KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:36:54 2014 Check: 00 .. Name: ENSP00000242351/1-902 Len: 909 Check: 8811 Weight: 1.00 Name: ENSBTAP00000028806/1-898 Len: 909 Check: 6530 Weight: 1.00 Name: ENSTTRP00000005729/1-795 Len: 909 Check: 3308 Weight: 1.00 Name: bmy_04318T0/1-896 Len: 909 Check: 2757 Weight: 1.00 Name: BACU006751/1-896 Len: 909 Check: 4149 Weight: 1.00 // 1 50 ENSP00000242351/1-902 MADPEVCCFI TKILCAHGGR MALDALLQEI ALSEPQLCEV LQVAGPDRFV ENSBTAP00000028806/1-898 MADPGVCCFI TKILCAHGGR MALEELLHEM QLSEEQLCEV LKEAGPDRFV ENSTTRP00000005729/1-795 ---------- ---------- ---------- ---------- ---------- bmy_04318T0/1-896 MADPGVCCFI TKILCAHGGR MALEALLDEM QLSEAQLCEV LEEAGPDRFV BACU006751/1-896 MADPGVCCFI TKILCAHGGR MALEALLDEM QLSEAQLCEV LEEAGPDRFV 51 100 ENSP00000242351/1-902 VLETGGEAGI TRSVVATTRA RVCRRKYCQR PCDNLHLCKL NLLGRCNYSQ ENSBTAP00000028806/1-898 VLEMGGKEGV TRSVVATTRA RVCRRKYCNK PCGNLHLCKL NLLGRCHYSQ ENSTTRP00000005729/1-795 ---------- ---------- ---------- ---------- ---------- bmy_04318T0/1-896 VLETGGKEGV IRSVVATTRA RVCRRKYCSK PCGNLHLCKL NLLGRCHYSQ BACU006751/1-896 VLETGGKDGV IRSVVATTRA RVCRRKYCSK PCGNLHLCKL NLLGRCHYSQ 101 150 ENSP00000242351/1-902 SERNLCKYSH EVLSEENFKV LKNHELSGLN KEELAVLLLQ SDPFFMPEIC ENSBTAP00000028806/1-898 SERNLCKYSH EVLSEDNFRV LTNHGLSGLN QEELAVLLLQ SDPFFMPEIC ENSTTRP00000005729/1-795 ---NLCKYSH EILSEDNFKV LKNHALSGLN KEELAVLLLQ NDP-FMPEIC bmy_04318T0/1-896 SERNLCKYSH EILSEDNFKV LKNHALSGLN KEELAVLLLQ NDPFFMPEIC BACU006751/1-896 SERNLCKYSH EILSEDNFKV LKNHALSGLN KEELAVLLLQ NDPFFMPEIC 151 200 ENSP00000242351/1-902 KSYKGEGRQQ ICNQQPPCSR LHICDHFTRG NCRFPNCLRS HNLMDRKVLA ENSBTAP00000028806/1-898 KNYKGEGGRQ ICNQQPPCER LHICEHFTRG NCGYANCFRS HNLMDRRVLA ENSTTRP00000005729/1-795 KNYKGEGGRQ ICNQQPPCER LHVCEHFTRG NCGYANCFRS HNLMDRKVLA bmy_04318T0/1-896 KNYKGEGGKQ TCNQRPPCER LHVCEHFTRG NCGYANCFRS HNLMDRKVLA BACU006751/1-896 KNYKGEGGKQ TCNQRPPCER LHVCEHFTRG NCGYANCFRS HNLMDRKVLA 201 250 ENSP00000242351/1-902 IMREHGLNPD VVQNIQDICN SKHMQKNPPG PRAPSSHRRN MAYRARSKSR ENSBTAP00000028806/1-898 VMREHGLSSS VVQNIQDICN SRHRQKKPSA WKAPPPHRRD LAFRGRSKSR ENSTTRP00000005729/1-795 IMREHGLSSR VVQNIQDICN SRHRQKKPSG RRAPPSHRRD AAHRGRSKSR bmy_04318T0/1-896 IMREHGLSSS VVQNIQDICN SRHRQKKPSG WRAPSSHRRD AAYRGRSKSR BACU006751/1-896 IMREHGLSSS VVQNIQDICN SRHRQKKPSG WRAPPSHGRD AAYRGRSKSR 251 300 ENSP00000242351/1-902 DRFFQGSQEF LASASASAER SCTPSPDQIS HRASL-EDAP VDDLTRKFTY ENSBTAP00000028806/1-898 DR---GSEEF LPAASASAQR SCSPSPEPPG HRGSVASDGP VEDLARQFSH ENSTTRP00000005729/1-795 DR---GSGDS FPSAAASAQR SCPPSPDPTG RGSPP-DDGP VKDLAHKFTH bmy_04318T0/1-896 DR---GSGEA LPPAPASAQR SCPPSPDPTG RRSPP-DDAP VKDLAHKFTH BACU006751/1-896 DR---GSGEA LPSAAASAQR SCPPSPDPTG RRSPP-DDVP IKDLAHKFTH 301 350 ENSP00000242351/1-902 LGSQDRARPP SGSSKATDLG GTSQAGTSQR FLENGSQEDL LHGNPGSTYL ENSBTAP00000028806/1-898 LGSQECPPPA SNPSAAVVLG GTPQGGGNQR LAENGSAKDL FYGNHSHAPL ENSTTRP00000005729/1-795 LGSQECPPPS SGSSAASNLG GTGQRGASQR FAENGSPEDL FYGNHSNTYV bmy_04318T0/1-896 LGSQECPPPS SGSSAAANLG GTGQGGASQR FAENGAPADL FYGNHSNTYF BACU006751/1-896 LGSQECPPPS SGSSAAANLG GTGQGGASQR FAENGAPADL FYGNHSNAYF 351 400 ENSP00000242351/1-902 ASNSTSAPNW KSLTSWTNDQ GARRKTVFSP TLPAARSSLG SLQTPEAVTT ENSBTAP00000028806/1-898 TFDLKPAFNW KGPASWQNDQ DTGKKS-WLP SSPVFSSSPG SPQTPE---T ENSTTRP00000005729/1-795 TFDSTSSPKW KGPASWQNDQ DTGRESLFSS SQAVSFSPLG SPQIPETVTT bmy_04318T0/1-896 TFDSTSAPKW KGPASWQNDQ DTGRVSLFSP SQAVSFSPLG SPQTPETITT BACU006751/1-896 TFDSTSAPKW KGPASWQNDQ DTGRESLFSP SQAVSFSPLG SPQTPETITT 401 450 ENSP00000242351/1-902 RKGTGLLSSD YRIINGKSGT QDIQPGPLFN NNADGVATDI TSTRSLNYKS ENSBTAP00000028806/1-898 RKTTAVLSSD HVNAERRSGN QDGQHFPLFA DKADGMAVDT TSTRRANYQT ENSTTRP00000005729/1-795 RKSTAILSSD CVNTEGRRGN QDSQHFPLFN NNVDDMATDA TSMRLLNHKT bmy_04318T0/1-896 RKSTAILSSD CVNTEGRRGN QDSQHFPLCN NNVDGMATDA ASVRSLNYKT BACU006751/1-896 RKSTAILSSD CVNTAGRRGN QDSQHFPLFN NNVDGMATDA ASVRSLNYKT 451 500 ENSP00000242351/1-902 TSSGHREISS PRIQDAGPAS RDVQATGRIA DDADPRVALV NDSLSDVTS- ENSBTAP00000028806/1-898 PSSRQREKSL PRNPDTGTPR SHLPTAGQMT G--DGAAAFV NDSVPNVAS- ENSTTRP00000005729/1-795 TASRQREKSL PRGQDTGVTR SHLQPAGQMT AANDGATAFV NDSVSDVAS- bmy_04318T0/1-896 TASRQREKSL PRGQDTGVTR SHLQAAGQMT AADDGAVAFA NGKHTEKTFW BACU006751/1-896 TASRQREKSL PRGQDTGVTR SHLQAAGQMT AADDGAMAFA NGKHTEKTFW 501 550 ENSP00000242351/1-902 TTSSRVDDHD SEEICLDHLC KGCPLNGSCS KVHFHLPYRW QMLIGKTWTD ENSBTAP00000028806/1-898 TISSTMNEHS SNEICLDHLY KSCQLTKSCN KVHFHLPYRW QMLLANSWVD ENSTTRP00000005729/1-795 TECSTRDEHG SNEICLDHLY KGCQLSERCN KVHFHLPYRW QM-TGKIWMD bmy_04318T0/1-896 ASLSTVPPNG SSKVI----- DETTDVESCN KVHFHLPYRW QMLLANTWMD BACU006751/1-896 ASLSTVPPNG SSKVI----- DETTNVESCN KVHFHLPYRW QMLLANTWMD 551 600 ENSP00000242351/1-902 FEHMETIEKG YCNPGIHLCS VGSYTINFRV MSCDSFPIRR LSTPSSVTKP ENSBTAP00000028806/1-898 LPFMEDIEKA FCDPKNCSVS VRTYNINFQK MICDFNPVRR ISTPSSVTQP ENSTTRP00000005729/1-795 LPFMEDVEKA FCDPQVCNIS IGNYKISFQK MTCDYKPIRR LSTPSSVTMP bmy_04318T0/1-896 LPLMENIEKA FCDPKVCTVS IGNYKISFQK MTCDCNHVRR LSTPSSVTRP BACU006751/1-896 LPHMENIEKA FCDPKVCTVS IGNYKISFQK MTCDYNPVRR LSTPSSVTMP 601 650 ENSP00000242351/1-902 ANSVFTTKWI WYWKNESGTW IQYGEEKDKR KNSNVDSSYL ESLYQSCPRG ENSBTAP00000028806/1-898 PSSLLTTKWI WYWRNGT-KW VPYGEKKDNE QISSIDSSYL ESLFLSCPRG ENSTTRP00000005729/1-795 AGSLFTTKWI WYWRNGYDKW VQYGEKKDNE HISNIDSSYL ESLFLSCRRG bmy_04318T0/1-896 ASSLFTTKWI WYWRNGYDKW VQYGEKKDNE QVSNIDSSYL ESLFLSCPRG BACU006751/1-896 ASSLFTTKWI WYWRNGYDKW VQYGEKKDNE QVSNVDSSYL ESLFLSCPRG 651 700 ENSP00000242351/1-902 VVPFQAGSRN YELSFQ-GMI QTNIASKTQK DVIRRPTFVP QWYVQQMKRG ENSBTAP00000028806/1-898 IVPFQAGSRN YELSFQEGMI QTNIASKTQK DVIRRPTFVS YWDVEQVKRR ENSTTRP00000005729/1-795 IVPFQAGSQN YELSFQ-GMI QTNIASKTQK DIVRRPTFVS YWDVEQVKHG bmy_04318T0/1-896 IVPFQAGSQN YELSFQ-GMI QTNIASKTQK DIVRRPTFVS YWDVEQVKRR BACU006751/1-896 IVPFQAGSQN YELSFQ-GMI QTNIASKTQK DIVRRPTFVS YWDVEQVKRG 701 750 ENSP00000242351/1-902 PDHQPAKTSS VSLTATFRPQ EDFCFLSSKK YKLSEIHHLH PEYVRVSEHF ENSBTAP00000028806/1-898 QDPQQGQTSS EPFINIYLPQ PDTSVPGSNG FELLEIPSNT PEYAKVSDHF ENSTTRP00000005729/1-795 QVHQQVRTQP EPFTSVFSPQ RGTCTSSSTG YELFEINNDS LEYAKVSEHF bmy_04318T0/1-896 QDHQQVRTQP EPFISVFLPQ RDTCVSSXNG YELFEINDGS LEYAKVSERF BACU006751/1-896 QDHQQVRTQP EPFTSIFLPQ RNTCVSSSNG YELFEINNDS LEYAKVSERF 751 800 ENSP00000242351/1-902 KASMKNFKIE KIKKIENSEL LDKFTWKKSQ MKEEGKLLFY ATSRAYVESI ENSBTAP00000028806/1-898 KASMRNFKIE KIKKVQNAQL LEAFKSKKNE MKREEQILFC ATERSNVASI ENSTTRP00000005729/1-795 KASMKNFKIE KIKKIRNAKL LKAFERKKKE MKRDERILFC AVRRTHVESV bmy_04318T0/1-896 KASMKNFKIE KIRKIQNAKL LKAFERKKKE MKREEQILFC AMRRTHIESI BACU006751/1-896 KASMKNFKIE KIRKIRNAKL LKAFERKKKE MKRDELILFC AMRRTHVESI 801 850 ENSP00000242351/1-902 CSNNFDSFLH ETHENKYGKG IYFAKDAIYS HKNCPYDAKN VVMFVAQVLV ENSBTAP00000028806/1-898 CKNNFDWLLH GSHDTKYGKG NYFTKDAFSS HKNCPFDSRN IVMFVARVLV ENSTTRP00000005729/1-795 CANNFDWVIH GICDTKYGKG NYFTKDAINS HKNCLCDPKN IVMFVARVLV bmy_04318T0/1-896 CANNFDWVSH GIRDTKYGKG NYFTKDAINS HKNCLCDPKN IVMFVARVLV BACU006751/1-896 CANNFDWVLH GIRDTKYGKG NYFTKDAINS HKNCLCDPKN IVMFVARVLV 851 900 ENSP00000242351/1-902 GKFTEGNITY TSPPPQFDSC VDTRSNPSVF VIFQKDQVYP QYVIEYTE-- ENSBTAP00000028806/1-898 GNFIEGHTSY RSPPLQYDSC VDTRLNPSVF VIFQKDQIYP EYVIEYTEPE ENSTTRP00000005729/1-795 GDFIEGHKAY MSPPLRYDSC VDTRLNPSVF VIPQKDQIYP EYVIEYTE-- bmy_04318T0/1-896 GDFIEGHKAY VSPPLQYDSC VDTRLNPSVF VIFQKDQIYP EYVIEYTE-- BACU006751/1-896 GDFIEGHMAY VSPPLQYDSC VDTRLNPSVF VIFQKDQIYP EYVIEYTE-- 901 950 ENSP00000242351/1-902 --DKACVIS ENSBTAP00000028806/1-898 RSEKPCLIS ENSTTRP00000005729/1-795 -TDKACVIS bmy_04318T0/1-896 -TDKACVIS BACU006751/1-896 -TDKACVIS