KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:37:21 2014 Check: 00 .. Name: ENSP00000365465/1-529 Len: 608 Check: 4576 Weight: 1.00 Name: ENSBTAP00000028955/1-559 Len: 608 Check: 4454 Weight: 1.00 Name: bmy_16311T0/1-505 Len: 608 Check: 5679 Weight: 1.00 Name: ENSTTRP00000006147/1-484 Len: 608 Check: 8691 Weight: 1.00 // 1 50 ENSP00000365465/1-529 MGSSRAPWMG RVGGHGMMAL LLAGLLLPGT LAKSIGTFSD PCKDPTRITS ENSBTAP00000028955/1-559 MGSSRASQIG CVGGRGVLAL LLAGLLLQGT LAKSIGTFLD PCKDPTRITS bmy_16311T0/1-505 MGSSRASWIG RVGGQGMLAL LLAGLLLRGT LAKSIGTFSD PCKDHTSITS ENSTTRP00000006147/1-484 MGSARASRIG LVGGRGMLAL LLASLLLQGT LTKSIGTFSD PCRDHTSITS 51 100 ENSP00000365465/1-529 PNDPCLTGKG DSS------- ---------G FSSYSGSSSS ---------- ENSBTAP00000028955/1-559 PNDPCLLGKG GSSSSSGGSS GSSGGGSSGS SSGSSGSSSS SSGVSSGLSG bmy_16311T0/1-505 PSDPCLLGKG GSS------- ---------S FSSQSGSSSS SSFLSS--SS ENSTTRP00000006147/1-484 PSDPCLLGKG SSS------- ---------S FSSQSGSSSS ---------- 101 150 ENSP00000365465/1-529 ----GSSISS ARS------S GG--GSSG-- ---------- ---------- ENSBTAP00000028955/1-559 HPSGGSSGSS SGSNVSSGPS GSSSGSSGVS SGLSGRPSGG YSGSSSGVSS bmy_16311T0/1-505 GSRGGSSGGS NGS------S GGSSGSSG-- ---------- ---------- ENSTTRP00000006147/1-484 ---GGSSGGS SGS------S GSRGGSSG-- ---------- ---------- 151 200 ENSP00000365465/1-529 -----SSSGS SIAQGGSAGS --FKPGTGYS QVSYSSGSGS SLQGASGSSQ ENSBTAP00000028955/1-559 SASGSGSTGS IVAHGGSSGS SLFKPGTGYS QISYSSGSGS SLQGASSSLP bmy_16311T0/1-505 -----GSSGS IATHGRSSGF SLFKPGTGYS QISYSSGSSS SLQDASSSSQ ENSTTRP00000006147/1-484 -----GSSRS IATQGRSSGF PLFKPGTGYS QISYSSGPSP SLQGASSSSQ 201 250 ENSP00000365465/1-529 LGSSSSHSGN SGSHSGSSSS HSSSSSSFQF SSSSFQVGNG SALPTNDNSY ENSBTAP00000028955/1-559 SGSISSPSGG GLSSSGSQTS WLS------- ---------- ---------- bmy_16311T0/1-505 SGSISSQSGG GSSSSVSQTS SMS------- ---------- ---------- ENSTTRP00000006147/1-484 SGSLSSQSGG GSSSSVSQIS SMS------- ---------- ---------- 251 300 ENSP00000365465/1-529 RGILNPSQPG QSSSSSQTFG VSSSGQSVSS NQRPCSSDIP DSPCSGGPIV ENSBTAP00000028955/1-559 ---------- ---------- -SSGGQKVSS KLRPCGPDIP DSPCSGGPIV bmy_16311T0/1-505 ---------- ---------- -XSSGPKVNA KLHPCSSNIP DSPCSGGPIV ENSTTRP00000006147/1-484 ---------- ---------- -SSSGQEVNA KLSPCSSNIP DSPCSGGPIV 301 350 ENSP00000365465/1-529 SHSGPYIPSS HSVSGGQRPV VVVVDQHGS- --GAPGVVQG PPCSNGGLPG ENSBTAP00000028955/1-559 SHSGPYISSS HSVSGGQRPV VVVVEQHGSG GPGGPGVGQR VPCLNGGPPG bmy_16311T0/1-505 SHSGSYISSS HSVSGGKMPV VVVVEQHGS- --GGPRVGQS IPCSNGGLPG ENSTTRP00000006147/1-484 SHSGPYISSS HSVSGGKMPV VVVVEQHGS- --GGPRVGQS VPCSNGGLPG 351 400 ENSP00000365465/1-529 KPCPPITSVD KSYGGYEVVG GSSDSYLVPG MTYSKGKIYP VGYFTKENPV ENSBTAP00000028955/1-559 KPCPPITSVD Q-YGSYEVVG GSSNSYLVPG MTYSGGKIYP VGYFTKEGPI bmy_16311T0/1-505 KPCPPITSVD K-YGSYEVVG GSSDSYLVPG MTYIRGKIYP VGHFIKEHPI ENSTTRP00000006147/1-484 KPCPPITSVG K-YGSYEVVG GSSDSYLVPG MTYIRGKIYP VGHFIKEHPI 401 450 ENSP00000365465/1-529 KGSPGVPSFA AGPPISEGKY FSSNPIIPS- --------QS AASSAIAFQP ENSBTAP00000028955/1-559 KGSPGVPSFA AGPPISEGKY FSGNPIIPSH SSSSSNIYQS GASSTVVFQP bmy_16311T0/1-505 KGSPGVPSFA AGAPISEGKY FSSNPIIPSH SSSSSNIYQS GASSAIVFQP ENSTTRP00000006147/1-484 KGSPGVPSFA AGAPISEGKY FSSIPIIPS- --------QS GASSAVVFQP 451 500 ENSP00000365465/1-529 VGTGGVQLCG GGSTGSKGPC SPSSSRVPSS SSISSSSGLP YHPCGSASQS ENSBTAP00000028955/1-559 VGSGGVQPCV VGSSGSKGPC SLSSSGVSSS SSISSSSSSS FHPCGGVSQG bmy_16311T0/1-505 VGSGGVPPYG VGSKGSKEPC SLSSSGVHSS SSLSSSSGSS FHSCGGVSQR ENSTTRP00000006147/1-484 VGSGGVLPYG VGSKGSKEPC SLSSSGVHSS SSLSSSSGSS FQPCGGVSQR 501 550 ENSP00000365465/1-529 PCSPPGTGSF SSSSSSQSSG KIILQPCGSK SSSSGHPCMS VSSLTLTGGP ENSBTAP00000028955/1-559 PCSPPGTGSL SGSSSSLSGG KIILQPCGSK SSAPGHPCIS VSSSTLSGGP bmy_16311T0/1-505 PSSSPGTGSF SGSSSSQSHG EIILQPCGSK SSSSGHSCIS VSSSTLSRGP ENSTTRP00000006147/1-484 PSSSPGTGSF SGSSSSQSHG KIILQPCGSK SSSSGHSCIS VSSSTLSR-R 551 600 ENSP00000365465/1-529 DGSPHPDPSA GAKPCGSSSA GKIPCRSIRD ILAQVKPLGP QLADPEVFLP ENSBTAP00000028955/1-559 NGSPQPDPSA GAKPCGPGNS GKTPCRSIRD ILAQVKPLGP QLADPEVFLP bmy_16311T0/1-505 AGSSQHDPSA GAKPCGFGGS GTIPCHSIRD ILTQVKPLGP QLADPEVFLP ENSTTRP00000006147/1-484 AGSSQHDPSA GAKPCGFGSS GTIPCHSIRD ILTQAKPLGP QLADPEVLLP 601 650 ENSP00000365465/1-529 QGELLNSP ENSBTAP00000028955/1-559 QGDLPNSS bmy_16311T0/1-505 QGELPNSP ENSTTRP00000006147/1-484 QGELPNSP