KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:37:33 2014 Check: 00 .. Name: ENSP00000363416/1-357 Len: 360 Check: 7748 Weight: 1.00 Name: ENSBTAP00000029039/1-357 Len: 360 Check: 696 Weight: 1.00 Name: bmy_02036T0/1-339 Len: 360 Check: 8553 Weight: 1.00 Name: ENSTTRP00000011844/1-356 Len: 360 Check: 7336 Weight: 1.00 // 1 50 ENSP00000363416/1-357 MRRTGP--EE EACGVWLDAA ALKRRKVQTH LIKPGTKMLT LLPGERKANI ENSBTAP00000029039/1-357 MRRRGPEKEE EACGVWLDAA ALKRRKTQTQ LIKSSTKMLT LLPGERKAKI bmy_02036T0/1-339 ---MGK-KKE -----W---- ------AMTH LIKSSTKMLT LFPGERKANI ENSTTRP00000011844/1-356 MRRRGP-KEE EACGVWLDAA ALKRRKTQTH LIKSSTKMLT LFPGERKANI 51 100 ENSP00000363416/1-357 YFTQRRAPST GIHQRSIASF FTLQPGKTNG SDQKSVSSHT ESQINKESKK ENSBTAP00000029039/1-357 SFTQRSCPSA GTRQTSIASF LTSQQGKTNG ADQRSVSSHT ESQTNKESKE bmy_02036T0/1-339 SFTQRSRPPA GTRQTSIASF FTLQPGKTNG GDRRSVSSHI ESQTNKESKE ENSTTRP00000011844/1-356 SFTQRSRPPA GTRQTSIASF FTLQPGKTNG GDQRSV-SHI ESQTNKESKE 101 150 ENSP00000363416/1-357 NATQLDHLIP GLAHDCMASP LATSTTADIQ EAGLSPQSLQ TSGHHRMKTP ENSBTAP00000029039/1-357 DATQLEHLTQ GLRADFMAPP LATSTPADIQ EARLSPQSLK ASCQHGIGTP bmy_02036T0/1-339 DATQLDHLIQ GLGDDCMAPP LATSTPADIQ EARLSPQPFQ ASYHHGIGSP ENSTTRP00000011844/1-356 DATQLDHLIQ GLGDDCMAPP LATSTPADIQ EARLSPQSFQ ASHHHGIGSP 151 200 ENSP00000363416/1-357 FSTELSLLQP DTPDCAGDSH TPLAFSFTED LESSCLLDRK EEKGDSARKW ENSBTAP00000029039/1-357 YLTVPCLFRP DTSVCAGASK ASLACSFAHD LESSCLLDQK EGE-DSSCER bmy_02036T0/1-339 CVTVLSLFQP DTFVCAGEGK ASLACSFTQD LESSCLLDQK EEE-DSSWKR ENSTTRP00000011844/1-356 CVTVLSLFQP DTFVCAGESK ASLPCSFTQD LESSCLLDQK EEE-DSSWKR 201 250 ENSP00000363416/1-357 EWLHESKK-N YQSMEKHTKL PGDKCCQPLG KTKLERKVSA KENRQAPVLL ENSBTAP00000029039/1-357 EWLQGSKKNN YQSVERHSKT TGHKGHQLLD KTNLE-NVSA KRSRQAPV-L bmy_02036T0/1-339 EWPHGSKKKN YQNVERHSKT PGHKGHQLLD KTNLE-KVSA KRNRQAPILL ENSTTRP00000011844/1-356 EWPYGSKKKN YQNVERHSKT PGHKGHQLLD KTNLE-KVSA KRNRQAPILL 251 300 ENSP00000363416/1-357 QTYRESWNGE NIESVKQSRS PVSVFSWDNE KNDKDSWSQL FTEDSQGQRV ENSBTAP00000029039/1-357 QTYKDSRRGA NMKAVKQSSC PIPGFSWDSE RNDKDSWSQL FTEDSQGQRV bmy_02036T0/1-339 QTYEDSWSGA NKEAVKQSPC SIPVFSWDSE KNDKDSWSQL FTEDSQGQRV ENSTTRP00000011844/1-356 QTYQDSWSGA NKEAVKQSPC PIPVFSWDSE KNDKDSWSQL FTQDSQGQRV 301 350 ENSP00000363416/1-357 IAHNTRAPFQ DVTNNWNWDL GPFPNSPWAQ CQEDGPTQNL KPDLLFTQDS ENSBTAP00000029039/1-357 IAHNSRAPFR DVTNDQNQGY GRVPNSLWAQ CQDRTTQFNL QPDSLFTQDS bmy_02036T0/1-339 IAHNSRAPFR DVTNDRNQGL GQLPNSPWAQ CQDRTTQLNL QPDLLFTQDS ENSTTRP00000011844/1-356 IAHNSRAPFR DVTNDQNQGL GQLPNSSWAQ CQDRTTQLNL QTDLLFTQDS 351 400 ENSP00000363416/1-357 EGNQVIRHQF ENSBTAP00000029039/1-357 EGNQVIRHQA bmy_02036T0/1-339 EGNQVIRHQV ENSTTRP00000011844/1-356 EGNQVIRHQV