KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:37:20 2014 Check: 00 .. Name: ENSP00000207457/1-430 Len: 536 Check: 9725 Weight: 1.00 Name: ENSBTAP00000028947/1-430 Len: 536 Check: 6571 Weight: 1.00 Name: ENSTTRP00000014308/1-430 Len: 536 Check: 371 Weight: 1.00 Name: bmy_10787T0/1-497 Len: 536 Check: 2417 Weight: 1.00 Name: BACU009666/1-475 Len: 536 Check: 6329 Weight: 1.00 // 1 50 ENSP00000207457/1-430 MATLSVKPSR RFQLPDWHTN SYLLSTNAQL QRDASHQIRQ EARVLRNETN ENSBTAP00000028947/1-430 MATLSVKPSP RFRLPDWQTN SYLLSTNAER QRDASHQIRQ EARVLRNETN ENSTTRP00000014308/1-430 MATLSVKPSP RFQLPDWHTN SCLLSTNAER QRDASHQIRQ EARVLCNETN bmy_10787T0/1-497 MATLSVKPSP RFRLPDWHTN SYLLSTNAER QRDASHQIRQ EARVLCNETN BACU009666/1-475 MATLSVKPSP RFRLPDWYTN SYLLSTNAER QRDASHQIRQ EARVLCNETN 51 100 ENSP00000207457/1-430 NQTIWDEHDN RTRLVERIDT VNRWKEMLDK CLTDLDAEID ALT------- ENSBTAP00000028947/1-430 NQTIWDEHDN RTRLAERIDT VSRWKEMLDK CLTDLDAEID ALA------- ENSTTRP00000014308/1-430 NQTIWDEHDN RTRLAERIDS VNRWKETLDK CLTDLDAEID ALT------- bmy_10787T0/1-497 NQTIWDEHDN RTRLAERIDT VNRWKEMLDK CLTDLDAEID ALTQAGSQG- BACU009666/1-475 NQTIWDEHDN RTRLAERIDT VNRWKEMLDK CLTDLDAEID ALTQAGSQGR 101 150 ENSP00000207457/1-430 ---------- ------QMKE SAEQNLQAKN LPLDVAIECL TLRESRRDID ENSBTAP00000028947/1-430 ---------- ------QMKE SAEQNLQAKN LPLDVAIECL TLRESRRDID ENSTTRP00000014308/1-430 ---------- ------QMKE SAEQNLQAKN LPLDVAIECL TLRESRRDID bmy_10787T0/1-497 ---------- ------RMKE SAEQNLQAKN LPLDVAIECL TLRESRRDID BACU009666/1-475 VPGDPACKDL PLPPLFRMKE SAEQNLQAKN LPLDVAIECL TLRESRRDID 151 200 ENSP00000207457/1-430 VVKDPVEDEL HKEVEVIEAT KKALQQKVSQ AFEQLC---- ---------- ENSBTAP00000028947/1-430 VVKDPVEEEL HKEVEVIEAT KKALQQKISQ AFEKLF---- ---------- ENSTTRP00000014308/1-430 VVKDPVEEEL HKEVEVIEAT KEALQQKISQ AFEKLC---- ---------- bmy_10787T0/1-497 VVKDLVEEEL HKEVEVTEAT KKALQQKISQ AFEKLC---- ---------- BACU009666/1-475 VVKDLVEEEL HKEVEVTEAT KKALQQKISQ AFEKLCTMRA AFQGLGGMAP 201 250 ENSP00000207457/1-430 --------LL QEVQQQLNSD HRGKMETLEI DRGCLSLNLR SPNISLKVDP ENSBTAP00000028947/1-430 --------LL QEARQRLNSD HRGKMETLDI DRGCLSLNLT SPNISLKINP ENSTTRP00000014308/1-430 --------LL QEVRQQLNSD HRGKMEAVDI DRGCFSLNLK SPNISLKINP bmy_10787T0/1-497 --------LL QEVRQQLNSD HRGKMETLDI DRGCFSLNLK SPNISLKINP BACU009666/1-475 DPVCSVPSLL QEVRQQLNSD HRGKMETLDI DRGCYSLNLK SPNISLKINP 251 300 ENSP00000207457/1-430 TRVPDGSTTL QQWDDFSRFN KDRAEAEMKA ATELREATAL TIAE------ ENSBTAP00000028947/1-430 TRVPNGSTSL QQWDDLSRFN KDHGEAEMKK AIELREAIAL TIAE------ ENSTTRP00000014308/1-430 TRVPSGSTTL QQWDDYSQFN KNRAEAEMKE SIELREAIAL TIAK------ bmy_10787T0/1-497 TRVPNGSTTL QQWDDCSQFN KNQAEAEMKG ALELREAIAL TIAKVTDHSP BACU009666/1-475 TRVPNGSTTL QQWDDCSQFN KNQAEAEMKG AIELREAIAL TIAK------ 301 350 ENSP00000207457/1-430 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000028947/1-430 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000014308/1-430 ---------- ---------- ---------- ---------- ---------- bmy_10787T0/1-497 YPDPPWLRDG PSMHSSPCLL FPVSRVASHP SPERHPQLAR AYTLPLPSPP BACU009666/1-475 ---------- ---------- ---------- ---------- ---------- 351 400 ENSP00000207457/1-430 -----TNNEL EAQRVATEFA FRKRLREMEK VYSELKWQEK NTLEEIAELQ ENSBTAP00000028947/1-430 -----TNNEL EAQRVATEFA FRKRLREMEK LYSELKWQEK NTLEEIAELH ENSTTRP00000014308/1-430 -----TNNEL EAQRVATEFA FRKRLWEMEK VYSELKWQEK NTLEEIAELQ bmy_10787T0/1-497 TFCPQTNNEL EAQRVATEFA FRKRLWEMEK VYSELKWQEK NTLEEIAELQ BACU009666/1-475 -----TNNEL EAQRVATEFA FRKRLWEIEK VYSELKWQEK NTLEEIAELQ 401 450 ENSP00000207457/1-430 EDIRHLEEDL RTKLLSLKLS HTRLEARTYR PNVELCRDQA QYGLTDEVHQ ENSBTAP00000028947/1-430 EDIRHLEEDL RRKLQNLKLC HTRLEARTYR PNVELCRDQA QYGLTDEVHQ ENSTTRP00000014308/1-430 EDIRHLEEDL RRKLQNLKLC HTRLETRTYR PNVELCRDQA QYGLTEEVYQ bmy_10787T0/1-497 EDIRHLEEDL RRKLQNLKLC HTRLETRTYR PNVELCRDQA QYGLTEEVHQ BACU009666/1-475 EDIRHLEEDL RRKLQNLKLC HTRLETRTYR PNVELCRDQA QYGLTEEVHQ 451 500 ENSP00000207457/1-430 LEATIAALKQ KLAQAQDALD ALCKHLARLQ ADIACKANSM LLDTKCMDTR ENSBTAP00000028947/1-430 LEATIAALKQ KLAQAQDALD ALYKHLARLQ ADIACKANSM LLDTKCMDTR ENSTTRP00000014308/1-430 LEATTAALKQ KLAQAQDALD ALYQHLARLQ ADIACKANSM LLDTKCMDTR bmy_10787T0/1-497 LEATTAALKQ KLAQAQDALD ALYQHLARLQ ADIACKANSM LLDTKCMDTR BACU009666/1-475 LDATTAALKQ KLAQAQDALD ALYQHLAWLQ ADIACKANSM LLDTKCMDIR 501 550 ENSP00000207457/1-430 RKLTVPAERF VPEVDTFTRT TNSTLSPLKS CQLELA ENSBTAP00000028947/1-430 RKLTVPAEKF VPEVDTFTRT TNRTLSPLKT CQLELA ENSTTRP00000014308/1-430 RKLTMPAEKF VPEVDTFTRT TNRTLSPLQT CPLELT bmy_10787T0/1-497 RKLTMPAEKF VPEVDTFTRT TNRTLSPLRT CQLELT BACU009666/1-475 RKLTMPAEKF VPEVDTFTRT TNRTLSPLKT CQLELT