KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:37:25 2014 Check: 00 .. Name: ENSP00000377027/1-860 Len: 867 Check: 1795 Weight: 1.00 Name: ENSBTAP00000028967/1-859 Len: 867 Check: 7400 Weight: 1.00 Name: ENSTTRP00000013195/1-858 Len: 867 Check: 1668 Weight: 1.00 Name: bmy_08574T0/1-736 Len: 867 Check: 9652 Weight: 1.00 Name: BACU004055/1-866 Len: 867 Check: 370 Weight: 1.00 // 1 50 ENSP00000377027/1-860 -------MMS IKAFTLVSAV ERELLMGDKE RVNIECVECC GRDLYVGTND ENSBTAP00000028967/1-859 -------MMS TKAFTLVPAI EREQLLSDRD RGLLECVECC GRNLYVGTSD ENSTTRP00000013195/1-858 -------MMS TKAFTLVPAV EREQLMGDRE WVSLECVECC GRNLYVGTSD bmy_08574T0/1-736 -------MMS TKAFTLVPAV EREQLMGDRE RVSLECVECC GRNLYVGTSD BACU004055/1-866 MVRSAADMMS TKAFTLVPAV EREQLMGDRE RVSLECVECC GRNLYVGTSD 51 100 ENSP00000377027/1-860 CFVYHFLLEE RPVPAGPATF TATKQLQRHL GFKKPVNELR AASALNRLLV ENSBTAP00000028967/1-859 CFVYHFLLEE KTLPGGSATF TATRQLHRHL GFKKAVSELR AASALSRLLV ENSTTRP00000013195/1-858 CFVYHFLLEE KTVPGGSATF TATKQLHRHL GFKKPVNELR AASALHRLLV bmy_08574T0/1-736 CFVYRFLLEE KTVPGGSATF TATKQLHRHL GFKKPVNELR AASALHRLLV BACU004055/1-866 CFVYRFLLEE KAVPGGSTTF TATKQLHRHL GFKKPVNELR AASALHRLLV 101 150 ENSP00000377027/1-860 LCDNSISLVN MLNLEPVPSG ARIKGAATFA LNENPVSGDP FCVEVCIISV ENSBTAP00000028967/1-859 LCDGCISLVH MLSLEPVPSG ARIKGATAFA LNENPVSGDP FCVEVCIISV ENSTTRP00000013195/1-858 LCDGCITLVH MLSLEPVPSG ARIKGATAFA LNENPVSGDP FCVEVCIISV bmy_08574T0/1-736 LCDGSITLVH MLSLEPVPSG ARIKGATAFA LNENPVSGDP FCVEVCIISV BACU004055/1-866 LCDSSITLVH MLSLEPVPSG ARIKGATAFA LNENPVSGDP FCVEVCIISV 151 200 ENSP00000377027/1-860 KRRTIQMFLV YEDRVQIVKE VSTAEQPLAV AVDGHFLCLA LTTQYIIHNY ENSBTAP00000028967/1-859 KRRTIQVFLV YEDRVQIVRE VSTPEQPLAV AVDGHFLCLA LTTQYIILNY ENSTTRP00000013195/1-858 KRRTIQVFLV YEDRVQIVRE VSTPEQPLAV AVDGHFLCLA LTTQYIILNY bmy_08574T0/1-736 KRRTIQVFLV YEDRVQIVRE VSTPEQPLAV AVDGHFLCLA LTTQYIILNY BACU004055/1-866 KRRTIQVFLV YEDRVQIVRE VSTPEQPLAV AVDGYFLCLA LTTQYIILNY 201 250 ENSP00000377027/1-860 STGVSQDLFP YCSEERPPIV KRIGRQEFLL AGPGGLGMFA TVAGISQRAP ENSBTAP00000028967/1-859 STGAAQDLFP FCSEERRPIV KRIGRQEFLL AGPGGLGMFA TVAGISQRAP ENSTTRP00000013195/1-858 STGVAQDLFP FCSEEKRPIV KRIGRQEFLL S-PGGLGMFA TVAGISQRAP bmy_08574T0/1-736 STGVAQDLFP FCSEEKRPIV KRIGRQEFLL AGPGGLGMFA TVAGISQRAP BACU004055/1-866 STGVAQDLFP FCSEEKWPIV KRIGRQEFLL AGPGGLGMFA TVAGISQRAP 251 300 ENSP00000377027/1-860 VHWSENVIGA AVSFPYVIAL DDEFITVHSM LDQQQKQTLP FKEGHILQDF ENSBTAP00000028967/1-859 VRWSENVIGA AVCFPYVVAL DDEFITVHSM LDQQQKQTLP FKEGHILQDF ENSTTRP00000013195/1-858 VHWSENVVGA AVCFPYVIAL DSEFITVHSM LDQQQKQTLP FKEGHILQDF bmy_08574T0/1-736 VRWSENVVGA AVCFPYVIAL DNEFITVHSM LDQQQKQTLP FKEGHILQDF BACU004055/1-866 VRWSENVVGA AVCFPYVIAL DSEFITVHSM LDQQQKQTLP FKEGHILQDF 301 350 ENSP00000377027/1-860 EGRVIVATSK GVYILVPLPL EKQIQDLLAS RRVEEALVLA KGARRNIPKE ENSBTAP00000028967/1-859 EGRVIVATSK GVYILVPLPL EKQIQDLLAS HRVEEALVLA KGARRNIPKE ENSTTRP00000013195/1-858 EGRLIVATSK GVYVLVPLPL EKQIQDLLAS RRVEEALVLA KGARRNIPKE bmy_08574T0/1-736 EGRVIVATSK GVYVLVPLPL EKQIQDLLAS RRVEEALILA KGARRNIPKE BACU004055/1-866 EGRVIVATSK GVYVLVPLPL EKQIQDLLAS RRVEEALILA KGARRNIPKE 351 400 ENSP00000377027/1-860 KFQVMYRRIL QQAGFIQFAQ LQFLEAKELF RSGQLDVREL ISLYPFLLPT ENSBTAP00000028967/1-859 KFQVMYRRIL LQAGFIQFAQ LQFLEAKELF RSGQLDVREL ISLYPLLLPT ENSTTRP00000013195/1-858 KFQVMYRRIL QQAGFIQFAQ LQFLEAKELF RSGQLDVREL ISLYPFLLPT bmy_08574T0/1-736 KFQVMYRRIL QQAGFIQFAQ LQFLEAKELF RSGQLDVREL ISLYPFLLPT BACU004055/1-866 KFQVMYRRIL QQAGFIQFAQ LQFLEAKELF RSGQLDVREL ISLYPFLLPT 401 450 ENSP00000377027/1-860 SSSFTRSHPP LHEYADLNQL TQGDQEKMAK CKRFLMSYLN EVRSTEVANG ENSBTAP00000028967/1-859 SSSFTRSHPP LHEFADLNQL TQGDQDKVAK CKRFLMSYLN EVRSTEVANG ENSTTRP00000013195/1-858 SSSFTRSHPP LHEFADLNQL TQGDQEKVAK CKRFLMSYLN EVRSTEVANG bmy_08574T0/1-736 SSSFTRSHPP LHEFADLNQL TQGDQEKVAK CKRFLMRYLN EVRSTEVADG BACU004055/1-866 SSSFTRSHPP LHEFADLNQL TQGDQEKVAK CKRFLMSYLN EVRSTEVANG 451 500 ENSP00000377027/1-860 YKEDIDTALL KLYAEADHDS LLDLLVTENF CLLTDSAAWL EKHKKYFALG ENSBTAP00000028967/1-859 YKEDIDTALL KLYAEADHDS LLDLLVTENF CLLPDSAAWL EKHKKYFALG ENSTTRP00000013195/1-858 YKEDIDTALL KLYTEADHDS LLDLLVTENF CLLTDSAAWL EKHKKYFALG bmy_08574T0/1-736 CKEDIDTALL KLYTEADHDS LLDLLVTENF CLLTDSAAWL EKHKKYFALG BACU004055/1-866 YKEDIDTALL KLYTEADHDS LLDLLVTENF CLLTDSAAWL EKHKKYFALG 501 550 ENSP00000377027/1-860 LLYHYNNQDA AAVQLWVNIV NGDVQDSTRS DLYEYIVDFL TYCLDEELVW ENSBTAP00000028967/1-859 LLYHYNHQDA AAVQLWVSIV NGDIQDSTRS DLYEYIVDFL TYSTDPDLVW ENSTTRP00000013195/1-858 LLYHYNHQDA AAVQLWVSIV NGDIHDSTRS DLYEYIVDFL TYSLDADLVW bmy_08574T0/1-736 LLYHYNHQDA AAVQLWVSIV NGDIHDSTRS DLYEYIVDFL TYSLDPDLVW BACU004055/1-866 LLYHYNHQDA AAVQLWVSIV NGDIHDSTRS DLYEYIVDFL TYSLDPDLVW 551 600 ENSP00000377027/1-860 AYADWVLQKS EEVGVQVFTK RPLDEQQKNS FNPDDIINCL KKYPKALVKY ENSBTAP00000028967/1-859 RHADWVLQRS QEVGVQVFTK RPLDEQQ-SG FNPDDIISCL KKYPQALVKY ENSTTRP00000013195/1-858 QYADWVLQKD PEVGVQVFTK RPVDEQQ-SR FNPDDIISCL KKYPQALVKY bmy_08574T0/1-736 QYADWVLQKN PEVGVQVFTK RPVDEQQ-SR FNPDDIISCL KKYPQALVKY BACU004055/1-866 HYADWVLQKN PEVGVQVFTK RPVDEQQ-SR FNPDDIISCL KKYPQALVKY 601 650 ENSP00000377027/1-860 LEHLVIDKRL QKEEYHTHLA VLYLEEVLLQ RASASGKGAE ATETQAKLRR ENSBTAP00000028967/1-859 LEHLVTERRL QKEEYHTHLA VLYLDEVLQQ RPCTPDKDAE VTETQAKLRR ENSTTRP00000013195/1-858 LEHLVMDRRL QKEGYHTHLA VLYLDEVLQQ RPSASGKDAE VTETQAKLRR bmy_08574T0/1-736 LEHLVTDRRL QKEEYHTHLA VLYLDEVLQQ RPSANGKDAE VTETQAKLRR BACU004055/1-866 LEHLVTDRRL QKEEYHTHLA VLYLDEVLQQ RPSANGKEAE VTETQVKLRR 651 700 ENSP00000377027/1-860 LLQKSDLYRV HFLLERLQGA GLPMESAILH GKLGEHEKAL HILVHELQDF ENSBTAP00000028967/1-859 LLQESDLYRV HFLMDRTRGA GLPLESAILH GKLEQHEEAL HILVHELADF ENSTTRP00000013195/1-858 LLQQSDLYQV HFLLDRIRGA GLPMESAILL GKLEQHEEAL RILVHELADF bmy_08574T0/1-736 LLQKSDLYRV HFLL----GE CISLDKRHRR GR-------- ---------- BACU004055/1-866 LLQKSDLYRV HFLLDRIRGA GLPMESAILH GKLERHEEAL HILVHELADF 701 750 ENSP00000377027/1-860 AAAEDYCLWC SEGRDPPHRQ QLFHTLLAIY LHAGPTAHEL AVAAVDLLNR ENSBTAP00000028967/1-859 PAAEDYCLWR SEGRDPPYRQ RLFHLLLAVY LGPGPAAPAR TVAAVDLLNR ENSTTRP00000013195/1-858 PAAEGYCLWR SEGRAPPYRR RLFQLLLAIY LGPGPSAPEL AMAAVDLLNR bmy_08574T0/1-736 ---------- ------PC-- ---------- ---------- ---------- BACU004055/1-866 PAAEDYCLWR SEGRDPPARQ RLFHLLLAMY LGPGPSAPQL AVAAVDLLNR 751 800 ENSP00000377027/1-860 HATEFDAAQV LQMLPDTWSV QLLCPFLMGA MRDSIHARRT MQVALGLARS ENSBTAP00000028967/1-859 HAVEFDAAQV LQLLPGTWSV QLLRPFLMGA MRDSIHARRT TQVAVGLARS ENSTTRP00000013195/1-858 RATEFDAAQV LQLLPGTWSV QLLCPFLTGA VRDSVHARRT TQWAMGLPKS bmy_08574T0/1-736 ---------- ---------- --LCFFL--- ---------- ---------- BACU004055/1-866 HAAEFDAARV LQLLPGTWSV QLLCPFLTGA VRDSVHARRT TQVAVGLAKS 801 850 ENSP00000377027/1-860 ENLIYTYDKM KLKGSSIQLS DKKLCQICQN PFCEPVFVRY PNGGLVHTHC ENSBTAP00000028967/1-859 ENLIYKYDKM KLKGSSVRLS DKKLCQMCQN PFLEPVFVRY PNGGLVHTHC ENSTTRP00000013195/1-858 ENLISKYDRM KLKGSSVRLS DKKLCQMCRN PFCEPVFVRY PNGGLVHTHC bmy_08574T0/1-736 --------QM KLKGSSVRLS DKKLCQMCQN PFCEPVFVRY PSGGLVHTHC BACU004055/1-866 ENLIYKYDKM KLKGSSVRLS DKKLCQMCQN PFCEPVFVRY PNGGLVHTHC 851 900 ENSP00000377027/1-860 AASRHTNPSS SSPGTRT ENSBTAP00000028967/1-859 AASRHTEPSS PSAGART ENSTTRP00000013195/1-858 AASRHTNPSS PSPGART bmy_08574T0/1-736 AASRHTNPSS PSPGART BACU004055/1-866 AASRHTNPSS PSPGART