KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:36:54 2014 Check: 00 .. Name: bmy_14631T0/1-192 Len: 379 Check: 2947 Weight: 1.00 Name: ENSP00000310375/1-377 Len: 379 Check: 8090 Weight: 1.00 Name: ENSTTRP00000000828/1-368 Len: 379 Check: 5975 Weight: 1.00 Name: ENSBTAP00000028815/1-298 Len: 379 Check: 9016 Weight: 1.00 // 1 50 bmy_14631T0/1-192 MAREEQCREG LGYDRVPPLE RGRPDAGSYA PDTKPSDLQL SSRLPPCFSH ENSP00000310375/1-377 -MTQEPFREE LAYDRMPTLE RGRQDPASYA PDAKPSDLQL SKRLPPCFSH ENSTTRP00000000828/1-368 -----MAREE LGYDRMPPLE RGRPDAGSYA PDTKPSDLQL SSRLPPCFSH ENSBTAP00000028815/1-298 MAREEQCREG LAYDRMPPLE RGRPDAAGYA LDTKPGDLQL SSRLPPCFSR 51 100 bmy_14631T0/1-192 KTWVFSVLMG SCLLVTSGFS LYLGNVFPLE MDYLRCAAGS CIPSAIVSFA ENSP00000310375/1-377 KTWVFSVLMG SCLLVTSGFS LYLGNVFPAE MDYLRCAAGS CIPSAIVSFT ENSTTRP00000000828/1-368 KTWVFSVLMG SCLLVASGFS LYLGNVFPLE MDYLRCAAGS CIPSAIVSFA ENSBTAP00000028815/1-298 KTWVFSVLMG GCLLVTSGFS LYLGNVFPLE MDYLRCAAGS CIPSAIVSFA 101 150 bmy_14631T0/1-192 VWRRNVSAIP NFQILFVSTF AVTTTCLIWF GCKLVLNPSA VDVS------ ENSP00000310375/1-377 VSRRNANVIP NFQILFVSTF AVTTTCLIWF GCKLVLNPSA ININFNLILL ENSTTRP00000000828/1-368 VWRRNVSAIP NFQILFVSTF AVTTTCLIWF GCKLVLNPSA VDINFNLILL ENSBTAP00000028815/1-298 VSRRNVSAIP HFQILFVSTF AVTTSCLIWF GCKLVLNPSA VDINFNLILL 151 200 bmy_14631T0/1-192 ---------- ---------- ---------- ---------P WKAT------ ENSP00000310375/1-377 LLLELLMAAT VIIAARSSEE DCKKKKGSMS DSANILDEVP FPARVLKSYS ENSTTRP00000000828/1-368 LLLELFMAAT VIISARSSEA HC-KQKGSIS ESTNILYEVT FPARVLKSYS ENSBTAP00000028815/1-298 LLLELFMAAT VIISARSSEA PC-KQKGSIS ESSSVLYEVT FPARVLKSYS 201 250 bmy_14631T0/1-192 ---------- ---------- ---------- ----WVLPG- ---------S ENSP00000310375/1-377 VVEVIAGISA VLGGIIALNV DDSVSGPHLS VTFFWILVAC FPSAIASHVA ENSTTRP00000000828/1-368 VIEVIAGVSA ILGGVIALNV DDAISGPHLS VTFFWILVAC FPSAIASHVT ENSBTAP00000028815/1-298 VIEVVAGVSA ILGGVIALNV DDTVSGPHFS VTFFWVLVAC FPSAIASHVT 251 300 bmy_14631T0/1-192 QEPRALVPLG LLRPVGSELA LVSYLLGSYT G-------NV YRSS------ ENSP00000310375/1-377 AECPSKCLVE VLIAISSLTS PLLFTASGYL SFSIMRIVEM FKDYPPAIKP ENSTTRP00000000828/1-368 AECPSRSLVE VLIAICSLAA PLLFTASGYL SFSVMRIMDV FKDYPPAFKQ ENSBTAP00000028815/1-298 AECPSRSLVE VLIAVCSLAA PLLFTASGYL SFSIMRIMDV FKDYPPAFK- 301 350 bmy_14631T0/1-192 ---------- ---------- ---------- ---------- ---------- ENSP00000310375/1-377 SYDVLLLLLL LVLLLQAGLN TGTAIQCVRF KVSARLQGAS WD-TQNGPQE ENSTTRP00000000828/1-368 SYDALLLLLM LELLLQAGLN TATVIQCVRF KA-----GAS WDAAQTGPQG ENSBTAP00000028815/1-298 ---------- ---------- ---------- ---------- ---------- 351 400 bmy_14631T0/1-192 ---------- ---------- --------- ENSP00000310375/1-377 RLAGEVARSP LKEFDKEKAW RAVVVQMAQ ENSTTRP00000000828/1-368 RPAGEVARSP LKEFDKEKAW RAVMVQMAQ ENSBTAP00000028815/1-298 ---------- ---------- ---------