KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:37:06 2014 Check: 00 .. Name: ENSP00000448165/1-1248 Len: 1256 Check: 8840 Weight: 1.00 Name: ENSBTAP00000028867/1-1251 Len: 1256 Check: 1043 Weight: 1.00 Name: ENSTTRP00000004494/1-1246 Len: 1256 Check: 5705 Weight: 1.00 Name: bmy_04785T0/1-767 Len: 1256 Check: 8625 Weight: 1.00 Name: BACU000942/1-1253 Len: 1256 Check: 4056 Weight: 1.00 // 1 50 ENSP00000448165/1-1248 --MDAKARNC LLQHREALEK DIKTSYIMDH MISDGFLTIS EEEKVRNEPT ENSBTAP00000028867/1-1251 GKMDAKARNC LLQHREALER DIKTSYIMDH MISNGVLTVS EEEKVKNEPT ENSTTRP00000004494/1-1246 --MDAKARNC LLQHREALER DVKTSYIMDH MISDGVLTVS EEEKVKNEPT bmy_04785T0/1-767 ---------- ---------- ---------- ---------- ---------- BACU000942/1-1253 --MDAKARNC LLQHREALER DIKTSYIMDH MISNGVLTVS EEEKVKNEPT 51 100 ENSP00000448165/1-1248 QQQRAAMLIK MILKKDNDSY VSFYNALLHE GYKDLAALLH DGIPVVSSSS ENSBTAP00000028867/1-1251 QRQRAAMLIK MILKKDNHSY ISFYNALLHE GYKDLAALLH GGIPVISSSD ENSTTRP00000004494/1-1246 QRQRAAMLIK TILEKDNYSY ISFYNALLHE GYKDLADLLH RGIPVISSSN bmy_04785T0/1-767 ---------- ---------- ---------- ---------- ---------- BACU000942/1-1253 QRQRAAMLIK TILEKDNYSY ISFYNALLHE GYKDLAYLLH GGIPVISSSN 101 150 ENSP00000448165/1-1248 GKDSVSGITS YVRTVLCEGG VPQRPVVFVT RKKLVNAIQQ KLSKLKGEPG ENSBTAP00000028867/1-1251 GKDSVSGITS YVRTVLCEGG VPQRPVVFVT RKKLVNAIQQ KLSKLNGEPG ENSTTRP00000004494/1-1246 GKDSV-GITS YVRTVLCEGG VPQRPVVFVT RRKLVNAIQQ KLFKLSGEPG bmy_04785T0/1-767 ---------- ---------- ---------- ---------- ---------- BACU000942/1-1253 GKDSV-GITS YVRTVLCEGG VPQRPVVFVT RKKLVNAIQQ KLFKLSGEPG 151 200 ENSP00000448165/1-1248 WVTIHGMAGC GKSVLAAEAV RDHSLLEGCF PGGVHWVSVG KQDKSGLLMK ENSBTAP00000028867/1-1251 WVTIYGMAGC GKSVLAAEAV RDHSFLEDCF PGGVHWVSVG KQDKSGLLMK ENSTTRP00000004494/1-1246 WVTIYGMAGC GKSVLAAEAV RDHSFLEVCF PGGVHWVSVG K-DKSGLLMK bmy_04785T0/1-767 ---------- ---------- ---------- ---------- --------MK BACU000942/1-1253 WVTIYGMAGC GKSVLAAEAV RDHSVLEVCF PGGVHWVSVG KQDKSGLLMK 201 250 ENSP00000448165/1-1248 LQNLCTRLDQ DESFSQRLPL NIEEAKDRLR ILMLRKHPRS LLILDDVWDS ENSBTAP00000028867/1-1251 LQNLCARLDQ DESFSQRLPL NIEEAKDRLR ILMLRKHPRS LLILDDIWDP ENSTTRP00000004494/1-1246 LQNLCTRLDQ DENFSQRLPL NIEEAKDRLR ILMLRKHPRS LLILDDVWDP bmy_04785T0/1-767 LQNLCTRLDQ DENFSQRLPL NIEEATDRLR ILMLRKHPRS LLILDDVWDP BACU000942/1-1253 LQNLCTRLDQ DENFSQRLPL NIEEAKDRLR ILMLRKHPRS LLILDDVWDP 251 300 ENSP00000448165/1-1248 WVLKAFDSQC QILLTTRDKS VTDSVMGPKY VVPVESSLGK EKGLEILSLF ENSBTAP00000028867/1-1251 WVLKAFDNQC QILLTTRDKS VTDSVMGPKY VVPVESGLGK EKGLEILSLF ENSTTRP00000004494/1-1246 WVLKAFDNQC QILLTTRDKS VTDSVMGPKY VVPVESGLGK EKGLEILSLF bmy_04785T0/1-767 WVLKAFDNQC QILLTTRDKS VTDSVMGPKY VVPVESGLRK EKGLEILSLF BACU000942/1-1253 WVLKAFDNQC QILLTTRDKS VTDSVTGPKY VVPVESGLRK EKGLEILSLF 301 350 ENSP00000448165/1-1248 VNMKKADLPE QAHSIIKECK GSPLVVSLIG ALLRDFPNRW EYYLKQLQNK ENSBTAP00000028867/1-1251 VNMKKADLPE QAHSIIQECK GSPLVVSLIG ALLRDFPNRW EYYLRQLQNK ENSTTRP00000004494/1-1246 VNMKKADLPE QAHSIIKECK GSPLVVSLIG ALLRDFPNRW EYYLRQLQNK bmy_04785T0/1-767 VNMKKADLPE QAHSIIKECK GSPLVVSLIG ALLRDFPNRW EYYLRQLQNK BACU000942/1-1253 VNMKKADLPE QAHSIIKECK GSPLVVSLIG ALLRDFPNRW EYYLRQLQNK 351 400 ENSP00000448165/1-1248 QFKRIRKSSS YDYEALDEAM SISVEMLRED IKDYYTDLSI LQKDVKVPTK ENSBTAP00000028867/1-1251 QFKRIRKSSS YDYEALDEAM SISVEMLRED IKDYYTDLSI LQKDVKVPTK ENSTTRP00000004494/1-1246 QFKKIRKSSS YDYEALDEAM SISVEMLRED IKDYYTDLSI LQKDVKVPTK bmy_04785T0/1-767 QFKKIRKSSS YDYEALDEAM SISVEMLRED IKDYYTDLSI LQKDVKVPTK BACU000942/1-1253 QFKKIRKSSS YDYEALDEAM SISVEMLRED IKDYYTDLSI LQKDVKVPTK 401 450 ENSP00000448165/1-1248 VLCILWDMET EEVEDILQEF VNKSLLFCDR NGKSFRYYLH DLQVDFLTEK ENSBTAP00000028867/1-1251 VLCILWDLET EEVEDILQEF VNKSLLFCDR NGKSFLYYLH DLQVDFLAEK ENSTTRP00000004494/1-1246 VLCILWDMET EEVEDILQEF VNKSLLFCDR NGKSFLYYLH DLQVDFLTQK bmy_04785T0/1-767 VLCILWDMET EEVEDILQEF VNKSLLFCDR NGKSFLYYLH D--------- BACU000942/1-1253 VLCILWDMET EEVEDILQEF VNKSLLFCDR NGKSFLYYLH DLQVDFLTEK 451 500 ENSP00000448165/1-1248 NCSQLQDLHK KIITQFQRYH QPHTLSPDQE DCMYWYNFLA YHMASAKMHK ENSBTAP00000028867/1-1251 NRSQLQDLHK KMVTQFQRHH QLYSLSPDQE DCMYWYSFLA YHMASANMHK ENSTTRP00000004494/1-1246 NHSQLQDLHK KLITQFQRHF RLHCLSPDQE DCMYWYNFLA YHMASAKMHK bmy_04785T0/1-767 ----LQDLHK KLITQFQRHY RLHCLSPDQE DCMYWYNFLA YHMASAKMHK BACU000942/1-1253 NHSQLQDLHK KLITQFQRHY RLRCLSPDQE DCMYWYNFLA YHMASAKMHK 501 550 ENSP00000448165/1-1248 ELCALMFSLD WIKAKTELVG PAHLIHEFVE YRHILDEKDC AVSENFQEFL ENSBTAP00000028867/1-1251 ELCALMFSLD WIKAKTELVG PAHLIHEFVE YRHILDEKDG IDCENFQEFL ENSTTRP00000004494/1-1246 ELCALMFSLD WIKAKTELVG PAHLIHEFVE YRHMLDEKDG TVCENFQEFL bmy_04785T0/1-767 ELCALMFSLD WIKAKTELVG PAHLIHEFVE YRHMLDEKDG TVCENFQEFL BACU000942/1-1253 ELCALMFSLD WIKAKTELVG PAHLIHEFVE YRHMLDEKDG TVCENFQEFL 551 600 ENSP00000448165/1-1248 SLNGHLLGRQ PFPNIVQLGL CEPETSEVYQ QAKLQAKQEV DNGMLYLEWI ENSBTAP00000028867/1-1251 SLNGHLLGRQ PFPNIVQLGL CELETSEVYR QAKLQAKQEV DNGMLYLEWV ENSTTRP00000004494/1-1246 SLNGHLLGRQ PFPNIVQLGL CELETSEVYQ QAKLKAKQEV DNGMLYLEWI bmy_04785T0/1-767 SLNGHLLGRQ PFPNIVQLGL CELETSEVYQ QAKLKAKQEV DNGMLYVEWI BACU000942/1-1253 SLNGHLLGRQ PFPNIVQLGL CELETSEVYQ QAKLKAKQEV DNGMLYVEWI 601 650 ENSP00000448165/1-1248 NKKNITNLSR LVVRPHTDAV YHACFSEDGQ RIASCGADKT LQVFKAETGE ENSBTAP00000028867/1-1251 NKKNMKNLSR LVVRPHTDAV YHACFSEDGQ RIASCGADKT LQVFKAETGE ENSTTRP00000004494/1-1246 NKENIKNLSR LVVRPHTDAV YHACFSEDGQ RIASCGADKN LQVFKAETGE bmy_04785T0/1-767 NKENIKNLSR LVVRPHTDAV YHACFSEDGQ RIASCGADKN LQVFKAETGE BACU000942/1-1253 NKENIKNLSH LVVRPHTDAV YHACFSEDGQ RIASCGADKN LQVFKAETGE 651 700 ENSP00000448165/1-1248 KLLEIKAHED EVLCCAFSTD DRFIATCSVD KKVKIWNSMT GELVHTYDEH ENSBTAP00000028867/1-1251 KLLEIKAHED EVLCCAFSAD DKFIATCSVD KKVKIWNSMT GELVRIYDEH ENSTTRP00000004494/1-1246 KLLEIKAHED EVLCCAFSAD DRFIATCSVD KKVKVWNSMS GELVHTYDEH bmy_04785T0/1-767 KLLEIKAHED EVLCCAFSAD DRFIATCSVD KKVKIWNSVS GELVHTYDEH BACU000942/1-1253 KLLEIQAHED EVLCCAFSAD DRFIATCSVD KKVKIWNSMS GELVHTYDEH 701 750 ENSP00000448165/1-1248 SEQVNCCHFT NSSHHLLLAT GSSDCFLKLW DLNQKECRNT MFGHTNSVNH ENSBTAP00000028867/1-1251 SEQVNCCHFT NNSNHLLLAT GSNDYFLKLW DLNQEECRNT MFGHTNSVSH ENSTTRP00000004494/1-1246 SEQVNCCHFT NNSNHLLLAT GSNDCFLKLW ALNQKECRNT MFGHTNSVNH bmy_04785T0/1-767 SEQVNCCHFT NNSNHLLLAT GSNDCFLKLW ALNQKECRNT MFGHTDSVNH BACU000942/1-1253 SEQVNCCHFT NNSNHLLLAT GSNDCFLKLW ALNQKECRNT MFGHTDSVNH 751 800 ENSP00000448165/1-1248 CRFSPDDKLL ASCSADGTLK LWDATSANER KSINVKQFFL NLEDPQEDME ENSBTAP00000028867/1-1251 CRFSPDDQVL ASCSADGTLK LWDVKSANER KSINVKQFFL NSEEPQEDLE ENSTTRP00000004494/1-1246 CRFSPDDKLL ASCSADGTLK LWDVKSANER KSINVKQFFL NSEEPHEDME bmy_04785T0/1-767 CRFSPDDKLL ASCSADGTLK LWDVKSANER KSINVKQFFL NSEEPQEDME BACU000942/1-1253 CRFSPDDKLL ASCSADGTLK LWDVKSANER KSINVKQFFL NSEEPQEDME 801 850 ENSP00000448165/1-1248 VIVKCCSWSA DGARIMVAAK NKIFLFDIHT SGLLGEIHTG HHSTIQYCDF ENSBTAP00000028867/1-1251 VIVKCCSWSA DGAKIMVAAK NKVFLFDIHS SGLLAEMHMG HHSAVQYCDF ENSTTRP00000004494/1-1246 VIVKCCSWSA DGARIMVAAK NKVFLFDIHT SGLLAEIHTG HHSTVQYCDF bmy_04785T0/1-767 VIVKCCSWSA DGARIMVAAK NKVFLFDIHT SGLLAEIHTG HHSTVQYCDF BACU000942/1-1253 VIVKCCSWSA DGARIMVAAK NKVFLFDIHT SGLLAEIHTG HHSTVQYCDF 851 900 ENSP00000448165/1-1248 SPQNHLAVVA LSQYCVELWN TDSRSKVADC RGHLSWVHGV MFSPDGSSFL ENSBTAP00000028867/1-1251 SPHNHLAVVA LSQYCVELWS MDSGLKVADC RGHLSWVHCV MFSPDGSSFL ENSTTRP00000004494/1-1246 SPHNHLAVVA LPQYCVEXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_04785T0/1-767 SPHNHLAVVA LPXYCVE--- ---------- ---------- ---------- BACU000942/1-1253 SPHNHLAVVA LPQYCVEVWN MDSCLKVADC RGHLSWVHCV MFSPDGSSFL 901 950 ENSP00000448165/1-1248 TSSDDQTIRL WETKKVCKNS AVMLKQEVDV VFQENEVMVL AVDHIRRLQL ENSBTAP00000028867/1-1251 TSSDDQTIRL WETKKVCKNS ATVLKQEIDV VFQENEVTVL AVDNIRRLQL ENSTTRP00000004494/1-1246 XXXXXXXXXL WETKKVCKNS AVALKQEIDV VFQENEVMVL AVDDIKRLQL bmy_04785T0/1-767 ---------L WETKKVCKNS AIALKQEIDV VFQENEVMVL AVDBIKRLQL BACU000942/1-1253 TSSDDQTIRL WKTKKVCKNS AIALKQEIDV VFQENEVMVL AVDDIKRLQL 951 1000 ENSP00000448165/1-1248 INGRTGQIDY LTEAQVSCCC LSPHLQYIAF GDENGAIEIL ELVNNRIF-- ENSBTAP00000028867/1-1251 INGNTGQIDY LTEAQVSCCC LSPHLQYLAF GGEDGAIQIL ELLNNRIF-- ENSTTRP00000004494/1-1246 INGNTGQIDY LTEAQVSCCC LSPQLQYLAF GGEDGAIQIL ELLNNRIF-- bmy_04785T0/1-767 INGNTGQIDY LTEAQ----- ---------- --------IL ELLNNRIF-- BACU000942/1-1253 INGNTGQIEY LTEAQVSCCC LSPHLQYLAF GGEDGAIRIL ELLNNRIFXX 1001 1050 ENSP00000448165/1-1248 ---QSRFQHK KTVWHIQFTA DEKTLISSSD DAEIQVWNWQ LDKCIFLRGH ENSBTAP00000028867/1-1251 ---QSRNGHK TTVRHIQFTA DGKTLISSSD DSAVQIWNWQ SEDPFFLQAH ENSTTRP00000004494/1-1246 ---QSRIGHK NTVRHIQFTA DAKTLISSSD DSAIQVWNWQ SEEYVFLQAH bmy_04785T0/1-767 ---RSRIGHK NTVRHMQFTA DAKTLISSSD DSAVQI---- ---------- BACU000942/1-1253 XXXRSRIGHK NTVRHMQFTA DTKTLISSSD DSAVQVWNWQ SEEYVFLQAH 1051 1100 ENSP00000448165/1-1248 QETVKDFRLL KNSRLLSWSF DGTVKVWNII TGNKEKDFVC HQGTVLSCDI ENSBTAP00000028867/1-1251 QETVKDFRLL KNSRLLSWSF DGTVKVWNII TRRIEKDFVC HQDTVLSCDI ENSTTRP00000004494/1-1246 QETVKDFKLL KNSRLLSWSF DGTVKVWNII TGRIEKDFVC HQDTVLSCDI bmy_04785T0/1-767 ---------- ---------- ---------- ---------- ---------- BACU000942/1-1253 QETVKDFRLL ENSRLLSWSF DGTVKVWNII TGRTEKDFVC HQDTVLSCDI 1101 1150 ENSP00000448165/1-1248 SHDATKFSST SADKTAKIWS FDLLLPLHEL RGHNGCVRCS AFSVDSTLLA ENSBTAP00000028867/1-1251 SSDATKFSST SADKTAKIWS FELLSPLHEL RGHKGCVRCS SFSVNNTLLA ENSTTRP00000004494/1-1246 SPDATKYSST SADKTAKIWS FELLSPLHEL RGHKGCVRCS AFSVDSSLLA bmy_04785T0/1-767 ---------- ---------- ---------- ---------- ---------- BACU000942/1-1253 SPDATKFSST SADKTAKIWS FELLSPLHEL RGHKGCVRCS AFSVDSTLLA 1151 1200 ENSP00000448165/1-1248 TGDDNGEIRI WNVSNGELLH LCAPLS-EEG AATHGGWVTD LCFSPDGKML ENSBTAP00000028867/1-1251 TGDDNGEIRI WNVSNGELLH LCAPISVEEG AATHGGWVTD LCFSPDTKML ENSTTRP00000004494/1-1246 TGDDNGEIRX XXXXXXXXXX XXXXXX-XXX XXXXXXXXXX XXXXXXXXXX bmy_04785T0/1-767 ---------- --------MH M--------- ---------- ---------- BACU000942/1-1253 TGDDNGEIRI WNVSNGELLH LFAPISVEEG AATHGGWVTD LCFSPDSKML 1201 1250 ENSP00000448165/1-1248 ISAGGYIKWW NVVTGESSQT FYTNGTNLKK IHVSPDFKTY VTVDNLGILY ENSBTAP00000028867/1-1251 VSAGGYLKWW NVVTGESSQT FYTNGTNLKK IHVSPDFKTY VTVDNLGILY ENSTTRP00000004494/1-1246 XXXXXXXXWW NVVTGESSQT FYTNGTNLKK IHVSPDFKTY VTVDNLGILY bmy_04785T0/1-767 ---------- ---------- ----GINETR IFL------- ---------- BACU000942/1-1253 VSAGGYLKWW NVVTGESSQT FYTNGTNLKK IHVSPDFKTY VTVDNLGILY 1251 1300 ENSP00000448165/1-1248 ILQTLE ENSBTAP00000028867/1-1251 ILKILE ENSTTRP00000004494/1-1246 ILKILE bmy_04785T0/1-767 ------ BACU000942/1-1253 ILKILE