KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:37:14 2014 Check: 00 .. Name: bmy_15303T0/1-657 Len: 697 Check: 9001 Weight: 1.00 Name: BACU010076/1-533 Len: 697 Check: 3198 Weight: 1.00 Name: ENSP00000374205/1-682 Len: 697 Check: 3914 Weight: 1.00 Name: ENSBTAP00000028908/1-682 Len: 697 Check: 1462 Weight: 1.00 Name: ENSTTRP00000006283/1-450 Len: 697 Check: 6369 Weight: 1.00 // 1 50 bmy_15303T0/1-657 MQLEHCLSPS IMLSKKFLNV SSSYPHSGGS ELVLHDHPII STTDNLERSS BACU010076/1-533 MQLEHCLSPS IMLSKKFLNV SSSYPHSGGS ELVLHDHPII PTTDNLERSS ENSP00000374205/1-682 MQLEHCLSPS IMLSKKFLNV SSSYPHSGGS ELVLHDHPII STTDNLERSS ENSBTAP00000028908/1-682 MQLEHCLSPS IMLSKKFLNV SSSYPHSGGS ELVLHDHPII STTDNLERSS ENSTTRP00000006283/1-450 ---------- ---------- ---------- ---------- ---------- 51 100 bmy_15303T0/1-657 PLKKITRGMT NQSDTDNFPD SKDSPGDVQR SKLSPVLDGV SELRHSFDGS BACU010076/1-533 PLKKITRGMT NQSDTDNFPD SKDSPGDVQR SKLSPVLDGV SELRHSFDGS ENSP00000374205/1-682 PLKKITRGMT NQSDTDNFPD SKDSPGDVQR SKLSPVLDGV SELRHSFDGS ENSBTAP00000028908/1-682 PLKKITRGMT NQSDTDNFPD SKDSPGDVQR SKLSPVLDGV SELRHSFDGS ENSTTRP00000006283/1-450 ---------- ---------- ---------- ---------- ---------- 101 150 bmy_15303T0/1-657 AADRYLLSQS SQPQSAATAP SAMFPYAGQH GPAHPAFSIG SPSRYMAHHP BACU010076/1-533 AADRYLLSQS SQPQSAATAP SAMFPYAGQH GPAHPAFSIG SPSRYMAHHP ENSP00000374205/1-682 AADRYLLSQS SQPQSAATAP SAMFPYPGQH GPAHPAFSIG SPSRYMAHHP ENSBTAP00000028908/1-682 AADRYLLSQS SQPQSAATAP SAMFPYPGQH GPAHPAFSIG SPSRYMAHHP ENSTTRP00000006283/1-450 ---------- ---------- -RMFPFL--- ---------- ---------- 151 200 bmy_15303T0/1-657 VITNGAYNSL LSNSSPQGYP TAGYPYPQQY GHSYQGAPFY QFSSTQPGLV BACU010076/1-533 VITNGAYNSL LSNSSPQGYP TAGYPYPQQY GHSYQGAPFY QFSSTQPGLV ENSP00000374205/1-682 VITNGAYNSL LSNSSPQGYP TAGYPYPQQY GHSYQGAPFY QFSSTQPGLV ENSBTAP00000028908/1-682 VITNGAYNSL LSNSSPQGYP AAGYPYPQQY GHSYQGAPFY QFSSTQPGLV ENSTTRP00000006283/1-450 ---------- ---------- ---------- ---------- ---------- 201 250 bmy_15303T0/1-657 PGKAQVYLCN RPLWLKFHRH QTEMIITKQG -------SFN ISGLDPTAHY BACU010076/1-533 PGKAQVYLCN RPLWLKFHRH QTEMIITKQG RRMFPFLSFN ISGLDPTAHY ENSP00000374205/1-682 PGKAQVYLCN RPLWLKFHRH QTEMIITKQG RRMFPFLSFN ISGLDPTAHY ENSBTAP00000028908/1-682 PGKAQVYLCN RPLWLKFHRH QTEMIITKQG RRMFPFLSFN ISGLDPTAHY ENSTTRP00000006283/1-450 ---------- ---------- ---------- -------SFN ISGLDPTAHY 251 300 bmy_15303T0/1-657 NIFVDVILAD PNHWRFQGGK WVPCGKADTN VQ-------- ------GKKS BACU010076/1-533 NIFVDVILAD PNHWRFQGGK WVPCGKADTN VQGKSFQLTR FPDTYLGNRV ENSP00000374205/1-682 NIFVDVILAD PNHWRFQGGK WVPCGKADTN VQ-------- ------GNRV ENSBTAP00000028908/1-682 NIFVDVILAD PNHWRFQGGK WVPCGKADTN VQ-------- ------GNRV ENSTTRP00000006283/1-450 NIFVDVILAD PNHWRFQGGK WVPCGKADTN VQ-------- ------GNRV 301 350 bmy_15303T0/1-657 GLYASRFPQH GGSLDASRNL FWKIK----- ---------- TYKQQRSFKQ BACU010076/1-533 YMHPDS-PNT GAHWMRQEIS FGKLKLTNNK GASNNNGQMV VLQSLHKYQP ENSP00000374205/1-682 YMHPDS-PNT GAHWMRQEIS FGKLKLTNNK GASNNNGQMV VLQSLHKYQP ENSBTAP00000028908/1-682 YMHPDS-PNT GAHWMRQEIS FGKLKLTNNK GASNNNGQMV VLQSLHKYQP ENSTTRP00000006283/1-450 YMHPDS-PNT GAHWMRQEIS FGKLKLTNNK GASNNNGQMV VLQSLHKYQP 351 400 bmy_15303T0/1-657 QW---AVNED GTEDTSQPGR VQTFTFPETQ FIAVTAYQNT DITQLKIDHN BACU010076/1-533 RLHVVEVNED GTEDTSQPGR VQTFTFPETQ FIAVTAYQNT DITQLKIDHN ENSP00000374205/1-682 RLHVVEVNED GTEDTSQPGR VQTFTFPETQ FIAVTAYQNT DITQLKIDHN ENSBTAP00000028908/1-682 RLHVVEVNED GTEDTSQPGR VQTFTFPETQ FIAVTAYQNT DITQLKIDHN ENSTTRP00000006283/1-450 RLHVVEVNED GTEDTSQPGR VQTFTFPETQ FIAVTAYQNT DITQLKIDHN 401 450 bmy_15303T0/1-657 PFAKGFRDNY DTIYTGCDMD RLTPSPNDSP RSQIVPGARY AMAGSFLQDQ BACU010076/1-533 PFAKGFRDNY DTIYTGCDMD RLTPSPNDSP RSQIVPGARY AMAGSFLQDQ ENSP00000374205/1-682 PFAKGFRDNY DTIYTGCDMD RLTPSPNDSP RSQIVPGARY AMAGSFLQDQ ENSBTAP00000028908/1-682 PFAKGFRDNY DTIYTGCDMD RLTPSPNDSP RSQIVPGARY AMAGSFLQDQ ENSTTRP00000006283/1-450 PFAKGFRDNY DTIYTGCDMD RLTPSPNDSP RSQIVPGARY AMAGSFLQDQ 451 500 bmy_15303T0/1-657 FVSNYAKARF HPGAGAGPGP GTDRSVPHTN GLLSPQQAED PGAPSPQRWF BACU010076/1-533 FVSNYAKARF HPGAGAGPGP GTDRSVPHTN GLLSPQQAED PGAPSPQRWF ENSP00000374205/1-682 FVSNYAKARF HPGAGAGPGP GTDRSVPHTN GLLSPQQAED PGAPSPQRWF ENSBTAP00000028908/1-682 FVSNYAKARF HPGAGAGPGP GTDRSVPHTN GLLSPQQAED PGAPSPQRWF ENSTTRP00000006283/1-450 FVSNYAKARF HPGAGAGPGP GTDRSVPHTN GLLSPQQAED PGAPSPQRWF 501 550 bmy_15303T0/1-657 VTPANNRLDF AASAYDTATD FAGNAATLLS YAAAGVKALP LQAAGCTGRP BACU010076/1-533 VTPANNRLDF AASAYDTATD FAGNAATLL- ---------- ---------- ENSP00000374205/1-682 VTPANNRLDF AASAYDTATD FAGNAATLLS YAAAGVKALP LQAAGCTGRP ENSBTAP00000028908/1-682 VTPANNRLDF AASAYDTATD FAGNAATLLS YAAAGVKALP LQAAGCTGRP ENSTTRP00000006283/1-450 VTPANNRLDF AASAYDTATD FAGNAATLLS YAAAGVKALP LQAAGCTGRP 551 600 bmy_15303T0/1-657 LGYYADPSGW GARSPPQYCG AKSGSVLPCW PNSAAAAARM AGANPYLGEE BACU010076/1-533 ---------- ---------- ---------- ---------- ---------- ENSP00000374205/1-682 LGYYADPSGW GARSPPQYCG TKSGSVLPCW PNSAAAAARM AGANPYLGEE ENSBTAP00000028908/1-682 LGYYADPSGW GARSPPQYCG AKSGSVLPCW PNSAAAAARM AGANPYLGEE ENSTTRP00000006283/1-450 LGYYADPSGW GARSPPQYCG AKSGSVLPCW PNSAAAAARM AGANPYLGEE 601 650 bmy_15303T0/1-657 AEGLAAERSP LPPG-AEDAK PKDLSDSSWI ETPSSIKSID SSDSGIYEQA BACU010076/1-533 ---------- ---------- ---------- ---SSFRS-- ---------- ENSP00000374205/1-682 AEGLAAERSP LPPGAAEDAK PKDLSDSSWI ETPSSIKSID SSDSGIYEQA ENSBTAP00000028908/1-682 AEGLAAERSP LPPGAAEDAK PKDLSDSSWI ETPSSIKSID SSDSGIYEQA ENSTTRP00000006283/1-450 AEGLAAERSP LPPG-AEDAK PKDLSDSSWI ETPSSIKSID SSDSGIYEQA 651 700 bmy_15303T0/1-657 KRRRISPADT PVSESSSPLK SEVLAQRDCE KNCAKDIGGY YGFYSHS BACU010076/1-533 ---------- ---------- ---------- ---------- ------- ENSP00000374205/1-682 KRRRISPADT PVSESSSPLK SEVLAQRDCE KNCAKDISGY YGFYSHS ENSBTAP00000028908/1-682 KRRRISPADT PVSESSSPLK SEVLAQRDCE KNCAKDIGGY YGFYSHS ENSTTRP00000006283/1-450 KRRRISPADT PVSESSSPLK SEVLAQRDCE KNCAKDIGGY YGFYSHS