KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:37:34 2014 Check: 00 .. Name: ENSP00000323148/1-563 Len: 564 Check: 4450 Weight: 1.00 Name: ENSBTAP00000029042/1-563 Len: 564 Check: 5462 Weight: 1.00 Name: ENSTTRP00000011673/1-561 Len: 564 Check: 5342 Weight: 1.00 Name: bmy_13981T0/1-408 Len: 564 Check: 762 Weight: 1.00 Name: BACU012099/1-351 Len: 564 Check: 4031 Weight: 1.00 // 1 50 ENSP00000323148/1-563 MMTAESREAT GLSPQAAQEK DGIVIVKVEE EDEEDHMWGQ DSTLQDTPPP ENSBTAP00000029042/1-563 MMTAESREAT GLSPQAAQEK DGIVIVKVEE EDEEEHMWGQ DASLQESPPP ENSTTRP00000011673/1-561 MMTAESREAT GLSPHAAQEK DGIVIVKVEE EDEEEHVWGQ DASLQESPPP bmy_13981T0/1-408 MMTAESREAT GLSPHAAQEK DGIVIVKVEE EDEEEHMWGQ DASLQESPPP BACU012099/1-351 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000323148/1-563 DPEIFRQRFR RFCYQNTFGP REALSRLKEL CHQWLRPEIN TKEQILELLV ENSBTAP00000029042/1-563 DPEVFRQRFR HFCYQNTFGP REALSRLKEL CHQWLRPEIH TKEQILELLV ENSTTRP00000011673/1-561 DPEIFRQRFR HFCYQNTFGP REALSRLKEL CHQWLRPEIN TKEQILELLV bmy_13981T0/1-408 DPEIFRQRFR HFCYQNTFGP REALSRLKEL CHQWLRPEIN TKEQIVELLV BACU012099/1-351 ---------- ---------- ---------- ---------- ---------- 101 150 ENSP00000323148/1-563 LEQFLSILPK ELQVWLQEYR PDSGEEAVTL LEDLELDLSG QQVPGQVHGP ENSBTAP00000029042/1-563 LEQFLSILPR ELQAWLQEYR PDSGEEAVTL LEDLELDLSG QQVPGQVHGP ENSTTRP00000011673/1-561 LEQFLSILPK ELQVWLQEYR PDSGEEAVTL LEDLELDLSG QQVPGQVHGP bmy_13981T0/1-408 LEQFLSILPK ELQVWLQEYR PDSGEEAVTL LEDLELDLSG QQVPGQVHGP BACU012099/1-351 ---------- ---------- ---------- ---------- ---------- 151 200 ENSP00000323148/1-563 EMLARGMVPL DPVQESSSFD LHHEATQSHF KHSSRKPRLL QSRALPAAHI ENSBTAP00000029042/1-563 EMLARGMVPL DPVQESSSFD LPHEPTQSHF KHSSRKPRLL QPRALPATHV ENSTTRP00000011673/1-561 EMLARGMVPL DPVQESSSFD LPHEATQSHF KHSSRKPRLL QPRALPATHV bmy_13981T0/1-408 EMLARGMVPL DPVQESSSFD FPHEATQSHF KHSSRKPRLL QPRALPATHV BACU012099/1-351 ---------- ---------- ---------- ---------- ---------- 201 250 ENSP00000323148/1-563 PAPPHEGSPR DQAMASALFT ADSQAMVKIE DMAVSLILEE WGCQNLARRN ENSBTAP00000029042/1-563 PAPHPEGAPR DQAMASALFS ADSQAMVKIE DMAVSLILEE WGCQNLARRN ENSTTRP00000011673/1-561 PAPQHEGGPR DQAMASALFS ADSQAMVKIE DMAVSLILEE WGCQNLARRN bmy_13981T0/1-408 PAPHHEGGPR DQAMASALFS ADSQAMVKIE DMAVSLILEE WGCQNLARRN BACU012099/1-351 ---------- ---MASALFS ADSQAMVKIE DMAVSLILEE WGCQNLARRN 251 300 ENSP00000323148/1-563 LSRDNRQENY GSAFPQGGEN RNENEESTSK AETSEDSASR GETTGRSQKE ENSBTAP00000029042/1-563 LNRDTRQENY GNVISQGCEN RNENEESTSK AESAEDSASR GETAGKFQKD ENSTTRP00000011673/1-561 LNRDTRQENY GNVISQGCE- --KNEESTSK AEIAEDSASH GETTGKFQKD bmy_13981T0/1-408 LNRDTRQENY GNVISQGCEN RNENEESTSK AEIAEDSASH GETTGKFQKD BACU012099/1-351 LNRDARQENY GNVISQGCEN RNENEESTSK AEIAEDSASH GETTGKFQKD 301 350 ENSP00000323148/1-563 FGEKRDQEGK TGERQQKNPE EKTRKEKRDS GPAIGKDKK- TITGERGPRE ENSBTAP00000029042/1-563 VGEKREQQGR VVERQQRNPE EKAGKEKRDS GPATVKEKK- PSTGERGPRE ENSTTRP00000011673/1-561 FGEKRDQQGR VVERQQRNPE EKTGKEKRDP GPATVKEKKN PSTGERGPRE bmy_13981T0/1-408 FGEKREQQGR VVERQQRNPE EKTGKEKRDP GPATVKEKKN PSTGERGPRE BACU012099/1-351 FGEKREQQGR VVERQQRNPE EKTGKEKRDP GPATVKEKKN PSTGERGPRE 351 400 ENSP00000323148/1-563 KGKGLGRSFS LSSNFTTPEE VPTGTKSHRC DECGKCFTRS SSLIRHKIIH ENSBTAP00000029042/1-563 KGKGLGRSFS LSSNFTTTEE VPTGTKAHRC DECGKCFTRS SSLIRHKIIH ENSTTRP00000011673/1-561 KGKGLGRSFS LSSNFNTPEE VPTGAKSHRC DECGKCFTRS SSLIRHKIIH bmy_13981T0/1-408 KGKGLGRSFS LSSNFNTPEE VPTGAKSHRC DECGKCFTRS SSLIRHKIIH BACU012099/1-351 KGKGLGRSFS LSSNFNTPEE VPTGAKSHRC DECGKCFTRS SSLIRHKIIH 401 450 ENSP00000323148/1-563 TGEKPYECSE CGKAFSLNSN LVLHQRIHTG EKPHECNECG KAFSHSSNLI ENSBTAP00000029042/1-563 TGEKPYECSE CGKAFSLNSN LVLHQRIHTG EKPHECNECG KAFSHSSNLI ENSTTRP00000011673/1-561 TGEKPYECSE CGKAFSLNSN LVLHQRIHTG EKPHECNECG KAFSHSSNLI bmy_13981T0/1-408 TGEKPYEC-- ---------- ---------- ---------- ---------- BACU012099/1-351 TGEKPYECSE CGKAFSLNSN LVLHQRIHTG EKPHECNECG KAFSHSSNLI 451 500 ENSP00000323148/1-563 LHQRIHSGEK PYECNECGKA FSQSSDLTKH QRIHTGEKPY ECSECGKAFN ENSBTAP00000029042/1-563 LHQRIHSGEK PYECNECGKA FSQSSDLTKH QRIHTGEKPY ECSECGKAFN ENSTTRP00000011673/1-561 LHQRIHSGEK PYECNECGKA FSQSSDLTKH QRIHTGEKPY ECSECGKAFN bmy_13981T0/1-408 ---------- ---------- ---------- ---------- ---------- BACU012099/1-351 LHQQIHSGEK PYECNECGKA FSQSSDLTKH QRIHTGEKPY ECSECGKAFN 501 550 ENSP00000323148/1-563 RNSYLILHRR IHTREKPYKC TKCGKAFTRS STLTLHHRIH ARERASEYSP ENSBTAP00000029042/1-563 RNSYLILHRR IHTREKPYKC TKCGKAFTRS STLTLHHRIH TRERASEYSP ENSTTRP00000011673/1-561 RNSYLILHRR IHTREKPYKC TKCGKAFTRS STLTLHHRIH TRERASEYSP bmy_13981T0/1-408 ---------- ---------- ---------- ---------- ---------- BACU012099/1-351 RNSYLILHRR IHTREKPYKC TKCGKAFTRS STLTLHHRIH TRERASEYSP 551 600 ENSP00000323148/1-563 ASLDAFGAFL KSCV ENSBTAP00000029042/1-563 ASLDTFGAFL KTCV ENSTTRP00000011673/1-561 ASLDAFGAFL KSCV bmy_13981T0/1-408 ---------- ---- BACU012099/1-351 ASLDAFGAFL KSCV