KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:37:19 2014 Check: 00 .. Name: ENSP00000414517/1-998 Len: 1026 Check: 1475 Weight: 1.00 Name: ENSBTAP00000028946/1-727 Len: 1026 Check: 5736 Weight: 1.00 Name: ENSTTRP00000005350/1-745 Len: 1026 Check: 4917 Weight: 1.00 Name: bmy_06474T0/1-590 Len: 1026 Check: 343 Weight: 1.00 Name: BACU007745/1-731 Len: 1026 Check: 3817 Weight: 1.00 // 1 50 ENSP00000414517/1-998 MDDWKSRLVI KSMLPHFAMV GNRQEPRKLQ ES-------- ---------- ENSBTAP00000028946/1-727 MDDWKSRLVV KSMLPHFAMV GNRQEPRKLQ ESAQ------ ---------- ENSTTRP00000005350/1-745 MDDWKSRLVI KSMLPHFAMV GNRQEPRKLQ ESGERPSVGE EHSSLLCRSR bmy_06474T0/1-590 ---------- ---------- ---------- ---------- ---------- BACU007745/1-731 MDDWKSRLVI KSMLPHFAVV GNRQEPRKLQ ESPQ------ ---------- 51 100 ENSP00000414517/1-998 --GTVKRRQE EDHFQFPDMA DGGYPNKIKR PCLEDVTLAM GPGA-HPSTA ENSBTAP00000028946/1-727 --GTTKRRQE GEDFQLSGMG DEGYPNQIKR PCLEDVTLSM GPGA-HPSTA ENSTTRP00000005350/1-745 KHGTIKRRQE GE-FQL-GMA EGGYPNKIKR PCLEDVTLSM GPGAHHPSTA bmy_06474T0/1-590 ---------- --------MA EGGYPNKIKR PCLEDVTLSM GPGA-HPSTA BACU007745/1-731 --GTVKRRQE GETFQLSGMA EGGYPNKIKR PCLEDVTLSM GPGA-HPSTA 101 150 ENSP00000414517/1-998 CAELQVPPLT INPSPAAMGV AGQSLLLENN PMNGNIMGSP FVVPQTTEVG ENSBTAP00000028946/1-727 CAQLQVPALP MNPSSTAMAA PGHPLLLDNS PRNGSVMGPP FAGPPTAEMG ENSTTRP00000005350/1-745 CAELQ-PALP MNPGSAAMGA AGHSLLLEN- PMNGSVMGS- FV--PTAE-G bmy_06474T0/1-590 CAELQVPALP MNPSSAAMGA AGHSLLLENN PMNGSVMGSP FVVPPTAEMG BACU007745/1-731 CAELQVPALA MNPSSAAMGA AGHSLLLENN PMNGSVMGSP FVVPPTAEMG 151 200 ENSP00000414517/1-998 LKGPTVPYYE KINSVPAVDQ ELQELLEELT KIQDPSPNEL DLEKILGTKP ENSBTAP00000028946/1-727 VKGPSIPYYD KTNSAPAVDQ ELQDLLEELT EIQESSQSEL DLEKILGTKP ENSTTRP00000005350/1-745 LK-PPLSYY- QTNTVPAVDQ ELQDLLEELT KIQEPSPSEL DLEKILGSKP bmy_06474T0/1-590 LKGPPLSYYD KTNTVPAVDQ ELQDLLEELT KIQEPSPSEL DLEKILGSKP BACU007745/1-731 LKGPPLSYYD KTNTVPAVDQ ELQDLLEELT KIQEPSPSEL DLEKILGSKP 201 250 ENSP00000414517/1-998 EEPLVLD-HP QATLSTTPKP SVQMSHLESL ASSKEFASSC SQVTGMSLQI ENSBTAP00000028946/1-727 EEPLVLQHHP PATLGATAKP TVQMPRLESL SSSKDFASSC SLDTGVSLQI ENSTTRP00000005350/1-745 EEPLVLD-HP PATLGVTPKP AVQMPHLESL GSSKDFASSC SQVPGVSLQI bmy_06474T0/1-590 EEPLVLD-HP PATLGVTPKP AVQMPHLESL GSSKDFASSC SQVPGVSLQI BACU007745/1-731 EELLVLD-HP PATLGVTPKP AVQMPHLESL GSSKDFASSC SQVPGVSLQI 251 300 ENSP00000414517/1-998 PSSSTGISYS IPSTSKQIVS PSSSMAQSKS QVQAMLP-VA LPPLPVPQWH ENSBTAP00000028946/1-727 PPSSAGFSYA ITPASKQMAS PSSSTGQAKN QAQVTLS-AA LPPLPVSQWH ENSTTRP00000005350/1-745 PPSSAGISYA IPSTSKQMVS PSSSTAQAKS QVQAPLPAAA LPPLPVPQWH bmy_06474T0/1-590 PPSSAGISYV IPSTSKQMVS PSSSTAQAKS QVQAPLPAAA LPPLPVPQWH BACU007745/1-731 PPSSAGISYV IPSTSKQMVS PSSSTAQAKS QVQAPLPAAA LPPLPVPQWH 301 350 ENSP00000414517/1-998 HAHQLKALAA SKQGSATKQQ GPTPSWSGLP PPGLSPPYRP VPSPHPPPLP ENSBTAP00000028946/1-727 HAHQLKALAA SKQGSSKKQL DPTTSWSGLP SPGLSPPYQP VPVVSPQPL- ENSTTRP00000005350/1-745 HAHQLKVLAA SKQGCSTKQQ GPAPSWSGLP LPGLSPPYRP LP--SPQPL- bmy_06474T0/1-590 HAHQLKALAA SKQGSSTKQP GPAPSWSGLP LPGLSPPYRP XP--SPQPL- BACU007745/1-731 HAHQLKALAA SKQGSSTKQP GPAPRWSGLP LPGLSPPYRP LP--SPQPL- 351 400 ENSP00000414517/1-998 LPPPPPPFSP QSLMVSCMSS NTLSGSTLRG SPNALLSSMT SSSNAALGPA ENSBTAP00000028946/1-727 -----PPFSP QGLMVSCMSS SSLPGTTLQG SPNTLLSSLA PSSSTVLGPA ENSTTRP00000005350/1-745 -----QPFSP QGLMVSCMSS -----SALQG SPNALLSSVA PSSGAALGPA bmy_06474T0/1-590 -----QPFSP QGLMVSCMSS SSLPASALQG SPNALLSSVA PSSGAALGPA BACU007745/1-731 -----QPFSP QGLMVSCMSS SSLPASALQG SPNALLCSVA PSSGAALGPA 401 450 ENSP00000414517/1-998 MPYAPEKLPS PALTQQPQFG PQSSILANLM SSTIKTPQGH LMSALPASNP ENSBTAP00000028946/1-727 RPYAPEKFPS PTLQQPPPFS TQTSILANLM SSTVKHPQGH LMSALPTSNT ENSTTRP00000005350/1-745 MTYAPEKLPS PALQQQPQFS PQPSILANLV SSTIKQPQGH LISTLPTSNP bmy_06474T0/1-590 MTYAPEKLPS PALQQQPQFS PQPSILANLV SSTIKHPQGH LLSTLPTSNP BACU007745/1-731 MTYAPEKLPS PALQQQPQFS PQPSILANLV SSTIKHPQGH LLSTLPTSNP 451 500 ENSP00000414517/1-998 GPSPPYRPEK LSSPGLPQQS FTPQCSLIRS LTPTSNLLSQ QQQQ----QQ ENSBTAP00000028946/1-727 GPLTPYRPET LSSPSLPQQS FTAQCPLIQG LTTSAHPL-- --------CQ ENSTTRP00000005350/1-745 GPSTPYRPEK LSSPGLPQQS FTPQCPLIRS LTPTSNPLGP QQPQLQLPPP bmy_06474T0/1-590 GPSTPYHPEK LSSPGLPQ-- ----CPLIRS LTPTSSPLGP QQPQLQL-PP BACU007745/1-731 GPSTPYHPEK LSSSSLPQ-- ----CPLIRS LTPTSSPLGP QLQL----PP 501 550 ENSP00000414517/1-998 QQQQANVIFK PISSNSSKTL SMIMQQGMAS SSPGATEPFT FGNTKPLSHF ENSBTAP00000028946/1-727 PQPPASAIYK P------KTL SMIMQQDLSS PSPGASEPFP FGHTKPLSHF ENSTTRP00000005350/1-745 PPPPASTLLK PMATSSPRTL SLIMQQGLAA PSPGAPEPFP FGHTKPLSHF bmy_06474T0/1-590 PPPPASAILK PLATSSPRTL SLIMQQGLAG PSPGAPEPFT FGHTKPLSHF BACU007745/1-731 LPPPASAILK PMATSSPRTL SLITQQGLAG PSPGAPEPFT FGHTKPLSHF 551 600 ENSP00000414517/1-998 VSEPGPQKMP SMPTTSRQPS LLHYLQQPTP TQASSATASS TATATLQLQQ ENSBTAP00000028946/1-727 MSEPGPQKMP SVPTTSRQPA LLHYLQQPTP PPASSATASS TAT--LQL-- ENSTTRP00000005350/1-745 VSEPGPPKMP SVPAASRQPA LLHYLQQPTL TPASSATASS TATASLQL-- bmy_06474T0/1-590 VSEPGPPQMP SVPAASRQPA LLHCLQQPTL TPASSAAASP TASASLQL-- BACU007745/1-731 VSEPGPLKMP SVPAASRQPA LLHYLQQPTL TPASSATASS TATASLQL-- 601 650 ENSP00000414517/1-998 QQQQQQQQPD HSSFLLQQMM QQPQRFQRSV A-SDSMPALP RQQEEQRSGL ENSBTAP00000028946/1-727 -----QQQPD ISSFLLQHVT QQPQRFQRSL ALGDSMPSLP RQAC------ ENSTTRP00000005350/1-745 -----QQQPD AASFLLQHVT QQPQRVQRSV A-SDSMPSLP RQAC------ bmy_06474T0/1-590 -----QRQPD AASLLLQHVT QQPQRVRRSV A-SDSMPSLP RQAC------ BACU007745/1-731 -----QQQPD AASFLLQHVT QQPQRVRRSA A-SDSMPSLP RQAC------ 651 700 ENSP00000414517/1-998 MAMTPERQNA YISQQMSPFE AVQEQVTSKC SRIKASPPSS KHLMPPRTGL ENSBTAP00000028946/1-727 ---------- ---CQLFSWT SVAGSMEHQL NHHWDPYPIR QHPQP----- ENSTTRP00000005350/1-745 ---------- ---CQLFSWT SAAG-LGECQ LQHWSPYPSR KEPQP----- bmy_06474T0/1-590 ---------- ---CQLFSWT SAAG-LGERQ RQHRSPYPSR QDPQP----- BACU007745/1-731 ---------- ---CQLFSWT SEAG-LGERQ RQHRSPYPSR QDPQP----- 701 750 ENSP00000414517/1-998 LQNNLSPGMI PLTRHQSCEG MGVISPTLGK RQGIFTSSPQ CPILSHSGQT ENSBTAP00000028946/1-727 ---------- ---------- -GAVSP---- ---------- ---------S ENSTTRP00000005350/1-745 ---------- ---------- -GAVSP---- ---------- ---------S bmy_06474T0/1-590 ---------- ---------- -GAVSP---- ---------- ---------S BACU007745/1-731 ---------- ---------- -GAVSP---- ---------- ---------S 751 800 ENSP00000414517/1-998 PLGRLDSVCQ HMQSPKATPP EVPLPGFCPS SLGTQSLSPH QLRRPSVPRM ENSBTAP00000028946/1-727 KITHVDKACK L---GEARPP QVSL------ ---------- ---------- ENSTTRP00000005350/1-745 NITHVDKACK L---GEARPP QVSL------ ---------- ---------- bmy_06474T0/1-590 NI-------- ---------- ---------- ---------- ---------- BACU007745/1-731 NITHVDKACK L---GEARPP QVSL------ ---------- ---------- 801 850 ENSP00000414517/1-998 PTAFNNAAWV TAAAAVTTAV SGKTPLSQVD NSVQQHSPSG QACLQRPSDW ENSBTAP00000028946/1-727 ---------- ---------- -GRQP----- ---------- ---------- ENSTTRP00000005350/1-745 ---------- ---------- -GRQP----- ---------- ---------- bmy_06474T0/1-590 ---------- ---------- ---------- ---------- ---------- BACU007745/1-731 ---------- ---------- -GRQP----- ---------- ---------- 851 900 ENSP00000414517/1-998 EAQVPAAMGT QVPLANNPSF SLLGSQSLRQ SPVQGPVPVA NTTKFLQQGM ENSBTAP00000028946/1-727 ---------- -------PSC QALGSESF-- ------LPSS SFAHELAQVT ENSTTRP00000005350/1-745 ---------- -------PSC QALGSESF-- ------LPGS SFAQELARVT bmy_06474T0/1-590 ---------- ---------- ---------- ---------- ---------- BACU007745/1-731 ---------- -------PSC QALGSESF-- ------LPGS SFAQDLARVT 901 950 ENSP00000414517/1-998 ASFSPLSPIQ GIEPPSYVAA AATAAAASAV AASQFPGPFD RTDIPPELPP ENSBTAP00000028946/1-727 SSY------- ---------- -------STS EAAPWGPLWE ---------P ENSTTRP00000005350/1-745 SSY------- ---------- -------STS EAAPWGG-WD ---------P bmy_06474T0/1-590 ---------- ---------- ---------- ---------- ---------- BACU007745/1-731 SSY------- ---------- -------STS EAAPWGG-WD ---------P 951 1000 ENSP00000414517/1-998 ADFLRQPQPP LNDLISSPDC NEVDFIEALL KGSCVSPDED WVCNLRLIDD ENSBTAP00000028946/1-727 LELRS-PCIM L------SSC ---------- ---------- ---------- ENSTTRP00000005350/1-745 KAWRQVPAPL L------PSC ---------- ---------- ---------- bmy_06474T0/1-590 ---------- ---------- ---------- ---------- ---------- BACU007745/1-731 KAWRQVPAPL L------PSC ---------- ---------- ---------- 1001 1050 ENSP00000414517/1-998 ILEQHAAAQN ATAQNSGQVT QDAGAL ENSBTAP00000028946/1-727 ----HSKARE AEIRSYGNDP ------ ENSTTRP00000005350/1-745 ----DAVARE AEIRSYGNDP ------ bmy_06474T0/1-590 ---------- ---------- ------ BACU007745/1-731 ----DAVARE AEIRSYGNDP ------