KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:37:10 2014 Check: 00 .. Name: ENSP00000237536/1-1661 Len: 1669 Check: 2506 Weight: 1.00 Name: ENSBTAP00000028879/1-1427 Len: 1669 Check: 3862 Weight: 1.00 Name: bmy_09290T0/1-1362 Len: 1669 Check: 5030 Weight: 1.00 Name: ENSTTRP00000005816/1-1659 Len: 1669 Check: 1853 Weight: 1.00 // 1 50 ENSP00000237536/1-1661 MEAPAAEPPV RGCGPQPAPA PAPAPERKKS HRAPSPARPK DVAGWSLAKG ENSBTAP00000028879/1-1427 ---------- ---------- ---------- ---------- ---------- bmy_09290T0/1-1362 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000005816/1-1659 MEVPAGESPA RGCGP----P PAPAPERKKS HRAPSPARPK DVAGWSLAKG 51 100 ENSP00000237536/1-1661 RRGPGPGSAV ACSAAFSSRP DKKGRAVAPG ARGAGVRVAG VRTGVRAKGR ENSBTAP00000028879/1-1427 ---------- ---------- ---------- ---------- ---------- bmy_09290T0/1-1362 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000005816/1-1659 RRGPGPGSAA ACSAASSARP DKKGRAVASG TRGSWTRVAG VRTGVRAKGR 101 150 ENSP00000237536/1-1661 PRSGAGPRPP PPPPSLTDSS SEVSDCASEE ARLLGLELAL SSDAESAAGG ENSBTAP00000028879/1-1427 ---------- ---------- ---------- ---------- ---------- bmy_09290T0/1-1362 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000005816/1-1659 PRPGTGPRPP PPPPSLTDSS SEVSDCASEE ARLLGQDLAL SSDAESAAGG 151 200 ENSP00000237536/1-1661 PAGVRTGQPA QPAPSAQQPP RPPASPDEPS VAASSVGSSR LPLSASLAFS ENSBTAP00000028879/1-1427 ---------- ---------- ---------- ---------- ---------- bmy_09290T0/1-1362 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000005816/1-1659 PAGACTGL-F QPAPSAQLPP RLPASSEDSS VAASSVGSIR LPFSASLVFS 201 250 ENSP00000237536/1-1661 DLTEEMLDCG PSGLVRELEE LRSENDYLKD EIEELRAEML EMRDVYMEED ENSBTAP00000028879/1-1427 ---------- ---------- ---------- --------ML EMRDVYMEED bmy_09290T0/1-1362 ---------- ---------- ---------- --------ML EMRDVYMEED ENSTTRP00000005816/1-1659 DLSDEMLDCG PGGFVRELEE LRSENDYLKD EIEELRAEML EMRDVYMEED 251 300 ENSP00000237536/1-1661 VYQLQELRQQ LDQASKTCRI LQYRLRKAER RSLRAAQTGQ VDGELIRGLE ENSBTAP00000028879/1-1427 VYQLQELRQQ LDQASKTCRI LQYRLRKAER RSLRAAQTGQ VDGELIRGLE bmy_09290T0/1-1362 VYQLQELRQQ LDQASKTCRI LQYRLRKAER RSLRAAQTGQ ---------- ENSTTRP00000005816/1-1659 VYQLQELRQQ LDQASKTCRI LQYRLRKAER RSLRAAQTGQ VDGELIRGLE 301 350 ENSP00000237536/1-1661 QDVKVSKDIS MRLHKELEVV EKKRARLEEE NEELRQRLIE TELAKQVLQT ENSBTAP00000028879/1-1427 QDVKVSKDIS VRLHKELEAV EKKRARLEEE NEELRQRLIE TELAKQVLQT bmy_09290T0/1-1362 ----VSKDIS VRLHKELEAV EKKRARLEEE NEELRQRLIE TELAKQVLQT ENSTTRP00000005816/1-1659 QDVKVSKDIS VRLHKELEAV EKKRARLEEE NEELRQRLIE TELAKQVLQT 351 400 ENSP00000237536/1-1661 ELERPREHSL KKRGTRSLGK ADKKTLVQED SADLKCQLHF AKEESALMCK ENSBTAP00000028879/1-1427 ELERPREHSL KKRGTRSLGK TDKKSSVQED SADLKCQLHF AKEESALMCK bmy_09290T0/1-1362 ELERPREHSL KKRGTRSLGK TDKKPSMQED SADLKCQLHF AKEESALMCK ENSTTRP00000005816/1-1659 ELERPREHSL KKRGTRSLGK TDKKPSMQED SADLKCQLHF AKEESALMCK 401 450 ENSP00000237536/1-1661 KLTKLAKEND SMKEELLKYR SLYGDLDSAL SAEELADAPH SRETELKVHL ENSBTAP00000028879/1-1427 KLTKLAKEND GMKEELLKYR SLYGDLDGAL SAEELADAPH SRETELKVHL bmy_09290T0/1-1362 KLTKLAKEND SMKEELLKYR SFYGDLDGAL SAEELADAPH SRETELKVHL ENSTTRP00000005816/1-1659 KLTKLAKEND SMKEELLKYR SLYGDLDGAL SAEELADAPH SRETELKVHL 451 500 ENSP00000237536/1-1661 KLVEEEANLL SRRIVELEVE NRGLRAEMDD MKDH--GGGC GGPEARLAFS ENSBTAP00000028879/1-1427 KLVEEEANLL SRRIVELEVE NRGLRAEMDD MKDHGGGGGC GGPEARLAFS bmy_09290T0/1-1362 KLVEEEANLL SRRIVELEVE NRGLRAEMDD MKDH--GGGC GGPETRLAFS ENSTTRP00000005816/1-1659 KLVEEEANLL SRRIVELEVE NRGLRAEMDD MKDH--GGGC GGPEARLAFS 501 550 ENSP00000237536/1-1661 ALGG--GECG ESLAELRRHL QFVEEEAELL RRSSAELEDQ NKLLLNELAK ENSBTAP00000028879/1-1427 ALGG--GECG ESLVELRRHL QFVEEEAELL RRSSAELEDQ NKLLLSELAK bmy_09290T0/1-1362 ALGG-GGECG ESLAELRRHL QFVEEEAELL RRSSAELEDQ NKLLLSELAK ENSTTRP00000005816/1-1659 ALGGSGGECG ESLAELRRHL QFVEEEAELL RRSSAELEDQ NKLLLSELAK 551 600 ENSP00000237536/1-1661 FRSEHELDVA LSEDSCSVLS EPSQEELAAA KLQIGELSGK VKKLQYENRV ENSBTAP00000028879/1-1427 YRSEHELDVT LSEDSCSVLS EPSQEELAAA KLQIGELSGK VKKLQYENRV bmy_09290T0/1-1362 YRSEHELDVT LSEDSCSVLS EPSQEELAAA KLQIGELSGK VKKLQYENRV ENSTTRP00000005816/1-1659 YRSEHELDVT LSEDSCSVLS EPSQEELAAA KLQIGELSGK VKKLQYENRV 601 650 ENSP00000237536/1-1661 LLSNLQRCDL ASCQSTRPML ETDAEAGDSA QCVPAPLGET HESHAVRLCR ENSBTAP00000028879/1-1427 LLSNLQRCDL ASCQSTRPML ETDAEAGDSA QCVPASLAEA PGPAAARLCR bmy_09290T0/1-1362 LLSNLQRCDL ASCQSTRPML ETDAEAGDSA QCVPAALGEA HGPHTARLCR ENSTTRP00000005816/1-1659 LLSNLQRCDL ASCQSTRPML ETDAEAGDSA QCVPAALGEA HGPHTARLCR 651 700 ENSP00000237536/1-1661 AREAEVLPGL REQAALVSKA IDVLVADANG FTAGLRLCLD NECADFRLHE ENSBTAP00000028879/1-1427 AREAEALPGL REQAVLVSKA IDVLVADANG FSAGLRPYLD NECADFRLHE bmy_09290T0/1-1362 AREAEALPGL REQAVLVSKA IDVLVADANG FTAGLRPYLD NECADFRLHE ENSTTRP00000005816/1-1659 AREAEALPGL REQAVLVSKA IDVLVADANG FTAGLRPYLD NECADFRLHE 701 750 ENSP00000237536/1-1661 APD-NSEGPR DTKLIHAILV RLSVLQQELN AFTRKADAVL GCSVKEQQES ENSBTAP00000028879/1-1427 APDNNSEGPR DTKLMHALLV RLSLLQQELN AFTRKADSVL GGPVKEPPEP bmy_09290T0/1-1362 APDNNSEGPR DTKLIHALLV RLSLLQQELQ AFTRKADSVL GGPSKEQPEP ENSTTRP00000005816/1-1659 APGNNSEGPR DTKLIHALLV RLSLLQQELH AFTRKADSVL GDPNKEQPEP 751 800 ENSP00000237536/1-1661 FSSLPPLGSQ GLSKEILLAK DLGSDF--QP PDFRDLPEWE PRIREAFRTG ENSBTAP00000028879/1-1427 FSTLPALSSQ GPSKEILLAK DLGSDF--QP PDLRDLPEWE PRIREAFHTS bmy_09290T0/1-1362 FSTLPALGSQ GPSKEILLAK DLGSDFQVQP PDLRDLPEWE PRIREAFRSG ENSTTRP00000005816/1-1659 FSTLPALGSQ GPSKEILLAK DLGSDF--QP PDLRDLPEWE PRIREAFRSG 801 850 ENSP00000237536/1-1661 DLDSKPDPSR SFRPYRAEDN DSYASEIKEL QLVLAEAHDS LRGLQEQLSQ ENSBTAP00000028879/1-1427 DLDSKSDPSR SFRPYRAEDN DSYASEIKEL QLVLAEAHDS LRGLQEQLSQ bmy_09290T0/1-1362 DLDSKPDPSR SFRPYRAEDN DSYASEIKEL QLVLAEAHDS LRGLQEQLSQ ENSTTRP00000005816/1-1659 DLDSKPDPSR SFRPYRAEDS DSYASEIKEL QLVLAEAHDS LRGLQEQLSQ 851 900 ENSP00000237536/1-1661 ERQLRKEEAD NFNQKMVQLK EDQQRALLRR EFELQSLSLQ RRLEQKFWSQ ENSBTAP00000028879/1-1427 ERQLRKEEAE SFNQKVVQLK EDQQRALLRR EFELQSLSLQ RRLEQKFWSQ bmy_09290T0/1-1362 ERQLRKEEAE NFNQKMVQLK EDQQRALLRR EFELQSLSLQ RRLEQKFWSQ ENSTTRP00000005816/1-1659 ERQLRKEEAE NFNQKVVQLK EDQQRALLRR EFELQSLSLQ RRLEQKFWSQ 901 950 ENSP00000237536/1-1661 EKNMLVQESQ QFKHNFLLLF MKLRWFLKRW RQGKVLPSEG DDFLEVNSMK ENSBTAP00000028879/1-1427 EKNMLVQESQ QFKHNFLLLF MKLRWFLKRW RQGKVLPSEG DDFLEVNSMK bmy_09290T0/1-1362 EKNMLVQESQ QFKHNFLLLF MKLRWFLKRW RQGKVLPSEG DDFLE----- ENSTTRP00000005816/1-1659 EKNMLVQESQ QFKHNFLLLF MKLRWFLKRW RQGKVLPSEG DDFLEVNSMK 951 1000 ENSP00000237536/1-1661 ELYLLMEEEE INAQHSDNKA CTGDSWTQNT PNEYIKTLAD MKVTLKELCW ENSBTAP00000028879/1-1427 ELYLLMEEEE LNAQHSDNKT CAGDSWTQNT PNEYIKTLAD MKVTLKELCW bmy_09290T0/1-1362 ---------- ---------- ---------- PNEYIKTLAD MKVTLKELCW ENSTTRP00000005816/1-1659 ELYLLMEEEE LNAQHSDNKT CTGDSWTQNT PNEYIKTLAD MKVTLKELCW 1001 1050 ENSP00000237536/1-1661 LLRDERRGLT ELQQQFAKAK ATWETERAEL KGHTSQMELK TGKGAGERAG ENSBTAP00000028879/1-1427 LLRDERRGLT ELQQQFAKAK ATWETERVEL KSHTALMELK AGKGAGDRTG bmy_09290T0/1-1362 LLQDERRGLT ELQQQFAKAK ATWETERAEL KSHTALMELK AGKGAGDRMG ENSTTRP00000005816/1-1659 LLRDERRGLT ELQQQFAKAK ATWETERAEL KSHTALMELK AGKGAGDRIG 1051 1100 ENSP00000237536/1-1661 PDWKAALQRE REEQQHLLAE SYSAVMELTR QLQISERNWS QEKLQLVERL ENSBTAP00000028879/1-1427 PDWKAALQRE REEQQHLLAE SYSAVMELTR QLQISEHNWA QEKLQLVERL bmy_09290T0/1-1362 PDWKAALQRE REEQQQLLAE SYSAVMELTR QLQIK----- ---------- ENSTTRP00000005816/1-1659 PDWKAALQRE REEQQHLLAE SYSAVMELTR QLQISEHNWG QEKLQLVERL 1101 1150 ENSP00000237536/1-1661 QGEKQQVEQQ VKELQNRLSQ LQKAADPWVL KHSELEKQDN SWKETRSEKI ENSBTAP00000028879/1-1427 QGEKQQVEQQ LKELQNRLSQ LQKASDPWVL KHSDLEKQDN SWKETRSEKI bmy_09290T0/1-1362 QGPAHHLCLH MTIFFT-LAQ LQKAADPWVL KHSDLEKQDN SWKETHSEKI ENSTTRP00000005816/1-1659 QGEKQQVEQQ VKELQNRLSQ LQKAADPWVL KHSDLEKQDN SWKETHSEKI 1151 1200 ENSP00000237536/1-1661 HDKEAVSEVE LGGNGLKRTK SVSSMSEFES LLDCSPYLAG GDARGKKLPN ENSBTAP00000028879/1-1427 HDKEAVSEAE LGGTGLKRTK SVSSMSEFES LLDCSPYLAG EASRGKKLPN bmy_09290T0/1-1362 HNKEAVSEAE LGGTGLKRTK SVSSMSEFES LLDCSPYLAG EAARGKKLPN ENSTTRP00000005816/1-1659 HNKEAVSEAE LGGTGLKRTK SVSSMSEFES LLDCSPYLAG EAARGKKLPN 1201 1250 ENSP00000237536/1-1661 NPAFGFVSSE PGDPEKDTKE KPGLSSRDCN HLGALACQDP PGRQMQRSYT ENSBTAP00000028879/1-1427 SPAFAFVGAQ PVDPEKGAPE QPGLSPRDCN RLGALGCPEP AGRQMQRSYT bmy_09290T0/1-1362 SPAFAFVGPQ PVDPEKAAPE QPGLSPRDCN RLGALGCQEP AGRQMQRSYT ENSTTRP00000005816/1-1659 SPAFAFVGPQ PVDPEKAAPE QPGLSPRDCN RLGALGCQEP AGRQMQRSYT 1251 1300 ENSP00000237536/1-1661 APDKTGIRVY YSPPVARRLG VPVVHDKEGK IIIEPGFLFT TAKPKESAEA ENSBTAP00000028879/1-1427 APDKTGIRVY YSPPVARRLG VPVVHDREGK IIIEPGFLFT TAKPKESAEA bmy_09290T0/1-1362 APDKTGIRVY YSPPVARRLG VPVVHDREGK IIIEPGFLFT TAKPKESAEA ENSTTRP00000005816/1-1659 APDKTGIRVY YSPPVARRLG VPVVHDREGK IIIEPGFLFT TAKPKESAEE 1301 1350 ENSP00000237536/1-1661 DGLAESSYGR WLCNFSRQRL DGGSAGSPSA AGPGFPAALH DFEMSGNMSD ENSBTAP00000028879/1-1427 DGLAESSYSR WLCNFSRQRL DGGSGGGPSA AGPGFPAALH DFEMSGNMSD bmy_09290T0/1-1362 DGLAESSYSR WLCNFSRQRL DGGSGGGPSA AGPGFPAALH DFEMSGNMSD ENSTTRP00000005816/1-1659 DGLAESSYSR WLCNFSRQRL DGGSGGGPSA AGPGFPAALH DFEMSGNMSD 1351 1400 ENSP00000237536/1-1661 DMKEITNCVR QAMRSGSLER KVKSTSSQTV GLASVGTQTI RTVSVGLQTD ENSBTAP00000028879/1-1427 DMKEITNCVR QAMRSGSLER KVKSTSSQTV GVASVGTQTI RTVSVGLQTD bmy_09290T0/1-1362 DMKEITNCVR QAMRSGSLER KVKSTSSQTV GLASVGTQTT RTVSVGLQTD ENSTTRP00000005816/1-1659 DMKEITNCVR QAMRSGSLER KVKSTSSQTV GLASVGTQTI RTVSVGLQTD 1401 1450 ENSP00000237536/1-1661 PPRSSLHGKA WSPRSSSLVS VRSKQISSSL DKVHSRIERP CCSPKYGSPK ENSBTAP00000028879/1-1427 PPRGSLHGKS WSPRGSSLVS VRSKQISSSL DKVHARIERP CCSPKYGSPK bmy_09290T0/1-1362 PPRSSLHGKS WSPRSSSLVS VRSKQISSSL DKVHSRIERP CCSPKYGSPK ENSTTRP00000005816/1-1659 PPRSSLHGKS WSPRSSSLVS VRSKQISSSL DKVHSRIERP CCSPKYGSPK 1451 1500 ENSP00000237536/1-1661 LQRRSVSKLD SSKDRSLWNL HQGKQNGSAW ARSTTTRDSP VLRNINDGLS ENSBTAP00000028879/1-1427 LQRRSVSKLD GAKDRSLWNL HQGKQNGSAW ARSTTTRDSP VLRNINDGLS bmy_09290T0/1-1362 LQRRSVSKLD GAKDRSLWNL HQGKQNGSAW ARSTTTRDSP VLRNINDGLS ENSTTRP00000005816/1-1659 LQRRSVSKLD GAKDRSLWNL HQGKQNGSAW ARSTTTRDSP VLRNINDGLS 1501 1550 ENSP00000237536/1-1661 SLFSVVEHSG STESVWKLGM SETRAKPEPP KYGIVQEFFR NVCGRAPSPT ENSBTAP00000028879/1-1427 SLFSVVEHSG STESVWKVGM SEARAKPEPP KYGIVQEFFR NVCGRAPSPT bmy_09290T0/1-1362 SLFSVVEHSG STESVWKLGV SEARAKPEPP KYGIVQEFFR NVCGRVPSPT ENSTTRP00000005816/1-1659 SLFSVVEHSG STESVWKLGV SEARAKPEPP KYGIVQEFFR NVCGRAPSPT 1551 1600 ENSP00000237536/1-1661 -SSAGEEGTK KPEPLSPASY HQPEGVARIL NKKAAKLGSS EEVRLTMLPQ ENSBTAP00000028879/1-1427 ASTAGEEGSK KPEPLSPASY HQPEGMARIL NKKVGKSGGS EEARLSVLPQ bmy_09290T0/1-1362 -SIPGEEGXK KLEPISPASY HQPEGMARIL NKKAAKSGGS EEARLSMLPQ ENSTTRP00000005816/1-1659 -SVPGEEGAK KLEPISPASY HQPEGMARIL NKKAAKSGGS EEARLSMLPQ 1601 1650 ENSP00000237536/1-1661 VGKDGVLRDG DGAVVLPNED AVCDCSTQSL TSCFARSSRS AIRHSPSKCR ENSBTAP00000028879/1-1427 VGKDGITRDG DGATVLPNED AVCDCSTQSL ASCFARPSRS AIRHSPSKCR bmy_09290T0/1-1362 MGKDGVPRDG DGATVLPNED AVCDCSTQSL ASCFARPSRS AVRHSPSKCR ENSTTRP00000005816/1-1659 MGKDGVPRDG DGATVLPNED AVCDCSTQSL ASCFARPSRS AVRHSPSKCR 1651 1700 ENSP00000237536/1-1661 LHPSESSWGG EERALPPSE ENSBTAP00000028879/1-1427 LHPSESGWGG EERAAPPSE bmy_09290T0/1-1362 LHPSECAWGG EERAAPPSE ENSTTRP00000005816/1-1659 LHPSECAWGG EERAAPPSE