KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:37:32 2014 Check: 00 .. Name: bmy_07861T0/1-1059 Len: 1259 Check: 2979 Weight: 1.00 Name: ENSP00000230993/1-983 Len: 1259 Check: 5037 Weight: 1.00 Name: ENSBTAP00000029024/1-954 Len: 1259 Check: 9193 Weight: 1.00 Name: ENSTTRP00000005256/1-965 Len: 1259 Check: 4405 Weight: 1.00 Name: BACU015940/1-612 Len: 1259 Check: 4159 Weight: 1.00 // 1 50 bmy_07861T0/1-1059 ---------- ---------- ---------- ---------- ---------- ENSP00000230993/1-983 MEMKLPGQEG FEASSAPRNI PSGELDSNPD PGTGPSPDGP SDTESKELGV ENSBTAP00000029024/1-954 --MKLPGQEE SDISSASENV PTGELDSG-- PGS-LSPDGP LDTDSRELEV ENSTTRP00000005256/1-965 TEMKLPDQEE FEVSSACENI PTGELYSG-- PGSGPSPDGP LDTDSREQGV BACU015940/1-612 ---------- ---------- ---------- ---------- ---------- 51 100 bmy_07861T0/1-1059 ---------- ---------- ---------- ---------- ---------- ENSP00000230993/1-983 PKDPLLFIQL NELLGWPQAL EWRETGSSSA SLLLDMGEMP SITLSTHLHH ENSBTAP00000029024/1-954 PKDPPLFIQL NELLGWPHAP EWKETG---- ---------- ---------- ENSTTRP00000005256/1-965 PKDPLPFIQL NELLGWPQAL EWRETGSSPV SPLLNLGEMP SVTLSAPLHH BACU015940/1-612 ---------- ---------- ---------- ---------- ---------- 101 150 bmy_07861T0/1-1059 ---------- ---------- ---------- -----MAKGL VLLDCPAQSL ENSP00000230993/1-983 RWVLFEEKLE VAAGRWSAPH VPTLALPSLQ KLRSLLAEGL VLLDCPAQSL ENSBTAP00000029024/1-954 RWVLFEEKLE VGAGRWSTPH VPTVALPSLQ KLRSLLAKGL VLLDCPALSL ENSTTRP00000005256/1-965 RWLLFEEKLE VGAGRWSAP- VPTVALPSLQ KLCSLMAKGL VLLDCPAQSL BACU015940/1-612 ---------- ---------- ---------- -----MAKGL VLLDCPAQSL 151 200 bmy_07861T0/1-1059 LELTVLEFSR AHPAPPWGIT HPRHRGEIEM QSEEKVHWPL QQVTRVESLS ENSP00000230993/1-983 LELV------ ---------- ---------- ---------- EQVTRVESLS ENSBTAP00000029024/1-954 QELT------ ---------- ---------- ---------- EQVTRVESLS ENSTTRP00000005256/1-965 LELA------ ---------- ---------- ---------- EQVTRAESLS BACU015940/1-612 LELA------ ---------- ---------- ---------- EQVTRVESLS 201 250 bmy_07861T0/1-1059 PELRGQL--- ---RDPRTSS RP-------- ---------- QAPAPAEHQN ENSP00000230993/1-983 PELRGQLQAL LLQRPQHYNQ TTGTRPCWGS THPRKASDNE EAPLREQCQN ENSBTAP00000029024/1-954 PELRGKLKAL LLQRPQHLIQ TPCTGPCWGS AHPREASQEE EAPLKEQHQN ENSTTRP00000005256/1-965 PELRGQL--- ---RPPHLTQ TTGTSPC-GA ASPREASYEE EAPLKGQYQN BACU015940/1-612 PELRGQL--- ---RDPRTSS RP-------- ---------- QAPAPAE--- 251 300 bmy_07861T0/1-1059 PLRQKLPPGA EAGAVLAGEL GFLEQPVGVF V--------- ---------- ENSP00000230993/1-983 PLRQKLPPGA EAGTVLAGEL GFLAQPLGAF VRLRNPVVLG SLTEVSLPSR ENSBTAP00000029024/1-954 PLRQKFAAGA EAGAVLAGQL GFLEQPLGVF VRLRDPVVLG PLIEVPLPSR ENSTTRP00000005256/1-965 PLRQKLPPGA EAGSVLAGEL GFLEQPVGVF VRLRDPVVLG PLTEVPLPSR BACU015940/1-612 ---------- ---------- ---------- ---------- ---------- 301 350 bmy_07861T0/1-1059 FFGLLLGPPT QGRGYHEMGR AVAILLSDPQ FQWSVRWATN FHDLLAALDA ENSP00000230993/1-983 FFCLLLGPCM LGKGYHEMGR AAAVLLSDPQ FQWSVRRASN LHDLLAALDA ENSBTAP00000029024/1-954 FFCLLLGPPT LGRGYHEMGR AVAILLSDLQ FQWRVRRASS LHDLLAALDA ENSTTRP00000005256/1-965 FFCLLLGPPT QGRGHHEMGQ AVAILLSDPQ FQWSVRWATN FHDLLAALDA BACU015940/1-612 ---------- ---------- ---------Q FQWSVRWATN FHDLLAALDA 351 400 bmy_07861T0/1-1059 FLEEVTVLPL GRWDPTAQIP PPKCLPSEHK RSFPKGLGSS STVEEGQWGR ENSP00000230993/1-983 FLEEVTVLPP GRWDPTARIP PPKCLPSQHK R-LPSQQREI RGPAVPRLTS ENSBTAP00000029024/1-954 FLEEVTVLPP GRWDPTARIP PPKCLPSEHK R-LPSQLRVA KGPSVRRRTP ENSTTRP00000005256/1-965 FLEEVTVLPL GRWDPTAQIT PPKCLPSENK R-LPSQLWEP KSPSARRRTP BACU015940/1-612 FLEEVTVLPL GRWDPTAQIP PPKCLPSEHK R-LPSQLWEP KGPSARRRTP 401 450 bmy_07861T0/1-1059 GGDRKGADLS SAGPLCRCET LNLPLPEPGF HSWCRELRRR VAVWPGILSQ ENSP00000230993/1-983 AEDRHRHGPH AHSP------ ---------- -----ELQRT GRLFGGLIQD ENSBTAP00000029024/1-954 AEDRHGRRQH AANP------ ---------- -----ELRRT GRLFGGLVQD ENSTTRP00000005256/1-965 AEDRHGRGPH VASP------ ---------- -----ELRRT GRL---LVQD BACU015940/1-612 AEDRHGRGPH AASP------ ---------- -----ELRRT VRL---LVQD 451 500 bmy_07861T0/1-1059 LGFPLSSGSP RNCGSPRAPL PGEGPRLRTG TAAGRTRPAR SCGGLAGEAS ENSP00000230993/1-983 ---------- ---------- ---------- ---------- ----VRRKVP ENSBTAP00000029024/1-954 ---------- ---------- ---------- ---------- ----VRRKAS ENSTTRP00000005256/1-965 ---------- ---------- ---------- ---------- ----VRQKAS BACU015940/1-612 ---------- ---------- ---------- ---------- ----VRRKAS 501 550 bmy_07861T0/1-1059 WGGSEGSCPG RGEESHGPRG VRSLWGAGEA HLAPGTWDAG TWITDDPRAG ENSP00000230993/1-983 W------YPS DFLDALHLQC FSAVL---YI YLAT------ --VTNAITFG ENSBTAP00000029024/1-954 W------YPS DFLDALHPQC FSAVL---YI YLAT------ --ITNAITFG ENSTTRP00000005256/1-965 W------YPK DFLDALHPQC FSAVL---YI YLVT------ --VTNAITFG BACU015940/1-612 W------YPS DFLDALRPQC FSAVL---CV YLAT------ --VTNAITFG 551 600 bmy_07861T0/1-1059 GSLSRTCAGR PRGTPATSWT PCTPSASRPC SAFTWPPSLT PSLSEVCWEK ENSP00000230993/1-983 GLLGDATDG- ---------- ---------- ---------- ---------- ENSBTAP00000029024/1-954 GLLGEATDG- ---------- ---------- ---------- ---------- ENSTTRP00000005256/1-965 GLLGEATDG- ---------- ---------- ---------- ---------- BACU015940/1-612 GLLGEATDS- ---------- ---------- ---------- ---------- 601 650 bmy_07861T0/1-1059 PPTGVLESFL GTAVAGAAFF LMAGQPLTIL SSTGPVLVFE HLLFSFSRDH ENSP00000230993/1-983 -AQGVLESFL GTAVAGAAFC LMAGQPLTIL SSTGPVLVFE RLLFSFSRDY ENSBTAP00000029024/1-954 -AQGVLESFL GTAVTGAAFC LMAGQPLTIL SSTGPVLVFE RLLFSFSRDH ENSTTRP00000005256/1-965 -AQGVLESFP GAALTGAAFC LMASQPLTIL SSTGPVLVFE HLLFSFSRDH BACU015940/1-612 -AQGVLESFL GTAVAGAAFF LMAGQPLTIL SSTGPVLVFE HLLFSFSRDH 651 700 bmy_07861T0/1-1059 SLDYLPFRLW VGIWVATFCL VLVATEASVL VRYFTRFTEE GFCALISLIF ENSP00000230993/1-983 SLDYLPFRLW VGIWVATFCL VLVATEASVL VRYFTRFTEE GFCALISLIF ENSBTAP00000029024/1-954 SLDYLPFRLW VGIWVAIFCL VLVATEASVL VRYFTRFTEE GFCALISLIF ENSTTRP00000005256/1-965 SLDYLPFCLW VGIWVATFCL VLVATEASVL VRYFTHFTEE GFCALISLVF BACU015940/1-612 SLDYLPFCLW VGIWVATFCL VLVAMEASVL VLYFTHFTEE GFCALISLIF 701 750 bmy_07861T0/1-1059 IYDAVGKMLT LTRAYPIQRP GSPAYG--CQ YSDPGGPAIC YGCRSPV--- ENSP00000230993/1-983 IYDAVGKMLN LTHTYPIQKP GSSAYGCLCQ YPGPGGNESQ WIRTRPKDRD ENSBTAP00000029024/1-954 IYDAVAKMLT LTHAYPIQRP GSPTYGCLCQ YPDPGGNESQ WTSTNPKDRD ENSTTRP00000005256/1-965 IYDAMGKMLT LTHAYPIQRP GSPAYG--CQ YTDPGGNESQ WTSTKPKDRD BACU015940/1-612 IYDAVGKMLT LTHAYPIQRP GSPACG--CQ YSDPGGNESQ WTSTKPKDRD 751 800 bmy_07861T0/1-1059 -LCTQSQWTS VDIYFTAHNP ILDQLSTQDL GLVNASLLPP PECARQGGHP ENSP00000230993/1-983 DIVSM----- ---------- --------DL GLINASLLPP PECTRQGGHP ENSBTAP00000029024/1-954 DILSM----- ---------- --------DL GLVNASLLPP PECAQRGGHP ENSTTRP00000005256/1-965 DIFSV----- ---------- --------DL GLVNASLLSP PECARQGGHP BACU015940/1-612 GIFSVSQWTS VDIYFTAHNP ILDHLSTQDL GLVNASLLPP PECTRQGGHP 801 850 bmy_07861T0/1-1059 RGPGCHTVPD IAFFSILLFV TSFLFAMALK HVKTSRFFPS MVCKMLRDFF ENSP00000230993/1-983 RGPGCHTVPD IAFFSLLLFL TSFFFAMALK CVKTSRFFPS VVRKGLSDFS ENSBTAP00000029024/1-954 RGPGCHTVPD IAFFSILLFL TSFLFAMALK HVKTSRFFPS VVRKMLGDFS ENSTTRP00000005256/1-965 HGPGCHTVPD IAFFSILFFV TSFLFAMALK HVKTSCFFPS MVCKMLGDFF BACU015940/1-612 HGPGCHTVPD IAFFSILLFI TSFLFSMALK HVKTSRFFPS MVCKMLGDFF 851 900 bmy_07861T0/1-1059 SVLAILLGCG LDAFLGLAML KLTVPREFKL CTYRLLPPSI QCLRACGGVG ENSP00000230993/1-983 SVLAILLGCG LDAFLGLATP KLMVPREFK- ---------- ---------- ENSBTAP00000029024/1-954 SVLAILLGCG LDAFLGLATP KLMVPREFK- ---------- ---------- ENSTTRP00000005256/1-965 SVLAILRGCG LDAFLGLPTP KLTVPREF-- ---------- ---------- BACU015940/1-612 SVLAVLLGCG LDAFLGLATL KLTVPREFK- ---------- ---------- 901 950 bmy_07861T0/1-1059 GMRGGRCGRV PRLECAGEPT LPGRGWLVSL FGANPWWLSV AATLPALLLS ENSP00000230993/1-983 ---------- --------PT LPGRGWLVSP FGANPWWWSV AAALPALLLS ENSBTAP00000029024/1-954 ---------- --------PT LPGRGWLVSP FGANPWWLSV AAALPALVLS ENSTTRP00000005256/1-965 ---------- --------PT LPGHGWLVLP FGANPWWLSV AAALPALLLS BACU015940/1-612 ---------- --------PT LPGRGWLVSP FGANPWWLSV AAALPALLLS 951 1000 bmy_07861T0/1-1059 ILIFMDQQIT GVIPNCTEYR LRVRPAGSLA QGTGAPGWGP GSPSPTPEDR ENSP00000230993/1-983 ILIFMDQQIT AVILNRMEYR LQ-------- ---------- ---------- ENSBTAP00000029024/1-954 ILIFMDQQIT GVILNRAEYR LR-------- ---------- ---------- ENSTTRP00000005256/1-965 ILIFMDQQIT GVILNRTEYR LQ-------- ---------- ---------- BACU015940/1-612 ILIFMDQQIT GVIPNCTEYR LR-------- ---------- ---------- 1001 1050 bmy_07861T0/1-1059 GLRSGLASSS LPHRYLQKGA GFHLDLLCVA VLMLLTSALG LPWCVSATVI ENSP00000230993/1-983 ---------- -------KGA GFHLDLFCVA VLMLLTSALG LPWYVSATVI ENSBTAP00000029024/1-954 ---------- -------KGA GFHLDLFCVA VLMPFTSALG LPWYVSATVI ENSTTRP00000005256/1-965 ---------- -------KGA GFHLDLLCVS VLMLLTSALG LPWYVSATVI BACU015940/1-612 ---------- -------KGA GFHLDLLRVA VLMRLTSALG LPWCVSATVI 1051 1100 bmy_07861T0/1-1059 SLAHMDSLRR ESRACAPGEA PSFLGIREQR PTGLAVFILT GISIFLAS-- ENSP00000230993/1-983 SLAHMDSLRR ESRACAPGER PNFLGIREQR LTGLVVFILT GASIFLAPVL ENSBTAP00000029024/1-954 SLAHMDSLRR ESRACAPGEA PSFLGIREQR LTGLAVFILT GISIFLAPIL ENSTTRP00000005256/1-965 SLAHMDSLWR ESRACVPGEA PSFLGIREQR PTGLAVFILT RISIFLAPIL BACU015940/1-612 SLAHMDSLRR ASRACAPGEA PSFLGIREQR PTGLAVFILT GISIFLAPVL 1101 1150 bmy_07861T0/1-1059 -FIPMPLLYG IFLYMGVTAI SSIQFTKRVQ LLLMPAKHQP DLLLLRHVPL ENSP00000230993/1-983 KFIPMPVLYG IFLYMGVAAL SSIQFTNRVK LLLMPAKHQP DLLLLRHVPL ENSBTAP00000029024/1-954 KFIPMPLLYG IFLYMGVTAI SSIQFTKRVQ LLLIPAKHQP DLLFLRHVPL ENSTTRP00000005256/1-965 KFIPMPLLYG IFLYMGVTAI SSIQFTKRVQ LLLMPAKHQP DLLLLGHVPL BACU015940/1-612 KL-------- ---------- ---------- ---------- ---------- 1151 1200 bmy_07861T0/1-1059 RRVHFFTAIQ LACLGLLWII KSTPAAIIFP LM-------- -----VTRGR ENSP00000230993/1-983 TRVHLFTAIQ LACLGLLWII KSTPAAIIFP LMLLGLVGVR KALERVFSPQ ENSBTAP00000029024/1-954 SRVHLFTAIQ LACLGLLWII KSTPAAIIFP IMLLGLVGVR KALEWVFSPQ ENSTTRP00000005256/1-965 RRVQFFTAIQ LACLGLLWII KSTPAAIIFL LMLLDLVGVR KALEWVFSPQ BACU015940/1-612 ---------- ---------- ---------- ---------- ---------- 1201 1250 bmy_07861T0/1-1059 ELLWLDEPMP ETERSITEKG LEPEYSFSGS DNEDVSSRMG PLRRTGQGSG ENSP00000230993/1-983 ELLWLDELMP EEERSIPEKG LEPEHSFSGS DSEDSELMYQ PKAPE----- ENSBTAP00000029024/1-954 ELLWLDELMP EKERSIPEKG VEPEYSFSGN DSEDSELMYQ PKAPE----- ENSTTRP00000005256/1-965 ALLWLDEPMP E-ERSITEKE LEPEYSFSGS DNEDSELMYQ P-APE----- BACU015940/1-612 ---------P ---------- ---------- ---------- ---------- 1251 1300 bmy_07861T0/1-1059 REVFSRSCP ENSP00000230993/1-983 ---INISVN ENSBTAP00000029024/1-954 ---INISVN ENSTTRP00000005256/1-965 ---INISVN BACU015940/1-612 ---------