KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:37:33 2014 Check: 00 .. Name: ENSP00000255390/1-301 Len: 305 Check: 7091 Weight: 1.00 Name: ENSBTAP00000029032/1-305 Len: 305 Check: 3940 Weight: 1.00 Name: ENSTTRP00000000063/1-210 Len: 305 Check: 7019 Weight: 1.00 Name: bmy_20700T0/1-274 Len: 305 Check: 3470 Weight: 1.00 Name: BACU005855/1-266 Len: 305 Check: 1082 Weight: 1.00 // 1 50 ENSP00000255390/1-301 MAMLVLVPGR VMRPLGGQLW RFLPRGLEFW GPAEGTARVL LRQFCARQAE ENSBTAP00000029032/1-305 MAGLLLAPGR IMRLPGSQLW RLFPRGFGVW GPGKETASVL LGRLCARPEE ENSTTRP00000000063/1-210 ---------- ---------- ---------- ---------- ---------- bmy_20700T0/1-274 MAGLLRAPGR IMRLPGGKLW SLLPRGLGVW GPGEGTAKVM LGRLRAPPEE BACU005855/1-266 ---------- ---------- ---------- ---------M LGRLRAPPEE 51 100 ENSP00000255390/1-301 AWRASGRPGY CLGTRPLSTA RPPPPWSQ-- --KGPGDSTR PSKPGPVSWK ENSBTAP00000029032/1-305 AWRASGLAAC CLGSRPLSTA MPPPPGSSGP EWKGSGDPMR PSKPGPVSWK ENSTTRP00000000063/1-210 ---------- ---------- ---------- ---------- -----PVSWK bmy_20700T0/1-274 AWRASGLAGS CLRCRLLSTA RPPPPGSSGP EPEGGGDPTR PSQPRPVSWK BACU005855/1-266 AWRASGLAGS CLRCRLLSTA RPPPPGSSGP EPKGGGDPTR PSQPRPVSWK 101 150 ENSP00000255390/1-301 SLAITFAIGG ALLAGMKHVK KEKAEKLEKE RQRHIGKPLL GGPFSLTTHT ENSBTAP00000029032/1-305 SLAVTFAIGG ALLAGMKYFK KEKTEKLEKE RHRSIGKPLL GGPFSLTTHT ENSTTRP00000000063/1-210 SLAITFAIGG VLLAGMKYFK KEKTEKLEKE RQRSIGKPLL GGPFSLTTHT bmy_20700T0/1-274 SLAITFAIGG VLLAGMKYFK KEKTEKLEKE RQRSIGKPLL GGPFSLTTHT BACU005855/1-266 SLAITFAIGG VLLAGMKYFK KEKTEKLEKE RQRSIGKPLL GGPFSLTTHT 151 200 ENSP00000255390/1-301 GERKTDKDYL GQWLLIYFGF THCPDVCPEE LEKMIQVVDE IDSITTLPDL ENSBTAP00000029032/1-305 GEPKTDKDYL GQWVLIYFGF THCPDICPEE LEKMIQVVDE IDSIPTLPNL ENSTTRP00000000063/1-210 GEPKTDKDYL GQWVLIYFGF THCPDICPEE LEKMIQVVDE IDSIPTLPDL bmy_20700T0/1-274 GEPKTDKDYL GQWVLIYFGF THCPDICPEE LEKMIQVVDE I--------- BACU005855/1-266 GEPKTDKDYL GQWVLIYFGF THCPDICPEE LEKMIQVVDE IDSIPTLPDL 201 250 ENSP00000255390/1-301 TPLFISIDPE RDTKEAIANY VKEFSPKLVG LTGTREEVDQ VARAYRVYYS ENSBTAP00000029032/1-305 TPLFITIDPE RDTKEAIANY VKEFSPKLIG LTGTKEEIDQ VARAFRVYYS ENSTTRP00000000063/1-210 TPLFITIDPE RDTKEAIANY VKEFSPKLIG LTGTKEEIDQ VARAFRVYYS bmy_20700T0/1-274 ---------- ---------- --EFSPKLIG LTGTKEEIDQ MARAFRVYYS BACU005855/1-266 TPLFITIDPE RDTKEAIANY VKEFSPKLIG LTGTKEEIDQ MARAFRVYYS 251 300 ENSP00000255390/1-301 PGPKDEDEDY IVDHTIIMYL IGPDGEFLDY FGQNKRKGEI AASIATHMRP ENSBTAP00000029032/1-305 PGPKDEDEDY IVDHTIIMYL IGPDGEFLDY FGQNKKNAEI AGSIAAHMRT ENSTTRP00000000063/1-210 PGPKDEDEDY IVDHTIIMYL IGPDGEFLDY FGQNKKNAEI AGLIAAHMRE bmy_20700T0/1-274 PGPKDEDEDY IVDHTIIMYL IGPDGEFLDY FGQNKKNAEI AGSIAAHMRE BACU005855/1-266 PGPKDEDEDY IVDHTIIMYL IGPDGEFLDY FGQNKKNAEI AGSIAAHMRE 301 350 ENSP00000255390/1-301 YRKKS ENSBTAP00000029032/1-305 HRKKS ENSTTRP00000000063/1-210 HRKKS bmy_20700T0/1-274 HRKKS BACU005855/1-266 HRKKS