KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:36:55 2014 Check: 00 .. Name: ENSTTRP00000009137/1-475 Len: 482 Check: 8587 Weight: 1.00 Name: ENSP00000376611/1-410 Len: 482 Check: 5553 Weight: 1.00 Name: ENSBTAP00000028828/1-407 Len: 482 Check: 3300 Weight: 1.00 Name: bmy_04805T0/1-387 Len: 482 Check: 6108 Weight: 1.00 Name: BACU019597/1-474 Len: 482 Check: 2508 Weight: 1.00 // 1 50 ENSTTRP00000009137/1-475 GSAGRRVGLA WGEGGLETWG RSLSPAAVPV LPAIESKCLV LPYRSTCPAV ENSP00000376611/1-410 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000028828/1-407 ---------- ---------- ---------- ---------- ---------- bmy_04805T0/1-387 ---------- ---------- ---------- ---------- ---------- BACU019597/1-474 GSAGRRVGLA WG-GGLETWG RSL-PAAVPV RPAIESKCL- LPYRSTCAAV 51 100 ENSTTRP00000009137/1-475 LQCPVARLPG RSSCARDRQQ GMEAENAGSC PLQHAQAFYT FPFQQMMAEV ENSP00000376611/1-410 ---------- ---------- -MEAENAGSY SLQQAQAFYT FPFQQLMAEA ENSBTAP00000028828/1-407 ---------- ---------- -METVNAGSY SLQQAQAFYT FPFQQMMTEA bmy_04805T0/1-387 ---------- ---------- -MEAENAGSY SLQQAQAFYT FPFQQMMTEV BACU019597/1-474 LQSPVARLPG RSSCARDRQQ GMEAENAGSY SLQQAQAFYT FPFQQMMTEV 101 150 ENSTTRP00000009137/1-475 P-MAVMNEQE MP-EVPAPAP AQEPTQET-P KGRKRKPRKT EPKTPVEPKK ENSP00000376611/1-410 PNMAVVNEQQ MPEEVPAPAP AQEPVQEA-P KGRKRKPRTT EPKQPVEPKK ENSBTAP00000028828/1-407 PDMAVINAQE MPAEVPAPAP AQEPTRETPP KGRKRKPRTT EPKTPVEPPE bmy_04805T0/1-387 P-MAVMNEQE MPEEVPAPAP AQEPTQET-P KGRKRKPRKT EPKTPVEPKK BACU019597/1-474 P-MAVMNEQE MPGEVPAPAP AQEPTQET-P KGRKRKPRKT EPKTPVEPKK 151 200 ENSTTRP00000009137/1-475 PAEAKKSGKS TKSKEKQEKI TDTFKVKRKV DRFNGVSEAE LLTKTLPDIL ENSP00000376611/1-410 PVESKKSGKS AKSKEKQEKI TDTFKVKRKV DRFNGVSEAE LLTKTLPDIL ENSBTAP00000028828/1-407 PAEAKKSGKS TKSKEKQEKI TDTFKVKRKV DRFNGVSEAE LLTKTLPDIL bmy_04805T0/1-387 PAEAKKSGKS TKSKEKQEKI TDTFKVKRKV DRFNGVSEAE LLTKTLPDIL BACU019597/1-474 PTEAKKSGKS TKSKEKQEKI TDTFKVKRKV DRFNGVSEAE LLTKTLPDIL 201 250 ENSTTRP00000009137/1-475 TFNLDIVIIG INPGLMAAYK GHHYPGPGNH FWKCLFMSGL SEVQLNHMDD ENSP00000376611/1-410 TFNLDIVIIG INPGLMAAYK GHHYPGPGNH FWKCLFMSGL SEVQLNHMDD ENSBTAP00000028828/1-407 TFNLDIVIIG INPGLMAAYK GHHYPGPGNH FWKCLFMSGL SEVQLSHMDD bmy_04805T0/1-387 TFNLDIVINS NNR------- ---------- --KCLFMSGL SEVQLNHMDD BACU019597/1-474 TFNLDIVIIG INPGLMAAYK GHHYPGPGNH FWKCLFMSGL SEVQLNHMDD 251 300 ENSTTRP00000009137/1-475 HTLPGKYGIG FTNMVERTTP GSKDLSSKEV REGGRILVQK LQKYQPRIAV ENSP00000376611/1-410 HTLPGKYGIG FTNMVERTTP GSKDLSSKEF REGGRILVQK LQKYQPRIAV ENSBTAP00000028828/1-407 HTLPGKYGIG FTNMVERTTP GSKDLSSKEF REGGRILVQK LQKYQPRIAV bmy_04805T0/1-387 HTLPGKYGIG FTNMVERTTP GSKDLSSKEF REGGRILVQK LQKYQPRIAV BACU019597/1-474 HTLPGKYGIG FTNMVERTTP GSKDLSSKEF REGGRILVQK LQKYQPRIAV 301 350 ENSTTRP00000009137/1-475 FNGKCIYEIF SKEVFGVKVK NLEFGLQPHK IPDTETLCYV MPSSSARCAQ ENSP00000376611/1-410 FNGKCIYEIF SKEVFGVKVK NLEFGLQPHK IPDTETLCYV MPSSSARCAQ ENSBTAP00000028828/1-407 FNGKCIYEIF SKEVFGVKVK NLEFGLQPHK IPDTETLCYV MPSSSARCAQ bmy_04805T0/1-387 FNGKCIYDIF SKEVFGIKVK NLEFGLQPHK IPDTETLCYV MPSSSARCAQ BACU019597/1-474 FNGKCIYDIF SKEVFGIKVK NLEFGLQPHK IPDTETLCYV MPSSSARCAQ 351 400 ENSTTRP00000009137/1-475 FPRAQDKVHY YIKLKDLRDQ LKGIERNPDV QEVQYTFDLQ LAQXXXXXXX ENSP00000376611/1-410 FPRAQDKVHY YIKLKDLRDQ LKGIERNMDV QEVQYTFDLQ LAQEDAKKMA ENSBTAP00000028828/1-407 FPRAQDKVHY YIKLKDLRDQ LKGIERNTDV QEVQYTFDLQ LAQEDAKKMA bmy_04805T0/1-387 FPRAQDKVHY YIKLKDLRDQ LKGIERNTEV QEVQYTFDLR LAQEDAKKMA BACU019597/1-474 FPRAQDKVHY YIKLKDLRDQ LKGIERNTEV QEVQYTFDLR LAQEDAKKMA 401 450 ENSTTRP00000009137/1-475 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXD--- -SGGSTFSDI ENSP00000376611/1-410 VKEEKYDPGY EAAYGGAYGE NPCSSEPCGF SSNGLIESVE LRGESAFSGI ENSBTAP00000028828/1-407 VKEEKYDPGY EAAYGGAYNE NPCLGEPCGF SSNGLAAD-- -NGESTFSDI bmy_04805T0/1-387 VKEEKYDPGY EAAYGGAYSE NPCGSEPCSF SSDGLMAD-- -SGGSTFSDI BACU019597/1-474 VKEEKYDPGY EAAYGGAYSE NPCSSEPCSF SSDGLMAD-- -SGGSTFSDI 451 500 ENSTTRP00000009137/1-475 PNGQWMTQSF TDQIPSFNNH CGMQEQEEGN HA ENSP00000376611/1-410 PNGQWMTQSF TDQIPSFSNH CGTQEQEEES HA ENSBTAP00000028828/1-407 PNGQWMTQSF TDQIPSFSNH CGTQEQ-EGN HV bmy_04805T0/1-387 PNGQWMTQSF TDQIPSFNNH CXMQEQEEGN HA BACU019597/1-474 PNGQWMTQSF TDQIPSFNNH CGMQEQEEGN HA