP00000004188/1-167  KEEI--KTKD FYEKEKLLRE ESSKEHLAPP VQTQIKGHAS APYFGKEESS 
bmy_11407T0/1-225         KEEIKMKTKD FYEKEKLLRE ESNKEHLAPP VQTQIKGHAS APDFGKEESL 
BACU006239/1-85           KEEIKMKTKD FYEKEKLLRE ESNKEHLVPP VQTQIKGHAS APDFGKEESS 


                          201                                                250
ENSP00000296597/1-169     VAPSSTGKTF QPGSWMPRDG KSHNQ 
ENSBTAP00000028793/1-168  VSPTSTGKTF QPGSWMPHGD KGHSQ 
ENSTTRP00000004188/1-167  VAPTSTGKTF QPGSWMPQDG KSHNQ 
bmy_11407T0/1-225         VAPTSTGKTF QPGSWMPQDG KSHNQ 
BACU006239/1-85           VAPTSTGKTF QPGSWMPQDG KSHNQ