KEY:
ENSP* - Homo sapiens (Human)
ENSBTA* - Bos taurus (Cow)
ENSTTR* - Tursiops truncatus (Dolphin)
bmy_* - Balaena mysticetus (Bowhead whale)
BACU* - Balaenoptera acutorostrata (Minke whale)
Copy from below the line for a valid .msf file.
----------------------------------------------------------------------------------
NoName MSF: 5 Type: P Thu May 15 17:37:34 2014 Check: 00 ..
Name: ENSP00000323148/1-563 Len: 564 Check: 4450 Weight: 1.00
Name: ENSBTAP00000029042/1-563 Len: 564 Check: 5462 Weight: 1.00
Name: ENSTTRP00000011673/1-561 Len: 564 Check: 5342 Weight: 1.00
Name: bmy_13981T0/1-408 Len: 564 Check: 762 Weight: 1.00
Name: BACU012099/1-351 Len: 564 Check: 4031 Weight: 1.00
//
1 50
ENSP00000323148/1-563 MMTAESREAT GLSPQAAQEK DGIVIVKVEE EDEEDHMWGQ DSTLQDTPPP
ENSBTAP00000029042/1-563 MMTAESREAT GLSPQAAQEK DGIVIVKVEE EDEEEHMWGQ DASLQESPPP
ENSTTRP00000011673/1-561 MMTAESREAT GLSPHAAQEK DGIVIVKVEE EDEEEHVWGQ DASLQESPPP
bmy_13981T0/1-408 MMTAESREAT GLSPHAAQEK DGIVIVKVEE EDEEEHMWGQ DASLQESPPP
BACU012099/1-351 ---------- ---------- ---------- ---------- ----------
51 100
ENSP00000323148/1-563 DPEIFRQRFR RFCYQNTFGP REALSRLKEL CHQWLRPEIN TKEQILELLV
ENSBTAP00000029042/1-563 DPEVFRQRFR HFCYQNTFGP REALSRLKEL CHQWLRPEIH TKEQILELLV
ENSTTRP00000011673/1-561 DPEIFRQRFR HFCYQNTFGP REALSRLKEL CHQWLRPEIN TKEQILELLV
bmy_13981T0/1-408 DPEIFRQRFR HFCYQNTFGP REALSRLKEL CHQWLRPEIN TKEQIVELLV
BACU012099/1-351 ---------- ---------- ---------- ---------- ----------
101 150
ENSP00000323148/1-563 LEQFLSILPK ELQVWLQEYR PDSGEEAVTL LEDLELDLSG QQVPGQVHGP
ENSBTAP00000029042/1-563 LEQFLSILPR ELQAWLQEYR PDSGEEAVTL LEDLELDLSG QQVPGQVHGP
ENSTTRP00000011673/1-561 LEQFLSILPK ELQVWLQEYR PDSGEEAVTL LEDLELDLSG QQVPGQVHGP
bmy_13981T0/1-408 LEQFLSILPK ELQVWLQEYR PDSGEEAVTL LEDLELDLSG QQVPGQVHGP
BACU012099/1-351 ---------- ---------- ---------- ---------- ----------
151 200
ENSP00000323148/1-563 EMLARGMVPL DPVQESSSFD LHHEATQSHF KHSSRKPRLL QSRALPAAHI
ENSBTAP00000029042/1-563 EMLARGMVPL DPVQESSSFD LPHEPTQSHF KHSSRKPRLL QPRALPATHV
ENSTTRP00000011673/1-561 EMLARGMVPL DPVQESSSFD LPHEATQSHF KHSSRKPRLL QPRALPATHV
bmy_13981T0/1-408 EMLARGMVPL DPVQESSSFD FPHEATQSHF KHSSRKPRLL QPRALPATHV
BACU012099/1-351 ---------- ---------- ---------- ---------- ----------
201 250
ENSP00000323148/1-563 PAPPHEGSPR DQAMASALFT ADSQAMVKIE DMAVSLILEE WGCQNLARRN
ENSBTAP00000029042/1-563 PAPHPEGAPR DQAMASALFS ADSQAMVKIE DMAVSLILEE WGCQNLARRN
ENSTTRP00000011673/1-561 PAPQHEGGPR DQAMASALFS ADSQAMVKIE DMAVSLILEE WGCQNLARRN
bmy_13981T0/1-408 PAPHHEGGPR DQAMASALFS ADSQAMVKIE DMAVSLILEE WGCQNLARRN
BACU012099/1-351 ---------- ---MASALFS ADSQAMVKIE DMAVSLILEE WGCQNLARRN
251 300
ENSP00000323148/1-563 LSRDNRQENY GSAFPQGGEN RNENEESTSK AETSEDSASR GETTGRSQKE
ENSBTAP00000029042/1-563 LNRDTRQENY GNVISQGCEN RNENEESTSK AESAEDSASR GETAGKFQKD
ENSTTRP00000011673/1-561 LNRDTRQENY GNVISQGCE- --KNEESTSK AEIAEDSASH GETTGKFQKD
bmy_13981T0/1-408 LNRDTRQENY GNVISQGCEN RNENEESTSK AEIAEDSASH GETTGKFQKD
BACU012099/1-351 LNRDARQENY GNVISQGCEN RNENEESTSK AEIAEDSASH GETTGKFQKD
301 350
ENSP00000323148/1-563 FGEKRDQEGK TGERQQKNPE EKTRKEKRDS GPAIGKDKK- TITGERGPRE
ENSBTAP00000029042/1-563 VGEKREQQGR VVERQQRNPE EKAGKEKRDS GPATVKEKK- PSTGERGPRE
ENSTTRP00000011673/1-561 FGEKRDQQGR VVERQQRNPE EKTGKEKRDP GPATVKEKKN PSTGERGPRE
bmy_13981T0/1-408 FGEKREQQGR VVERQQRNPE EKTGKEKRDP GPATVKEKKN PSTGERGPRE
BACU012099/1-351 FGEKREQQGR VVERQQRNPE EKTGKEKRDP GPATVKEKKN PSTGERGPRE
351 400
ENSP00000323148/1-563 KGKGLGRSFS LSSNFTTPEE VPTGTKSHRC DECGKCFTRS SSLIRHKIIH
ENSBTAP00000029042/1-563 KGKGLGRSFS LSSNFTTTEE VPTGTKAHRC DECGKCFTRS SSLIRHKIIH
ENSTTRP00000011673/1-561 KGKGLGRSFS LSSNFNTPEE VPTGAKSHRC DECGKCFTRS SSLIRHKIIH
bmy_13981T0/1-408 KGKGLGRSFS LSSNFNTPEE VPTGAKSHRC DECGKCFTRS SSLIRHKIIH
BACU012099/1-351 KGKGLGRSFS LSSNFNTPEE VPTGAKSHRC DECGKCFTRS SSLIRHKIIH
401 450
ENSP00000323148/1-563 TGEKPYECSE CGKAFSLNSN LVLHQRIHTG EKPHECNECG KAFSHSSNLI
ENSBTAP00000029042/1-563 TGEKPYECSE CGKAFSLNSN LVLHQRIHTG EKPHECNECG KAFSHSSNLI
ENSTTRP00000011673/1-561 TGEKPYECSE CGKAFSLNSN LVLHQRIHTG EKPHECNECG KAFSHSSNLI
bmy_13981T0/1-408 TGEKPYEC-- ---------- ---------- ---------- ----------
BACU012099/1-351 TGEKPYECSE CGKAFSLNSN LVLHQRIHTG EKPHECNECG KAFSHSSNLI
451 500
ENSP00000323148/1-563 LHQRIHSGEK PYECNECGKA FSQSSDLTKH QRIHTGEKPY ECSECGKAFN
ENSBTAP00000029042/1-563 LHQRIHSGEK PYECNECGKA FSQSSDLTKH QRIHTGEKPY ECSECGKAFN
ENSTTRP00000011673/1-561 LHQRIHSGEK PYECNECGKA FSQSSDLTKH QRIHTGEKPY ECSECGKAFN
bmy_13981T0/1-408 ---------- ---------- ---------- ---------- ----------
BACU012099/1-351 LHQQIHSGEK PYECNECGKA FSQSSDLTKH QRIHTGEKPY ECSECGKAFN
501 550
ENSP00000323148/1-563 RNSYLILHRR IHTREKPYKC TKCGKAFTRS STLTLHHRIH ARERASEYSP
ENSBTAP00000029042/1-563 RNSYLILHRR IHTREKPYKC TKCGKAFTRS STLTLHHRIH TRERASEYSP
ENSTTRP00000011673/1-561 RNSYLILHRR IHTREKPYKC TKCGKAFTRS STLTLHHRIH TRERASEYSP
bmy_13981T0/1-408 ---------- ---------- ---------- ---------- ----------
BACU012099/1-351 RNSYLILHRR IHTREKPYKC TKCGKAFTRS STLTLHHRIH TRERASEYSP
551 600
ENSP00000323148/1-563 ASLDAFGAFL KSCV
ENSBTAP00000029042/1-563 ASLDTFGAFL KTCV
ENSTTRP00000011673/1-561 ASLDAFGAFL KSCV
bmy_13981T0/1-408 ---------- ----
BACU012099/1-351 ASLDAFGAFL KSCV