KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:37:18 2014 Check: 00 .. Name: ENSTTRP00000003015/1-742 Len: 801 Check: 7901 Weight: 1.00 Name: ENSBTAP00000028930/1-726 Len: 801 Check: 5705 Weight: 1.00 Name: BACU008363/1-755 Len: 801 Check: 4798 Weight: 1.00 Name: bmy_01419T0/1-731 Len: 801 Check: 4457 Weight: 1.00 Name: ENSP00000257566/1-743 Len: 801 Check: 166 Weight: 1.00 // 1 50 ENSTTRP00000003015/1-742 MSLSMRDPVI PGTSMAYHPF LPHRAPDFAM SAVLGHQPPF FPALTLPPNG ENSBTAP00000028930/1-726 MSLSMRDPVI PGTSMAYHPF LPHRAPDFAM SAVLGHQPPF FPALTLPPNG BACU008363/1-755 MSLSMRDPVI PGTSMAYHPF LPHRAPDFAM SAVLGHQPPF FPALTLPPNG bmy_01419T0/1-731 MSLSMRDPVI PGTSMAYHPF LPHRAPDFAM SAVLGHQPPF FPALTLPPNG ENSP00000257566/1-743 MSLSMRDPVI PGTSMAYHPF LPHRAPDFAM SAVLGHQPPF FPALTLPPNG 51 100 ENSTTRP00000003015/1-742 AAALSLPGAL AKPIMDQLVG AAETGIPFSS LGPQTHLRPL KTMEPEEEVE ENSBTAP00000028930/1-726 AAALSLPGAL AKPIMDQLVG AAETGIPFSS LGPQTHLRPL KTMEPEEEVE BACU008363/1-755 AAALSLPGAL AKPIMDQLVG AAETGIPFSS LGPQTHLRPL KTMEPEEEVE bmy_01419T0/1-731 AAALSLPGAL AKPIMDQLVG AAETGIPFSS LGPQTHLRPL KTMEPEEEVE ENSP00000257566/1-743 AAALSLPGAL AKPIMDQLVG AAETGIPFSS LGPQAHLRPL KTMEPEEEVE 101 150 ENSTTRP00000003015/1-742 DDPKVHLEAK ELWDQFHKRG TEMVITKSGX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000028930/1-726 DDPKVHLEAK ELWDQFHKRG TEMVITKSGR RMFPPFKVRC SGLDKKAKYI BACU008363/1-755 DDPKVHLEAK ELWDQFHKRG TEMVITKSGR RMFPPFKVRC SGLDKKAKYI bmy_01419T0/1-731 DDPKVHLEAK ELWDQFHKRG TEMVITKSGR RMFPPFKVRC SGLDKKAKYI ENSP00000257566/1-743 DDPKVHLEAK ELWDQFHKRG TEMVITKSGR RMFPPFKVRC SGLDKKAKYI 151 200 ENSTTRP00000003015/1-742 XXXXXXAADD CRYKFHNSRW MVAGKAD-EM PKRMYIHPDS -ATGEQWMSK ENSBTAP00000028930/1-726 LLMDIIAADD CRYKFHNSRW MVAGKADPEM PKRMYIHPDS PATGEQWMSK BACU008363/1-755 LLMDIIAADD CRYKFHNSRW MVAGKADPEM PKRMYIHPDS PATGEQWMSK bmy_01419T0/1-731 LLMDIIAADD CRYKFHNSRW MVAGKADPEM PKRMYIHPDS PATGEQWMSK ENSP00000257566/1-743 LLMDIIAADD CRYKFHNSRW MVAGKADPEM PKRMYIHPDS PATGEQWMSK 201 250 ENSTTRP00000003015/1-742 VVTFHKLKLT NNISDKHGFT LAFPSDQATW QGNYSFGTQT ILNSMHKYQP ENSBTAP00000028930/1-726 VVTFHKLKLT NNISDKHGF- ---------- ---------T ILNSMHKYQP BACU008363/1-755 VVTFHKLKLT NNISDKHGF- ---------- ---------T ILNSMHKYQP bmy_01419T0/1-731 VVTFHKLKLT NNISDKHGF- ---------- ---------T ILNSMHKYQP ENSP00000257566/1-743 VVTFHKLKLT NNISDKHGFT LAFPSDHATW QGNYSFGTQT ILNSMHKYQP 251 300 ENSTTRP00000003015/1-742 RFHIVRANDI LKLPYSTFRT YLFPETEFIA VTAYQNDKIT QLKIDNNPFA ENSBTAP00000028930/1-726 RFHIVRANDI LKLPYSTFRT YLFPETEFIA VTAYQNDKIT QLKIDNNPFA BACU008363/1-755 RFHIVRANDI LKLPYSTFRT YLFPETEFIA VTAYQNDKIT QLKIDNNPFA bmy_01419T0/1-731 RFHIVRANDI LKLPYSTFRT YLFPETEFIA VTAYQNDKIT QLKIDNNPFA ENSP00000257566/1-743 RFHIVRANDI LKLPYSTFRT YLFPETEFIA VTAYQNDKIT QLKIDNNPFA 301 350 ENSTTRP00000003015/1-742 KGFRDTGNGR REKRKQLTLQ SMRVFDDRHK KENGTSDESS SEQASFSCFA ENSBTAP00000028930/1-726 KGFRDTGNGR REKRKQLTLQ SMRVFDDRHK KENGTSDESS SEQAAFNCFA BACU008363/1-755 KGFRDTGNGR REKRKQLTLQ SMRVFDDRHK KENGTSDESS SEQAAFSCFA bmy_01419T0/1-731 KGFRDTGNGR REKRKQLTMQ SMRVFDDRHK KENGTSDESS SEQAAFSCFA ENSP00000257566/1-743 KGFRDTGNGR REKRKQLTLQ SMRVFDERHK KENGTSDESS SEQAAFNCFA 351 400 ENSTTRP00000003015/1-742 QSSSPAVSTV GTSNLKDLCP SEGESDAEAE SKEEHGPEAC DAAKISTTTS ENSBTAP00000028930/1-726 QSSSPAVSTV GTSNLKDLCP SEGESDAEAD SKEEHGPEAC DTAKISTTTS BACU008363/1-755 QSSSPAVSTV GTSNLKDLCP SEGESDAEAE SKEEHGPEAC DAAKISTTTS bmy_01419T0/1-731 QSSSPAVSTV GTSNL----- ---------- -KEEHGPEAC DAAKISTTTS ENSP00000257566/1-743 QASSPAASTV GTSNLKDLCP SEGESDAEAE SKEEHGPEAC DAAKISTTTS 401 450 ENSTTRP00000003015/1-742 EDPCRDKGSP AVKAHLFVAE PGGRPRDSGR LDKASPDSRH SPATISSSTR ENSBTAP00000028930/1-726 EDPCRDKGSP AVKAHLFAAE PGGRARDSGR LDKASPDSRH SPATISSSTR BACU008363/1-755 EDPCRDKGSP AVKAHLFVAE PGGRPRDSGR LDKASPDSRH SPATISSSTR bmy_01419T0/1-731 EDPCRDKGSP AVKAHLFVAE PGGRPRDSGR LDKASPDSRH SPATISSSTR ENSP00000257566/1-743 EEPCRDKGSP AVKAHLFAAE ---RPRDSGR LDKASPDSRH SPATISSSTR 451 500 ENSTTRP00000003015/1-742 GL-------- ---------- ---------- --GAEERRSP GREGAAPSK- ENSBTAP00000028930/1-726 GL-------- ---------- ---------- --GAEERRSP GRDSAATSKA BACU008363/1-755 GLXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXX- bmy_01419T0/1-731 GL-------- ---------- ---------- --GAEERRSP GREGAATSK- ENSP00000257566/1-743 GL-------- ---------- ---------- --GAEERRSP VREGTAPAK- 501 550 ENSTTRP00000003015/1-742 AEEARALPGK EAFAPLTVQT DAAAAHLGQG PLPGLGFAPG LAGQQFFNGH ENSBTAP00000028930/1-726 AEEARVLPGK EAFAPLTVQT DPAAAHLGQG PLPGLGFAPG LAGQQFFNGH BACU008363/1-755 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_01419T0/1-731 AEEARTLPGK EAFAPLTVQT DAAAAHLGQG PLPGLGFAPG LAGQQFFNGH ENSP00000257566/1-743 VEEARALPGK EAFAPLTVQT DAAAAHLAQG PLPGLGFAPG LAGQQFFNGH 551 600 ENSTTRP00000003015/1-742 PLFLHPGQFA MGGAFSSM-A AGMGPLLATV SGASTGVSGL DSTAMASAAA ENSBTAP00000028930/1-726 PLFLHPGQFA MGGAFSSM-A AGMGPLLATV SGASTGVSGL DSTAMASAAA BACU008363/1-755 XXXXXPGQFA MGGAFSSM-A AGMGPLLATV SGASTGVSGL DSTAMASAAA bmy_01419T0/1-731 PLFLHPGQFA MGGAFSSM-A AGMGPLLATV SGASTGVSGL DSTAMASAAA ENSP00000257566/1-743 PLFLHPSQFA MGGAFSSMAA AGMGPLLATV SGASTGVSGL DSTAMASAAA 601 650 ENSTTRP00000003015/1-742 AQGLSGASAA TLPFHLQQHV LASQXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000028930/1-726 AQGLSGAS-A TLPFHLQQHV LASQALSFAC LLEPDPHQVS LPNNNLLLLL BACU008363/1-755 AQGLSGASAA TLPFHLQQHV LASQGLAMSP FGSLFPYPYT YMAAAAAASS bmy_01419T0/1-731 AQGLSGASAA TLPFHLQQHV LASQGLAMSP FGSLFPYPYT YMAAAAAASS ENSP00000257566/1-743 AQGLSGASAA TLPFHLQQHV LASQGLAMSP FGSLFPYPYT YMAAAAAASS 651 700 ENSTTRP00000003015/1-742 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXX--XX XXXXXXXXXX ENSBTAP00000028930/1-726 GARLISLIHH NLTPTPSKLC TLQYEATSLP PPIPHCKQAK LLPKGLIVCA BACU008363/1-755 AAASSSVHRH PFLNLNTMRP RLRYSPYSIP VPVPDS--GS LLTTALPSMA bmy_01419T0/1-731 AAASSSVHRH PFLNLNTMRP RLRYSPYSIP VPVPDS--SS LLTTALPSMA ENSP00000257566/1-743 AAASSSVHRH PFLNLNTMRP RLRYSPYSIP VPVPDG--SS LLTTALPSMA 701 750 ENSTTRP00000003015/1-742 XXXGPLDGKA AALAAS-ASV A--------- ---------- ---VDSGSEL ENSBTAP00000028930/1-726 HV-GNVRGQT GAMAGLAACV G--------- ---------- ---EGLPGST BACU008363/1-755 AAAGPLDGKA AALAASPASV A--------- ---------- ---VDSGSEL bmy_01419T0/1-731 AAAGPLDGKA AALAASPASV AVDSGSELNS RSSTLSSSSV SLSVDSGSEL ENSP00000257566/1-743 AAAGPLDGKV AALAASPASV A--------- ---------- ---VDSGSEL 751 800 ENSTTRP00000003015/1-742 NSRSSTLSSS SVSLSPKLCP EKEAATSELQ NIQRLVSGLE AKPDRSRSAS ENSBTAP00000028930/1-726 SSNSTTEAMG PLDXSPKLCP EKEAATSELQ NIQRLVSGLE AKPDRSRSAS BACU008363/1-755 NSRSSTLSSS SVSLSPKLCP EKEAATSELQ NIQRLVSGLE AKPDRSRSAS bmy_01419T0/1-731 NSRSSTLSSS SVSLSPKLCP EKEAATSELQ NIQRLVSGLE AKPDRSRSAS ENSP00000257566/1-743 NSRSSTLSSS SMSLSPKLCA EKEAATSELQ SIQRLVSGLE AKPDRSRSAS 801 850 ENSTTRP00000003015/1-742 P ENSBTAP00000028930/1-726 P BACU008363/1-755 P bmy_01419T0/1-731 P ENSP00000257566/1-743 P