KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:37:12 2014 Check: 00 .. Name: ENSP00000298048/1-651 Len: 666 Check: 7321 Weight: 1.00 Name: ENSTTRP00000005713/1-650 Len: 666 Check: 5186 Weight: 1.00 Name: ENSBTAP00000028900/1-650 Len: 666 Check: 8762 Weight: 1.00 Name: bmy_02854T0/1-508 Len: 666 Check: 9777 Weight: 1.00 Name: BACU017539/1-632 Len: 666 Check: 8405 Weight: 1.00 // 1 50 ENSP00000298048/1-651 MKDYDELLKY YELHETIGTG GFAKVKLACH ILTGEMVAIK IMDKNTLGSD ENSTTRP00000005713/1-650 MKDYDELLKY YELYETVGTG GFAKVKLAFH ILTGELVAIK IMDKNALGSD ENSBTAP00000028900/1-650 MKDYDELLKY YELYETIGTG GFAKVKLACH ILTGEMVAIK IMDKNALGSD bmy_02854T0/1-508 MKDYDELLKY YELYETVGTG GFAKVKLAFH ILTGEMVAIK IMDKNALG-- BACU017539/1-632 MKDYDELLKY YELYETVGTG GFAKVKLAFH ILTGEMVAIK IMDKNALGSD 51 100 ENSP00000298048/1-651 LPRIKTEIEA LKNLRHQHIC QLYHVLETAN KIFMVLEYCP GGELFDYIIS ENSTTRP00000005713/1-650 LPRVKTEIDA LKNLRHQHIC QLYHVIETAN KIFMVLEYCP GGELFDYIIS ENSBTAP00000028900/1-650 LPRVKTEIDA LKNLRHQHIC QLYHVIETAN KIFMVLEYCP GGELFDYIIS bmy_02854T0/1-508 ---------- ---------- ---------- ---------- ---------- BACU017539/1-632 LPRVKTEIDA LKNLRHQHIC QLYHVIETAN KIFMVLEYCP GGELFDYIIS 101 150 ENSP00000298048/1-651 QDRLSEEETR VVFRQIVSAV AYVHSQGYAH RDLKPENLLF DEYHKLKLID ENSTTRP00000005713/1-650 QDRLSEEETR VVFRQIVSAV AYVHSQGFAH RDLKPENLLF DEDHKLKLID ENSBTAP00000028900/1-650 HDRLSEEETR IVFRQIVSAV AYVHSQGYAH RDLKPENLLF DEYHKLKLID bmy_02854T0/1-508 -DRLSEEETR VVFRQIVSAV AYVHSQGFAH RDLKPENLLF DEDHKLKLID BACU017539/1-632 QDRLSEEETR VVFRQIVSAV AYVHSQGFAH RDLKPENLLF DEDHKLKLID 151 200 ENSP00000298048/1-651 FGLCAKPKGN KDYHLQTCCG SLAYAAPELI QGKSYLGSEA DVWSMGILLY ENSTTRP00000005713/1-650 FGLCAKPKGN KDYHLQTCCG SLAYAAPELI QGKSYLGSEA DVWSMGILLY ENSBTAP00000028900/1-650 FGLCAKPKGN KDYHLQTCCG SLAYAAPELI QGKSYLGSEA DVWSMGILLY bmy_02854T0/1-508 FGLCAKPKGN KDYHLQTCCG SLAYAAPELI QGKSYLGSE- ---------- BACU017539/1-632 FGLCAKPKGN KDYHLQTCCG SLAYAAPELI QGKSYLGSEA DVWSMGILLY 201 250 ENSP00000298048/1-651 VLMCGFLPFD DDNVMALYKK IMRGKYDVPK WLSPSSILLL QQMLQVDPKK ENSTTRP00000005713/1-650 VLMCGFLPFD DDNVMALYKK IMRGKYEVPK WLSPSSILLL QQMLQVDPKK ENSBTAP00000028900/1-650 VLMCGFLPFD DDNVMALYKK IMKGQYDVPK WLSPSSVLLL QQMLQVDPKK bmy_02854T0/1-508 ---------- ---------- ---------- ---------- ---------- BACU017539/1-632 VLMCGFLPFD DDNVMALYKK IMRGKYEVPK WLSPRSILLL QQMLQ----- 251 300 ENSP00000298048/1-651 RISMKNLLNH PWIMQDYNYP VEWQSKNPFI HLDDDCVTEL SVHHRNNRQT ENSTTRP00000005713/1-650 RISVKNLLNH PWIMQDYNCP VEWQSKTPLI HLDEDCVTEL SVYHRNNRQT ENSBTAP00000028900/1-650 RIAMRNLLNH PWIMHDYNCP VEWQSNAPLI HLDEDCVTEL SVHHRNNRQT bmy_02854T0/1-508 ---------- ---------- --------LI HLDEDCVTEL SVYHRNNRQT BACU017539/1-632 ---------- ---------- --------LI HLDEDCVTEL SVYHRNNRQT 301 350 ENSP00000298048/1-651 MEDLISLWQY DHLTATYLLL LAKKARGKPV RLRLSSFSCG QASATPFTDI ENSTTRP00000005713/1-650 MEDLISLWQY DHLTATYLLL LAKKARGKPV RLRLLS-SCG QANSTAVTNI ENSBTAP00000028900/1-650 MEDLISLWQY DHLTATYLLL LAKKARGRPV RLRLLS-SYG QASSTPVTNI bmy_02854T0/1-508 MEDLISLWQY DHLTATYLLL LAKKARGKPV RLRLLS-SCG QANSTAVTNI BACU017539/1-632 MEDLISLWQY DHLTATYLLL LAKKARGKPV RLRLLS-SCG QANSTAVTNI 351 400 ENSP00000298048/1-651 KSNNWSLEDV TASDKNYVAG LIDYDWCEDD LSTGAATPRT SQFTKYWTES ENSTTRP00000005713/1-650 KSKNLSLEDV IASDENYVAG LIDYEWCEDI SSTGVATPQT PQFAKHWTES ENSBTAP00000028900/1-650 KSKNLSLEDM ITSDENYVTG LMSYEWCEDI SSRGVATPQT PQVAKHWTES bmy_02854T0/1-508 KSKNLSLEDV IASDENYVAG LIDYEWCEDI SSTAVATPQT PQFAKYWTES BACU017539/1-632 KSKNLSLEDV VASDENYVAG LIDYEWCEDI SSTGVATPQT PQFAKHWTES 401 450 ENSP00000298048/1-651 NGVESKSLTP ALCRTPANKL KNKENVYTPK SAVKNEEYFM FPEPKTPVNK ENSTTRP00000005713/1-650 NGLESKSLTP VLCTASVNKL KNKENVYTPK SAVKNDECFS FPEPKTPVNK ENSBTAP00000028900/1-650 NDLESTSLTP VLCRASANKL KNKENVYTPK SAVKNEECFV FPEPKTPVNK bmy_02854T0/1-508 NGLESKSLTP VLCTASANKL KNKENIYTPK SAVKNDECFS FPEPKTPVNK BACU017539/1-632 NGLESKSLTP VLCTASASKL KNKENVYTPK SAVKNDECFS FPEPKTPVNK 451 500 ENSP00000298048/1-651 NQHKREILTT PNRYTTPSKA RNQCLKETPI KIPVNSTG-- ---------- ENSTTRP00000005713/1-650 NQHKREILTT PNHYSTPSKX XXXXXXXXXX XXXXXXXX-- ---------- ENSBTAP00000028900/1-650 NQYKREILTT PNHYSTPSKA GNQFLKETPI KMPVNSTG-- ---------- bmy_02854T0/1-508 NQDKREILTT PNHYSTPSKA RNQCLKETPV KMPVNSAG-- ---------- BACU017539/1-632 NQHKREILTT PNHYSTPSKA RNQCLKDTPV KMPVNSAGXX XXXXXXXXXX 501 550 ENSP00000298048/1-651 ---TDKLMTG VISPERRCRS VELDLNQAHM EETPKRKGAK VFGSLERGLD ENSTTRP00000005713/1-650 ---XXXXXXX XXXXXXXCRS VELNLNQVHV EDTPKRKGTK VFGSLEKGLD ENSBTAP00000028900/1-650 ---TEKLLTG VISPERRCRS VELNLNQVHV EETPKRKGTK VFGSLEKGLD bmy_02854T0/1-508 ---TEKLITG VISPERRCRS VELNLNQVHV EDTPKRKGTK VFGSLEKGLD BACU017539/1-632 XXXTEKLITG VISPERRCRS VELNLNQVHV ENTPKRKGTK VFGSLEKGLD 551 600 ENSP00000298048/1-651 KVITVLTRSK RKGSARDGPR RLKLHYNVTT TRLVNPDQLL NEIMSILPKK ENSTTRP00000005713/1-650 KVITVLTRSK RKGSAKDGPR KLKPHYNVTT TRLVNPDQLL NEIMSILPKK ENSBTAP00000028900/1-650 KVITVLTRSK RKGSVKDGPR RLKPHYNVTT TRLVNPDQLL NEIMSVLPKK bmy_02854T0/1-508 KVITVLTRSK RKGSTKDGPR RLKPHYNVTT TRLVNPDQLL NEIMSILPKK BACU017539/1-632 KVITVLTRSK RKGSAKDGPR RLKPHYNVTT TRLVNPDQLL NEIMSILPKK 601 650 ENSP00000298048/1-651 HVDFVQKGYT LKCQTQSDFG KVTMQFELEV CQLQKPDVVG IRRQRLKGDA ENSTTRP00000005713/1-650 HVDFVQKGYT LKCQTQSDFG KVTMQFELEV CQLQKPDVVG IRRQRLKGDA ENSBTAP00000028900/1-650 HVDFVQKGYT LKCQTQSDFG KVTMQFELEV CQLQKPDVVG IRRQRLKGDA bmy_02854T0/1-508 HVDFVQKGYT LKCQTQSDFG KVTMQFELEV CQLQKPDVVG IRRQRLKGDA BACU017539/1-632 HVDFVQKGYT LKCQTQSDFG KVTMQFELEV CQLQKPDVVG IRRQRLKGDA 651 700 ENSP00000298048/1-651 WVYKRLVEDI LSSCKV ENSTTRP00000005713/1-650 WVYKRLVEDI LSSCKV ENSBTAP00000028900/1-650 WVYKRLVEDI LSSCKV bmy_02854T0/1-508 WVYKRLVEDI LSSCKV BACU017539/1-632 WVYKRLVEDI LSSCKV