KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:37:23 2014 Check: 00 .. Name: ENSP00000359532/1-418 Len: 418 Check: 972 Weight: 1.00 Name: ENSBTAP00000028963/1-418 Len: 418 Check: 6490 Weight: 1.00 Name: ENSTTRP00000001660/1-417 Len: 418 Check: 5307 Weight: 1.00 Name: bmy_16428T0/1-307 Len: 418 Check: 4862 Weight: 1.00 Name: BACU018531/1-418 Len: 418 Check: 6684 Weight: 1.00 // 1 50 ENSP00000359532/1-418 MRLNSSAPGT PGTPAADPFQ RAQAGLEEAL LAPGFGNASG NASERVLAAP ENSBTAP00000028963/1-418 MRLNSSAPGP WVGRTGDPFT QPPSVLERAL LAPGLGNGSG NLSESVPAAP ENSTTRP00000001660/1-417 -HLNSSAPGP RVSQAGDPFL LPPSGLEAAL LAPGFGNSSG NLSEPVPAAP bmy_16428T0/1-307 MDLNSSAPGP RVSQAGDPFL LPPSGLEAAL LALGFGNGSG NLSEPVPAVP BACU018531/1-418 MDLNSSAPGP RVSQAGDPFL LPPSGLEAAL LALDFGNGSG NLSEPVPAVP 51 100 ENSP00000359532/1-418 SSELDVNTDI YSKVLVTAVY LALFVVGTVG NTVTAFTLAR KKSLQSLQST ENSBTAP00000028963/1-418 SSDLDVNTDI YSKVLVTIVY LALFVVGTVG NSVTAFTLAR KKSLQNLQST ENSTTRP00000001660/1-417 SSDLDVNTDI YSKVLVTIVY LALFVVGTVG NSVTAFTLAR KKSLQNLQST bmy_16428T0/1-307 SSDLDVNTDI YSKVLVTIVY VALFVVGTVG NSVTAFTLAR KKSLQNLQST BACU018531/1-418 SSDLDVNTDI YSKVLVTIVY LALFVVGTVG NSVTAFTLAR KKSLQNLQST 101 150 ENSP00000359532/1-418 VHYHLGSLAL SDLLTLLLAM PVELYNFIWV HHPWAFGDAG CRGYYFLRDA ENSBTAP00000028963/1-418 VHYHLGSLAL SDLLILLLAM PVELYNFIWV HHPWAFGDAV CRGYYFLRDA ENSTTRP00000001660/1-417 VHYHLGSLAL SDLLILLLAM PVELYNFIWV HHPWAFGDAV CRGYYFLRDA bmy_16428T0/1-307 VHYHLGSLAL SDLLILLLAM PVELHSFIWV HHPWAFGDAV CRGYYFLRDA BACU018531/1-418 VHYHLGSLAL SDLLILLLAM PVELYNFIWV HHPWAFGDAV CRGYYFLRDT 151 200 ENSP00000359532/1-418 CTYATALNVA SLSVERYLAI CHPFKAKTLM SRSRTKKFIS AIWLASALLA ENSBTAP00000028963/1-418 CTYATALNVA SLSVERYLAI CHPFKAKTLM SRSRTKKFIS AVWLASGLLA ENSTTRP00000001660/1-417 CTYATALNVA SLSVERYLAI CHPFKAKTLM SRSRTKKFIS AIWLASGLLA bmy_16428T0/1-307 CTYATALNVA SLSVERYLAI CHPFKAKTLM SRSRTKKFIS AIWLASGLLA BACU018531/1-418 CTYATALNVA SLSVERYLAI CHPFKAKTLM SRSRTKKFIS AIWLASGLLA 201 250 ENSP00000359532/1-418 VPMLFTMGEQ NRSADGQHAG GLVCTPTIHT ATVKVVIQVN TFMSFIFPMV ENSBTAP00000028963/1-418 VPMLFTMGQQ NRSADGQHPG GLVCTPIVGT ATVKVVIQIN TFMSFVFPMV ENSTTRP00000001660/1-417 VPMLFTMGQQ NRSADGQHPG GLVCTPIVGT AKVKVVIQIN TFMSFVFPMV bmy_16428T0/1-307 VPMLFTMGQQ NRSADGQHPG GLVCTPIVGT AKVKVVIQIN TFMSFVFPMV BACU018531/1-418 VPMLFTMGQQ NRSADGQHPG GLVCTPIVGT AKVKVVIQIN TFMSFVFPMV 251 300 ENSP00000359532/1-418 VISVLNTIIA NKLTVMVRQA AEQGQVCTVG GEHSTFSMAI EPGRVQALRH ENSBTAP00000028963/1-418 VISFLNTVIA NKLTVMVRQA AEPGQVCTVG DQPSSFSMSI EPGRVQALRH ENSTTRP00000001660/1-417 AISVLNTIIA NKLTVMVRQA AEQGQVRTVG DQHSSFSMSI EPGRVQALRH bmy_16428T0/1-307 VISVLNTVIA NKLTVMVRQA AEQGQVCTVG DQHSSFSMSI EPGRVQALRH BACU018531/1-418 VISVLNTVIA NKLTVMVRQA AEQGQVCTVG DQHSSFSMSI EPGRVQALRH 301 350 ENSP00000359532/1-418 GVRVLRAVVI AFVVCWLPYH VRRLMFCYIS DEQWTPFLYD FYHYFYMVTN ENSBTAP00000028963/1-418 GVRVLRAVVI AFVVCWLPYH VRRLMFCYIS DKQWTPFLYD FYHYFYMLTN ENSTTRP00000001660/1-417 GVRVLRAVVI AFVVCWLPYH VRRLMFCYIS DEQWTPFLYD FYHYFYMLTN bmy_16428T0/1-307 GVRVLRT--- ---------- ---------- ---------- ---------- BACU018531/1-418 GVRVLRAVVI AFVVCWLPYH VRRLMFCYIS DEQWTPFLYD FYHYFYMLTN 351 400 ENSP00000359532/1-418 ALFYVSSTIN PILYNLVSAN FRHIFLATLA CLCPVWRRRR KRPAFSRKAD ENSBTAP00000028963/1-418 ALFYVSSTIN PILYNLVSAN FRQIFLSTLA CLCPLGGRRR RGPAFSRKAN ENSTTRP00000001660/1-417 ALFYVSSTIN PVLYNLVSAN FRQIFLSTLA CLCPLWGHRR RRLAFSRKAS bmy_16428T0/1-307 ---------- ---------- ---------- ---------- ---------- BACU018531/1-418 ALFYVSSTVN PVLYNLVSAN FRQTFLATLA CLCPLWGHRR RRPAFSRKAS 401 450 ENSP00000359532/1-418 SVSSNHTLSS NATRETLY ENSBTAP00000028963/1-418 SVSSNHTFSS NVTRETLY ENSTTRP00000001660/1-417 SVSGSHTFSS NVTRETLY bmy_16428T0/1-307 ---------- -------- BACU018531/1-418 SVSGSHTFSS NVTRETLY