KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:37:15 2014 Check: 00 .. Name: ENSP00000389175/1-523 Len: 523 Check: 4248 Weight: 1.00 Name: ENSBTAP00000028914/1-500 Len: 523 Check: 2859 Weight: 1.00 Name: ENSTTRP00000001117/1-489 Len: 523 Check: 5481 Weight: 1.00 Name: bmy_11557T0/1-523 Len: 523 Check: 7030 Weight: 1.00 Name: BACU005558/1-523 Len: 523 Check: 5887 Weight: 1.00 // 1 50 ENSP00000389175/1-523 MAAALQVLPR LARAPLHPLL WRGSVARLAS SMALAEQARQ LFESAVGAVL ENSBTAP00000028914/1-500 MAAALQVLRH LARAPSGPLL WGGPLARMAS SMALAEQARQ LFESTVGAVL ENSTTRP00000001117/1-489 ---------- ---------- ---------- ---LAEQAQQ LFESTVGAVL bmy_11557T0/1-523 MAAALQVLRH LARAPLSPLL WGGPLARLAS SMALAEQARQ LFESTVGAVL BACU005558/1-523 MAAALQVLRH LARAPLSPLL WGGPLARLAS SMALAEQARQ LFESTVGAVL 51 100 ENSP00000389175/1-523 PGPMLHRALS LDPGGRQLKV RDRNFQLRQN LYLVGFGKAV LGMAAAAEEL ENSBTAP00000028914/1-500 PGPLLQRALS LDPDSGELKV RDRSFQLRQN LYLVGFGKAV LGMAAAAEEL ENSTTRP00000001117/1-489 PGPMLQRALS LDPDSGQLKV RDRS-QLQQN LYLVGFGKAV LGMATAAEEL bmy_11557T0/1-523 PGPMLQRALS LDPDSGQLKV RDRSFQLQQN LYLVGFGKAV LGMATAAEEL BACU005558/1-523 PGPMLQRALS LDPDSGQLKV RDRSFQLQQN LYLVGFGKAV LGMATAAEEL 101 150 ENSP00000389175/1-523 LGQHLVQGVI SVPKGIRAAM ERAGKQEMLL KPHSRVQVFE GAEDNLPDRD ENSBTAP00000028914/1-500 LGQHLVQGVI SVPKGIRAAM EHAGKQEMLL KPHSRIQVFE GAEDNLPDRD ENSTTRP00000001117/1-489 LGQHLVQGVI SVPKGIRAAM ESAGKQEMLL KPHSRVQVFE GAENNLPDRD bmy_11557T0/1-523 LGQHLVQGVI SVPKGIRAAM ESAGKQEMLL KPHSRVQVFE GAENNLPDRD BACU005558/1-523 LGQHLVQGVI SIPKGIRAAM ESAGKQEMLL KPHSRVQVFE GAENNLPDRD 151 200 ENSP00000389175/1-523 ALRAALAIQQ LAEGLTADDL LLVLISGGGS ALLPAPIPPV TLEEKQTLTR ENSBTAP00000028914/1-500 ALRAALAIRQ LAEGLTADDL LLVLISGGGS ALLPAPIPPV TLEEKQTLTK ENSTTRP00000001117/1-489 ALRAALAIRQ LAEGLTADDL LLVLISGGGS ALLPAPIPPV TLEEKQTLTK bmy_11557T0/1-523 ALRAALAIRQ LAEGLTADDL LLVLISGGGS ALLPAPIPPV TLEEKQTLTK BACU005558/1-523 ALRAALAIRQ LAEGLTADDL LLVLISGGGS ALLPAPIPPV TLEEKQTLTK 201 250 ENSP00000389175/1-523 LLAARGATIQ ELNTIRKALS QLKGGGLAQA AYPAQVVSLI LSDVVGDPVE ENSBTAP00000028914/1-500 LLAARGATIQ ELNTIRKALS QLKGGGLAQA AYPAQVVSLI LSDVVGDPVE ENSTTRP00000001117/1-489 LLAARGATIQ ELNTIRKALS QLKGGGLAQA AYPAQVVSLI LSDVVGDPVE bmy_11557T0/1-523 LLAARGATIQ ELNTIRKALS QLKGGGLAQA AYPAQVVSLI LSDVVGDPVE BACU005558/1-523 LLAARGATIQ ELNTIRKALS QLKGGGLAQA AYPAQVVSLI LSDVVGDPVE 251 300 ENSP00000389175/1-523 VIASGPTVAS SHNVQDCLHI LNRYGLRAAL PRSVKTVLSR ADSDPHGPHT ENSBTAP00000028914/1-500 VIASGPTVAS IHSVQDCLYI LNRYGLRTAL PRSVKTVLAR ADSDPHGPHT ENSTTRP00000001117/1-489 VIASGPTVAS IHSVQDCLHI LNRYGLRAAL PRSVKTVLAR ADSDPHGPHT bmy_11557T0/1-523 VIASGPTVAS IHSVQDCLHI LNRYGLRAAL PRSVKTVLAR ADSDPHGPHT BACU005558/1-523 VIASGPTVAS IHSVQDCLHI LNRYGLRAAL PRSVKTVLAR ADSDPHGPHT 301 350 ENSP00000389175/1-523 CGHVLNVIIG SNVLALAEAQ RQAEALGYQA VVLSAAMQGD VKSMAQFYGL ENSBTAP00000028914/1-500 CGHVLNVILG SNALALAEAQ KQAEALGYRA VVLSTAIQGD VKSVAQFYGL ENSTTRP00000001117/1-489 CGHVLNVIIG SNALALAEAQ KQAEALGYRA VVLSTAMQGD VKSVAQFYAL bmy_11557T0/1-523 CGHVLNVIIG SNALALAEAQ KQAEALGYRA VVLSTAIQGD VKSVAQFYAQ BACU005558/1-523 CGHVLNVIIG SNALALAEAQ KQAEALGYRA VVLSTAIQGD VKSVAQFYAL 351 400 ENSP00000389175/1-523 LAHVARTRLT PSMAGASVEE DAQLHELAAE LQIPDLQLEE ALETMAWGRG ENSBTAP00000028914/1-500 LARVAGAHLA LP-------- ---------- -----XQLKE ALEAVVGAPG ENSTTRP00000001117/1-489 LARVAGTRLT MPGAGASVEE DEQLYELAAE LQLPDLQLKE ALEAMVGTRG bmy_11557T0/1-523 LARVAGARLT MPGSGASVEE DEQLYELAAE LQLPDLQLKE ALEAVVGTRG BACU005558/1-523 LARVAGARLT MPGAGASVEE DEQLYELAAE LQLPDLQLKE ALEAVVGTRG 401 450 ENSP00000389175/1-523 PVCLLAGGEP TVQLQGSGRG GRNQELALRV GAELRRWPLG PIDVLFLSGG ENSBTAP00000028914/1-500 PVCLLAGGEP TVRLQGSGKG GRNQELALRV GVELGQWPLG TVDVLFLSGG ENSTTRP00000001117/1-489 PVCLLAGGEP TVQLQGSGKG GRNQELALRV GAELGRWPLG PADVLFLSGG bmy_11557T0/1-523 PVCLLAGGEP TVQLQGSGKG GRNQELALRV GAELGRWPLG PIDVLFLSGG BACU005558/1-523 PVCLLAGGEP TVQLQGSGKG GRNQELALRV GAELGRWPLG PIDVLFLSGG 451 500 ENSP00000389175/1-523 TDGQDGPTEA AGAWVTPELA SQAAAEGLDI ATFLAHNDSH TFFCCLQGGA ENSBTAP00000028914/1-500 TDGQDGPTEA AGAWVRPELT SQAAAEGLDV ATFLAHNDSH TFFCRFQGGA ENSTTRP00000001117/1-489 TDGQDGPTEA AGAWVRPELT SQAAAQGLDV AAFLAHNDSH TFFCRFQGGA bmy_11557T0/1-523 TDGQDGHTEA AGAWVRPELI SQAAAQGLDV AAFLAHNDSH TFFCRFQGGA BACU005558/1-523 TDGQDGPTEA AGAWVRPELI SQAAAQGLDV AAFLAHNDSH TFFCRFQGGA 501 550 ENSP00000389175/1-523 HLLHTGMTGT NVMDTHLLFL RPR ENSBTAP00000028914/1-500 HLLHTGLTGT NVTDAHFLFL HPQ ENSTTRP00000001117/1-489 HLLHTGLTGT NVMDAHLLFL QPR bmy_11557T0/1-523 HLLHTGLTGT NVMDAHLLFL QPR BACU005558/1-523 HLLHTGLTGT NVMDAHLLFL QPR