KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:37:22 2014 Check: 00 .. Name: ENSP00000387006/1-908 Len: 966 Check: 6942 Weight: 1.00 Name: ENSBTAP00000028962/1-899 Len: 966 Check: 2428 Weight: 1.00 Name: ENSTTRP00000011519/1-900 Len: 966 Check: 6416 Weight: 1.00 Name: bmy_15866T0/1-958 Len: 966 Check: 5210 Weight: 1.00 Name: BACU014062/1-873 Len: 966 Check: 3098 Weight: 1.00 // 1 50 ENSP00000387006/1-908 MKSSVAQIKP SSGHDRRENL NSYQRNSSPE DRYEEQERSP RDRDYFDYSR ENSBTAP00000028962/1-899 MKSSVAQIKH SSGHDRRENY NSYQRTSSPE DRYIEQERSP RDRGYFDSSR ENSTTRP00000011519/1-900 MKSSVAQIKH SSSHDRRENY NSYQRTSSPE DRYTEQERSP RDRDYFDYSR bmy_15866T0/1-958 MKSSVAQIKH SSSHDRRENY NSYQRTSSPE DRYTEQERSP RDRDYFDYSR BACU014062/1-873 --------KH SSSHDRRENY NSYQRTSSPE DRYMEQERSP RDRDYFDYSR 51 100 ENSP00000387006/1-908 SDYEHSRRGR SYDSSMESRN RDREKRRERE RDTDRKRSRK SPSPGRRNPE ENSBTAP00000028962/1-899 SDYERSRRER SYDSSMESRS RDREKR--RE RDVDRKRSRK SPSPGRRSPE ENSTTRP00000011519/1-900 SDYEHSRRGR SYDDSMESRS RDREKR--RE RDVDRKRSRK SPSPGRRSPE bmy_15866T0/1-958 SDYEHSRRGR SYDDSMESRS RDREKR--RE RDVDRKRSRK SPSPGRRSPE BACU014062/1-873 SDYEHSRRGR SYDDSMESRS RDREKR--RE RDVDRKRSRK SPSPGRRSPE 101 150 ENSP00000387006/1-908 TSVTQSSSAQ DEPATKKKKD ELDPLLTRTG GAYIPPAKLR MMQEQITDKN ENSBTAP00000028962/1-899 PSVTQSSSAQ DEPTAKKKKE ELDPLLTRTG GAYIPPAKLR MMQEQITDKN ENSTTRP00000011519/1-900 PLVTQSSSAQ DEPTAKKKKE EVDPLLTRTG GAYIPPAKLR MMQEQITDKN bmy_15866T0/1-958 PLVTQSSSAQ DEPTAKKKKE ELDPLLTRTG GAYIPPAKLR MMQEQITDKN BACU014062/1-873 PLVTQSSSAQ DEPTAKKKKE ELDPLLTRTG GAYIPPAKLR MMQEQITDKN 151 200 ENSP00000387006/1-908 ------SLAY QRMSWEALKK SINGLINKVN ISNISIIIQE LLQENIVRGR ENSBTAP00000028962/1-899 ------SLAY QRMSWEALKK SINGLINKVN ISNIGIIIQE LLQENIVRGR ENSTTRP00000011519/1-900 ------SLAY QRMSWEALKK SINGLINKVN ISNIGIIIQE LLQENIVRVR bmy_15866T0/1-958 RHVNITNLAY QRMSWEALKK SINGLINKVN ISNIGIIIQE LLQENIVRGR BACU014062/1-873 RHVNITNLAY QRMSWEALKK SINGLINKVN ISNIGIIIQE LLQENIVRGR 201 250 ENSP00000387006/1-908 GLLSRSVLQA QSASPIFTHV YAALVAIINS KFPQIGELIL KRLILNFRKG ENSBTAP00000028962/1-899 GLLSRSVLQA QSASPIFTHV YAALVAIINS KFPQIGELIL KRLILNFRKG ENSTTRP00000011519/1-900 GLLSRSVLQA QSASPIFTHV YAALVAIINS KFPQIGELIL KRLILNFRKG bmy_15866T0/1-958 GLLSRSVLQA QSASPIFTHV YAALVAIINS KFPQIGELIL KRLILNFRKG BACU014062/1-873 GLLSRSVLQA QSASPIFTHV YAALVAIINS KFPQIGELIL KRLILNFRKG 251 300 ENSP00000387006/1-908 YRRNDKQLCL TASKFVAHLI NQNVAHEVLC LEMLTLLLER PTDDSVEVAI ENSBTAP00000028962/1-899 YRRNDKPLCL TASKFVAHLI NQNVAHEVLC LEMLTLLLER PTDDSVEVAI ENSTTRP00000011519/1-900 YRRNDKPLCL TASKFVAHLI NQNVAHEVLC LEMLTLLLER PTDDSVEVAI bmy_15866T0/1-958 YRRNDKPLCL TASKFVAHLI NQNVAHEVLC LEMLTLLLER PTDDSVEVAI BACU014062/1-873 YRRNDKPLCL TASKFVAHLI NQNVAHEVLC LEMLTLLLER PTDDSVEVAI 301 350 ENSP00000387006/1-908 GFLKECGLKL TQVSPRGINA IFERLRNILH ESEIDKRVQY MIEVMFAVRK ENSBTAP00000028962/1-899 GFLKECGLKL TQVSPRGINA IFERLRNILH ESEIDKRVQY MIEVMFAVRK ENSTTRP00000011519/1-900 GFLKECGLKL TQVSPRGINA IFERLRNILH ESEIDKRVQY MIEVMFAVRK bmy_15866T0/1-958 GFLKECGLKL TQVSPRGINA IFERLRNILH ESEIDKRVQY MIEVMFAVRK BACU014062/1-873 GFLKECGLKL TQVSPRGINA IFERLRNILH ESEIDKRVQY MIEVMFAVRK 351 400 ENSP00000387006/1-908 DGFKDHPIIL EGLDLVEEDD QFTHMLPLED DYNPEDVLNV FKMDPNFMEN ENSBTAP00000028962/1-899 DGFKDHPVIL EGLDLVEEDD QFTHMLPLED DYNPEDVLNV FKMDPNFMEN ENSTTRP00000011519/1-900 DGFKDHPVVL EGLDLVEEDD QFTHMLPLED DYNPEDVLNV FKMDPNFMEN bmy_15866T0/1-958 DGFKDHPVVL EGLDLVEEDD QFTHMLPLED DYNPEDVLNV FKMDPNFMEN BACU014062/1-873 DGFKDHPVVL EGLDLVEEDD QFTHMLPLED DYNPEDVLNV FKMDPNFMEN 401 450 ENSP00000387006/1-908 EEKYKAIKKE ILDEGDTDSN TDQDAGSSEE DEEEEEEEGE EDEEGQKVTI ENSBTAP00000028962/1-899 EEKYRAIKKE ILDEGDSDSN TDQDAGSSEE EEEEEEEEGE EDEEGQKVTI ENSTTRP00000011519/1-900 EEKYKAIKKE ILDEGDSDSN TDQDAGSSEE EEEEEEEEGE EDEEGQTVTI bmy_15866T0/1-958 EEKYKTIKKE ILDEGDSDSN TDQDAGSSEE EEEEEEEEGE EDEEGQTVTI BACU014062/1-873 EEKYKTIKKE ILDEGDSDSN TDQDAGSSEE EEEEEEEEGE EDEEGQTVTI 451 500 ENSP00000387006/1-908 HDKTEINLVS FRRTIYLAIQ SSLDFEECAH KLLKMEFPES QT-------- ENSBTAP00000028962/1-899 HDKTEINLVS FRRTIYLAIQ SSLDFEECAH KLLKMEFPES QT-------- ENSTTRP00000011519/1-900 HDKTEINLVS FRRTIYLAIQ SSLDFEECAH KLLKMEFPEG QT-------- bmy_15866T0/1-958 HDKTEINLVS FRRTIYLAIQ SSLDFEECAH KLLKMEFPEG QTACFLFIES BACU014062/1-873 HDKTEINLVS FRRTIYLAIQ SSLDFEECAH KLLKMEFPEG QT-------- 501 550 ENSP00000387006/1-908 ---------- ---------- ---------- ---------- ---KELCNMI ENSBTAP00000028962/1-899 ---------- ---------- ---------- ---------- ---KELCNMI ENSTTRP00000011519/1-900 ---------- ---------- ---------- ---------- ---KELCNMI bmy_15866T0/1-958 KYIAVTVFKK TNFKLSDKKC FVEKYIYQRV IYINIEAVPM YASKELCNMI BACU014062/1-873 ---------- ---------- ---------- ---------- ---------- 551 600 ENSP00000387006/1-908 LDCCAQQRTY EKFFGLLAGR FCMLKKEYME SFEGIFKEQY DTIHRLETNK ENSBTAP00000028962/1-899 LDCCAQQRTY EKFFGLLAGR FCMLKKEYME SFESIFKEQY DTIHRLETNK ENSTTRP00000011519/1-900 LDCCAQQRTY EKFFGLLAGR FCMLKKEYME SFESIFKEQY DTIHRLETNK bmy_15866T0/1-958 LDCCAQQRTY EKFFGLLAGR FCMLKKEYME SFESIFKEQY DTIHRLETNK BACU014062/1-873 ---------- ---------R FCMLKKEYME SFESIFKEQY DTIHRLETNK 601 650 ENSP00000387006/1-908 LRNVAKMFAH LLYTDSLPWS VLECIKLSEE TTTSSSRIFV KIFFQELCEY ENSBTAP00000028962/1-899 LRNVAKMFAH LLYTDSLPWS VLECIKLSEE TTTSSSRIFV KIFFQELCEY ENSTTRP00000011519/1-900 LRNVAKMFAH LLYTDSLPWS VLECIKLSEE TTTSSSRIFV KIFFQELCEY bmy_15866T0/1-958 LRNVAKMFAH LLYTDSLPWS VLECIKLSEE TTTSSSRIFV KIFFQELCEY BACU014062/1-873 LRNVAKMFAH LLYTDSLPWS VLECIKLSEE TTTSSSRIFV KIFFQELCEY 651 700 ENSP00000387006/1-908 MGLPKLNARL KDETLQPFFE GLLPRDNPRN TRFAINFFTS IGLGGLTDEL ENSBTAP00000028962/1-899 MGLPKLNARL KDETLQPFFE GLLPRDNPRN TRFAINFFTS IGLGGLTDEL ENSTTRP00000011519/1-900 MGLPKLNGRL KDETLQPFFE GLLPRDNPRN TRFAINFFTS IGLGGLTDEL bmy_15866T0/1-958 MGLPKLNGRL KDETLQPFFE GLLPRDNPRN TRFAINFFTS IGLGGLTDEL BACU014062/1-873 MGLPKLNGRL KDETLQPFFE GLLPRDNPRN TRFAINFFTS IGLGGLTDEL 701 750 ENSP00000387006/1-908 REHLKNTPKV IVAQKPDVEQ NKSSPSSSSS ASSSSESDSS DSDSDSSDSS ENSBTAP00000028962/1-899 REHLKNTPKV IVAQKPDVEP DKSSSSSSSS ESSSSESDSS ASDSDSSDSS ENSTTRP00000011519/1-900 REHLKNIPKV IVAQKPDVEP NKSPASSSSP ESSSSESDSS ASDSDSSDSS bmy_15866T0/1-958 REHLKNTPKV IVAQKPDVEP NKSSPSSSSS ASSSSESDSS ASGSDSSDSX BACU014062/1-873 REHLKNTPKV IVAQKPDVEP NKSSPSSSSS ASSSSESDSS ASGSDSSDSS 751 800 ENSP00000387006/1-908 SESSSEESDS SSISSHSSAS ANDVRKKGHG KTRSKEVDKL IRNQQTNDRK ENSBTAP00000028962/1-899 SESSSEESDS SSTSSQSSAS AKNVRKKGHG NHRSKEVDKL IRKQEINDRK ENSTTRP00000011519/1-900 SESSSGES-T SSASSQSSAS DKDVRKKGQG NHRRKEVNKL IRKQHTNDRK bmy_15866T0/1-958 SESSSEESDS SSTGSQSSAS DKDVRKKGQG NHRRKEVNKL IRKQHTNDRK BACU014062/1-873 SESSSEESDS SSTGSQSSAS DKDVRKKGQG NHRRKEVNKL IRKQHTNDRK 801 850 ENSP00000387006/1-908 QKERRQEHGH QETRTERERR SEKHRDQNSS GSNWRDPITK YTSDKDVPSE ENSBTAP00000028962/1-899 QEERRPEHRH QETRTERERR SEKPRERDS- ----RGSGTT YTSDRGIPSA ENSTTRP00000011519/1-900 QEERRPEQRH QETRTERARR SEKPRDRDS- ----KDPVTK YTSDRGLPSE bmy_15866T0/1-958 QEERRPEQRH QETRTERERR SEKPRDRDS- ----RDPVTK YTSDXGLPSE BACU014062/1-873 QEQRRPEQRH QETRTERERR SEKPRDRDS- ----RDPVTK YASDRGLPSE 851 900 ENSP00000387006/1-908 RNNYSRVAND RDQEMHIDLE NKHGDPKKKR GERRNSFSEN EKHTHRIKDS ENSBTAP00000028962/1-899 RNSCSRAVHD RDQEARVDLA RNHGDPEKKR -ERRNSFSEN E-HRHRNRDS ENSTTRP00000011519/1-900 RNSYSRAMKD RDQEMYMDLE HNLGDPRKKR GERRNSFSEN E-HKYRNKDS bmy_15866T0/1-958 RNSYSRAMKD REQEMYMDLE HNLGDPKKKR GERRNSFSEN E-RKYRNKDS BACU014062/1-873 RNSYSRAMKD REQEMYMDLE HNLGDPKKKR GERRNSFSEN E-RKYRNKDS 901 950 ENSP00000387006/1-908 ENFRRKDRSK SKEMNRKHSG SRSDEDRYQN GAERRWEKSS RYSEQSRESK ENSBTAP00000028962/1-899 ENFRRRDRSK SREKNKKHSG SRSEDDRYQN GAERQWEKPS RYSEQSGESK ENSTTRP00000011519/1-900 ENFRRKDRSK SREKDKKHSA SRSDEDRYQN GAERRWEKSS RYSELSRESK bmy_15866T0/1-958 ENFRRKDRSK SREKDKKHSA SRSDEDRYQN GAERRWEKSS QYSEQSRESK BACU014062/1-873 ENFRRKDRSK SREKDKKHSA SRSDEDRYQN GAERRWEKSS QYSEQSRESK 951 1000 ENSP00000387006/1-908 KNQDRRREKS PAKQK- ENSBTAP00000028962/1-899 KSQDRRREKS PTKQK- ENSTTRP00000011519/1-900 KNQDQRREKS PTKQKK bmy_15866T0/1-958 KNQDRRREKS PTKQKK BACU014062/1-873 KNQDRRREKS PTKQKK