KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:37:29 2014 Check: 00 .. Name: ENSTTRP00000002332/1-757 Len: 865 Check: 8511 Weight: 1.00 Name: ENSP00000288602/1-766 Len: 865 Check: 537 Weight: 1.00 Name: bmy_04340T0/1-399 Len: 865 Check: 3842 Weight: 1.00 Name: BACU006736/1-646 Len: 865 Check: 5132 Weight: 1.00 Name: ENSBTAP00000029006/1-781 Len: 865 Check: 7078 Weight: 1.00 // 1 50 ENSTTRP00000002332/1-757 MAALSGGGG- ---------- ---------- ---------- ---------A ENSP00000288602/1-766 MAALSGGGGG GAEPGQALFN GDMEPEAGAG AGAAASSAAD PAIPEEVWNI bmy_04340T0/1-399 MAALSGGGG- ---------- ---------- ---------- --------GA BACU006736/1-646 ---------- ---------- ---------- ---------- ------VWNI ENSBTAP00000029006/1-781 MEPEAGAAA- ---------- ---------- -----SSAAD PAIPEEVWNI 51 100 ENSTTRP00000002332/1-757 EQGQALFNGD MEPEAGAAAS SAADPAIPEE XXXXXXXXXX XXXXXXXXXX ENSP00000288602/1-766 KQMIKLTQEH IEALLDKFGG EHNPPSIYLE ---------- ---------- bmy_04340T0/1-399 EQGQALFNGD MEPEAGAAAS SAADPAIPEE ---------- ---------- BACU006736/1-646 KQMIKLTQEH IEALLDKFGG EHNPPSIYLE ---------- ---------- ENSBTAP00000029006/1-781 KQMIKLTQEH IEALLDKFGG EHNPPSIYLE ---------- ---------- 101 150 ENSTTRP00000002332/1-757 XXXXXXXXXX XXXXAYEEYT SKLDALQQRE QQLLESLGNG TDFSVSSSAS ENSP00000288602/1-766 ---------- ----AYEEYT SKLDALQQRE QQLLESLGNG TDFSVSSSAS bmy_04340T0/1-399 ---------- ----AYEEYT SKLDALQQRE QQLLESLGNG TDFSVSSSAS BACU006736/1-646 ---------- ----AYEEYT SKLDALQQRE QQLLESLGNG TDFSVSSSAS ENSBTAP00000029006/1-781 ---------- ----AYEEYT SKLDALQQRE QQLLESLGNG TDFSVSSSAS 151 200 ENSTTRP00000002332/1-757 TDTVTSSSSS SLSVLPSSLS VFQNPTDVSR SNPKSPQKPI VRVFLPNKQR ENSP00000288602/1-766 MDTVTSSSSS SLSVLPSSLS VFQNPTDVAR SNPKSPQKPI VRVFLPNKQR bmy_04340T0/1-399 TDTVTSSSSS SLSVLPSSLS VFQNPTDVSR SNPKSPQKPI VRVFLPNKQR BACU006736/1-646 TDTVTSSSSS SLSVLPSSLS VFQNPTDVSR SNPKSPQKPI VRVFLPNKQR ENSBTAP00000029006/1-781 TDTVTSSSSS SLSVLPSSLS VFQNPTDVSR SNPKSPQKPI VRVFLPNKQR 201 250 ENSTTRP00000002332/1-757 TVVPARCGVT VRDSLKKALM MRGLIPECCA VYRIQDGEKK PIGWDTDISW ENSP00000288602/1-766 TVVPARCGVT VRDSLKKALM MRGLIPECCA VYRIQDGEKK PIGWDTDISW bmy_04340T0/1-399 TVVPARCGVT VRDSLKKALM MRGLIPECCA VYRIQDGEKK PIGWDTDISW BACU006736/1-646 TV-------- ---------- ---------- ---------- ---------- ENSBTAP00000029006/1-781 TVVPARCGVT VRDSLKKALM MRGLIPECCA VYRIQDGEKK PIGWDTDISW 251 300 ENSTTRP00000002332/1-757 LTGEELHVEV LENVPLTTHN FVRKTFFTLA FCDFCRKLLF QGFRCQTCGY ENSP00000288602/1-766 LTGEELHVEV LENVPLTTHN FVRKTFFTLA FCDFCRKLLF QGFRCQTCGY bmy_04340T0/1-399 LTGEELHVEV LENVPLTTHN FVRKTFFTLA FCDFCRKLLF QGFRCQTCGY BACU006736/1-646 ---------- ---------- -VRKTFFTLA FCDFCRKLLF QGFRCQTCGY ENSBTAP00000029006/1-781 LTGEELHVEV LENVPLTTHN FVRKTFFTLA FCDFCRKLLF QGFRCQTCGY 301 350 ENSTTRP00000002332/1-757 KFHQRCSTEV PLMCVNYDQL DLLFVSKFFE HHPIPQEEAS LAETTLTSGS ENSP00000288602/1-766 KFHQRCSTEV PLMCVNYDQL DLLFVSKFFE HHPIPQEEAS LAETALTSGS bmy_04340T0/1-399 KFHQRCSTEV PLMCVNYDQL DLLFVSKFFE HHPIPQEEAS LAETTLTSGS BACU006736/1-646 KFHQRCSTEV PLMCVNYDQL E--------- ---------- ---------- ENSBTAP00000029006/1-781 KFHQRCSTEV PLMCVNYDQL DLLFVSKFFE HHPIPQEEAS LAETTLPCGS 351 400 ENSTTRP00000002332/1-757 SPSAPPSDSI GPPILTSPSP SKSIPIPQPF RP-DEDHRNQ FGQRDRSSSA ENSP00000288602/1-766 SPSAPASDSI GPQILTSPSP SKSIPIPQPF RPADEDHRNQ FGQRDRSSSA bmy_04340T0/1-399 SPSAPPSDSI GPPILTSPSP SKSIPIPQPF RP-DEDHRNQ FGQRDRSSSA BACU006736/1-646 ---------- -PPILTSPSP SKSIPIPQPF RP-DEDHRNQ FGQRDRSSSA ENSBTAP00000029006/1-781 SPSAPPSDSI GPPILTSPSP SKSIPIPQPF RPADEDHRNQ FGQRDRSSSA 401 450 ENSTTRP00000002332/1-757 PNVHINTIEP VNIDDLIRDQ GFRSDG---- ---------- ---------- ENSP00000288602/1-766 PNVHINTIEP VNIDDLIRDQ GFRGDG---- ---------- ---------- bmy_04340T0/1-399 PNVHINTIEP VNIDDLIRDQ GFRSDGAPLN QLMRCLRKYQ SRTPSPLLHS BACU006736/1-646 PNVHINTIEP VNIDDLIRDQ GFRSDGAPLN QLMRCLRKYQ SRTPSPLLHS ENSBTAP00000029006/1-781 PNVHINTIEP VNIDDLIRDQ GFRSDGAPLN QLMRCLRKYQ SRTPSPLLHS 451 500 ENSTTRP00000002332/1-757 ---------- ------GSTT GLSATPPASL PGSLTNVKAL QKSPGPQRER ENSP00000288602/1-766 ---------- ------GSTT GLSATPPASL PGSLTNVKAL QKSPGPQRER bmy_04340T0/1-399 VPSEIVFDFE PGPVFRG--- ---------- ---------- ---------- BACU006736/1-646 VPSEIVFDFE PGPVFRGSTT GLSATPPASL PGSLTNVKAL QKSPGPQRER ENSBTAP00000029006/1-781 VPSEIVFDFE PGPVFRGSTT GLSATPPASL PGSLSNVKAL QKSPGPQRER 501 550 ENSTTRP00000002332/1-757 KSSSSSEDRN RMKTLGRRDS SDD-EIPDGQ ITVGQRIGSG SFGTVYKAK- ENSP00000288602/1-766 KSSSSSEDRN RMKTLGRRDS SDDWEIPDGQ ITVGQRIGSG SFGTVYKGKW bmy_04340T0/1-399 ---------- ---------- ---------- ---------- ---------- BACU006736/1-646 KSSSSSEDRN RMKTLGRRDS SDDWEIPDGQ ITVGQRIGSG SFGTVYKGKW ENSBTAP00000029006/1-781 KSSSSSEDRN RMKTLGRRDS SDDWEIPDGQ ITVGQRIGSG SFGTVYKGKW 551 600 ENSTTRP00000002332/1-757 HGDVAVKMLN XXXXXXXXXX XXXXXXXXXX KTRHVNILLF MGYSTKPQLA ENSP00000288602/1-766 HGDVAVKMLN VTAPTPQQLQ AFKNEVGVLR KTRHVNILLF MGYSTKPQLA bmy_04340T0/1-399 ---------- ---------- ---------- ---------- ---------- BACU006736/1-646 HGDVAVKMLN VTAPTPQQLQ AFKNEVGVLR KTRHVNILLF MGYSTKPQLA ENSBTAP00000029006/1-781 HGDVAVKMLN VTAPTPQQLQ AFKNEVGVLR KTRHVNILLF MGYSTKPQLA 601 650 ENSTTRP00000002332/1-757 IVTQWCEGSS LYHHLHIIET KFEMIKLIDI ARQTAQGMDY LHAKSIIHRD ENSP00000288602/1-766 IVTQWCEGSS LYHHLHIIET KFEMIKLIDI ARQTAQGMDY LHAKSIIHRD bmy_04340T0/1-399 ---------- ---------- ---------- ---------- ---------- BACU006736/1-646 IVTQWCEGSS LYHHLHIIET KFEMIKLIDI ARQTAQGMDY LHAKSIIHRD ENSBTAP00000029006/1-781 IVTQWCEGSS LYHHLHIIET KFEMIKLIDI ARQTAQGMDY LHAKSIIHRD 651 700 ENSTTRP00000002332/1-757 LKSNNIFLHE DLTVKIGDFG LATVKSRWSG SHQFEQLSGS ILWMAPEVIR ENSP00000288602/1-766 LKSNNIFLHE DLTVKIGDFG LATVKSRWSG SHQFEQLSGS ILWMAPEVIR bmy_04340T0/1-399 ---------- ---------- ---------- ----DNLDGC ---------- BACU006736/1-646 LKSNNIFLHE DLTVKIGDFG LATVKSRWSG SHQFEQLSGS ILWMAPEVIR ENSBTAP00000029006/1-781 LKSNNIFLHE DLTVKIGDFG LATVKSRWSG SHQFEQLSGS ILWMAPEVIR 701 750 ENSTTRP00000002332/1-757 MQDKNPYSFQ SDVYAFGIVL YELMTGQLPY SNINNRDQII FMVGRGYLSP ENSP00000288602/1-766 MQDKNPYSFQ SDVYAFGIVL YELMTGQLPY SNINNRDQII FMVGRGYLSP bmy_04340T0/1-399 ---------- ---------- ---------- ---------- ---------- BACU006736/1-646 MQDKNPYSFQ SDVYAFGIVL YELMTGQLPY SNINNRDQII FMVGRGYLSP ENSBTAP00000029006/1-781 MQDKNPYSFQ SDVYAFGIVL YELMTGQLPY SNINNRDQII FMVGRGYLSP 751 800 ENSTTRP00000002332/1-757 DLSKVRSNCP KAMKRLMAEC LKKKRDERPL FPQILASIEL LARSLPKIHR ENSP00000288602/1-766 DLSKVRSNCP KAMKRLMAEC LKKKRDERPL FPQILASIEL LARSLPKIHR bmy_04340T0/1-399 ---------- ---------- ---------- ---------- ---------- BACU006736/1-646 DLSK------ ---------- ---------- ---ILASIEL LARSLPKIHR ENSBTAP00000029006/1-781 DLSKVRSNCP KAMKRLMAEC LKKKRDERPL FPQILASIEL LARSLPKIHR 801 850 ENSTTRP00000002332/1-757 SASEPSLNRA GFQTEDFSLY ACASPKTPIQ AGGYGAFPVH ---------- ENSP00000288602/1-766 SASEPSLNRA GFQTEDFSLY ACASPKTPIQ AGGYGAFPVH ---------- bmy_04340T0/1-399 ---------- ---------- ---------- ---------- ---------- BACU006736/1-646 SASEPSLNRA GFQTEDFSLY ACASPKTPIQ AGGYDNCGCQ TTRLSKTVHL ENSBTAP00000029006/1-781 SASEPSLNRA GFQTEDFSLY ACASPKTPIQ AGGYGEFAAF K--------- 851 900 ENSTTRP00000002332/1-757 ---------- ----- ENSP00000288602/1-766 ---------- ----- bmy_04340T0/1-399 ---------- ----- BACU006736/1-646 HDELAAASSR AQMLL ENSBTAP00000029006/1-781 ---------- -----