KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:37:34 2014 Check: 00 .. Name: ENSP00000353512/1-854 Len: 875 Check: 8954 Weight: 1.00 Name: ENSBTAP00000029045/1-818 Len: 875 Check: 6371 Weight: 1.00 Name: ENSTTRP00000012720/1-845 Len: 875 Check: 5634 Weight: 1.00 Name: bmy_03228T0/1-700 Len: 875 Check: 116 Weight: 1.00 Name: BACU006070/1-811 Len: 875 Check: 9426 Weight: 1.00 // 1 50 ENSP00000353512/1-854 MDFSMVAGAA AYNEKSGRIT SLSLLFQKVF AQIFPQWRKG NTEECLPYKC ENSBTAP00000029045/1-818 MDFSKGVGAA ADSEK----- ---------- ---------- ---------- ENSTTRP00000012720/1-845 MDFSKGVGAA AYNEKSGRIT SLPLLSQKIF AHIFPQWRKG NTEDCLPHRC bmy_03228T0/1-700 MDFSKGVGAA AYNEK----- ---------- ---------- ---------- BACU006070/1-811 MDFSKGVGAA AYNEK----- ---------- ---------- ---------- 51 100 ENSP00000353512/1-854 SETGALGENY SWQIPINHND FKILKNNERQ LCEVLQNKFG CISTLVSPVQ ENSBTAP00000029045/1-818 PEIDTLRGNY SQQIPISHDN FKILKNNESL LCEVLQNKFG CNFTLVSPAP ENSTTRP00000012720/1-845 SEIDNLRENY SRQISINHND FKILKNNESQ LWEVLQKKFS CIFTLVSPAQ bmy_03228T0/1-700 SEINTLRENY SRQISINHND FKILKNNESR LWEVLQNKFS CIFSLVSPAQ BACU006070/1-811 SEIDTLRENY SRQISINHND FKILKNNESR LWEVLQNKFS CIFSLVSPAQ 101 150 ENSP00000353512/1-854 EGNSKSLQVF RKMLTPRIEL SVWKDDLTTH AVDAVVNAAN EDLLHGGGLA ENSBTAP00000029045/1-818 KGNNESLRVF RKMLTPRVEL SIWKDDLTRH AVDAVVNAAN EELLHGGGLA ENSTTRP00000012720/1-845 EGNSESLQVF RKMLVPRLEL SVWKDDLTRH VVDVVVNAAN EDLIHGGGLA bmy_03228T0/1-700 EGNSESRQVF RKMLMPRLEL SVWKDDLTRH AVDAVVNAAN EDLMHGGGLA BACU006070/1-811 EGNSESRQVF RKMLMPRLEL SVWKDDLTRH AVDAVVNAAN EDLMHGGGLA 151 200 ENSP00000353512/1-854 LALVKAGGFE IQEESKQFVA RYGKVSAGEI AVTGAGRLPC KQIIHAVGPR ENSBTAP00000029045/1-818 QALVKAGGFE IQEESRQVIS KYGRISTGEI AITGAGKLPC QTIIHAVGPR ENSTTRP00000012720/1-845 QALVKAGGLE IQEESRRYVS LCGKIPTGGI AITGAGKLPC KLIIHAVGPR bmy_03228T0/1-700 QALVKAGGLE IQEESRRYIS LYGKIPVGDI AITRAGKLPC KLIIHAVGPR BACU006070/1-811 QALVKAGGLE IQEESRRYIS LYGKIPTGDI AITRAGKLPC KLIIHAVGPR 201 250 ENSP00000353512/1-854 WMEWDKQGCT GKLQRAIVSI LNYVIY-KNT HIKTVAIPAL SSGIFQFPLN ENSBTAP00000029045/1-818 WSLMDSQECI DKLKTAIVNI LRFVSSKNSM NIETVAIPAL SSGIFQFPLS ENSTTRP00000012720/1-845 WGLMDRQECI DKLRRAIINI LDFVN--HNG CLETVAIPAL SSGIFQFPLD bmy_03228T0/1-700 WGLMDREECI SKLQRAIRNI LDFV---NNV YTETVAIPAL SSGIFQFPLD BACU006070/1-811 WGLMDRQECI GKLKRAITNI LDFVN--SEV YTETVAIPAL SSGIFQFPLD 251 300 ENSP00000353512/1-854 LCTKTIVETI RVSLQGKPMM SNLKEIHLVS NEDPTVAAFK AASEFILGKS ENSBTAP00000029045/1-818 LCTEIIVQTI KMYFQNTPIA NNFKEIHLVS NEDPTVAAFK TASEIILGRN ENSTTRP00000012720/1-845 LCTQVIVETI KRYFQNMQLA NNLKEIHLVS NEDPTVAAFK TISEAILGRN bmy_03228T0/1-700 LCTQVIVETI KYYFQNMQLA SNLKEIHLVS NEDRTVAAFK TVSEVILGRX BACU006070/1-811 LCTQVIVETI KCYFQNMQLA SNLKEIHLVS NEDRTVAAFK TASEVILGRN 301 350 ENSP00000353512/1-854 ELG----QET TPSFNAMVVN NLTLQIVQGH IEWQTADVIV NSVNPH-DIT ENSBTAP00000029045/1-818 ELESLVSQGA TQPFNTMVVN SMTLHIVQGL IERQETDVIV NSMYPRIGLR ENSTTRP00000012720/1-845 ELGSRVSQEA TDLFNTMVVN NLTLQIVQGH IEMQETNVIV NSVYTHGGLR bmy_03228T0/1-700 ELGSWVSQEA SHLFNTMVVN NLTLQIVEGL IEMQETNVIV NSVYRRGGLR BACU006070/1-811 ELGSRMSQEA SHLFNTMVVN NLTLQIVQGL TEMQETNVIV NFVYPHGGLR 351 400 ENSP00000353512/1-854 VGPVAKSILQ QAGVEMKSEF LATKAKQFQR SQLVLVTKGF NLFCKYIYHV ENSBTAP00000029045/1-818 AGSVSESILK AAGDEIEWEL CQKITKTVLD SQLVLVTRGF KLSCKYIYHV ENSTTRP00000012720/1-845 ATSVSKSILQ AAGDEIEREF -AKMTNTPLD SQLVLVTKGF KLPCKYVYHV bmy_03228T0/1-700 ATSVSKSILQ AAGDEIEREF SQNMTKTPLD SQLVLVTKGF KLPCKYVYHV BACU006070/1-811 ATSVSKSILQ AAGDEIEREF SQNMTKTPLD SQLVLVTKGF KLPCKYVYHV 401 450 ENSP00000353512/1-854 LWHSEFPKPQ I-LKHAMKEC LEKCIEQNIT SISFPALGTG NMEIKKETAA ENSBTAP00000029045/1-818 LWTSEYSEQK LLLKAAMKKC LEKCLELNMT SISFPAFGTG ITGMKKSEIA ENSTTRP00000012720/1-845 LWPSGYSEQK LTLETAMKKC LGKCLELNIT SISFPALGTG I-----SEAA bmy_03228T0/1-700 LWPSGYSEQK LTLETAMRKC LEKCLELNIT SISFPALGTG I-----SAAA BACU006070/1-811 LWPSRCSEQK LTLETAMKKC LEKCLELNIT SISFPALGTG I-----SAAA 451 500 ENSP00000353512/1-854 EILFDEVLTF AKDHVKHQLT VKFVIFPTDL EIYKAFSSEM AK-RSKMLSL ENSBTAP00000029045/1-818 EIMFNEVLIF ARQSLQ-QLA VKFVIFPEEL ETYKAFSAEM EKNKFKLQGL ENSTTRP00000012720/1-845 EIMFNEVLMF ARHHLQ-QLT VKFVIFPKEQ QLYKVFSTEM EKNKLKLQGL bmy_03228T0/1-700 EIMFNEVLIF ARHHLQ-QLT VKFVIFPKXR QLYKVFSTEM EKNKLKLQGL BACU006070/1-811 EIMFNEVLVF ARHHLQ-PLT VKFVIFPKER QLYKVFSTEM EKNKLKLQGL 501 550 ENSP00000353512/1-854 NNYS-VPQST REEKRENGLE ARSPAINLMG FNVEEMYEAH AWIQRILSLQ ENSBTAP00000029045/1-818 NNYPGVPQET REKK-----E NRFPVISLMG SYWEKIDEAK AWIQRILSSK ENSTTRP00000012720/1-845 NNYPGVPQGT REKR-----E NRFPVFNLMG SDQEKIDEAQ AWIQRILTLQ bmy_03228T0/1-700 NNYPG----- ---------- ---------- ---------- ---------- BACU006070/1-811 NNYPGVPQGT REKR-----E NRFPVLNLMG PNQEKIDEAQ AWIQRILTLQ 551 600 ENSP00000353512/1-854 NHHIIENNHI LYLGRKEHDI LSQLQKTSSV SITEIISPGR TELEIEGARA ENSBTAP00000029045/1-818 ECHIIEDKHI LYFGEKEHDD LSVLQKTLCI SISEIVTLGK AHLEIRGAPA ENSTTRP00000012720/1-845 DYHIIEDMHI LYLGKKKHDY LSELQKTSCV SISEMISPGK AQLEIKGAQA bmy_03228T0/1-700 ---------- ---------- ---------- ---------- ---------- BACU006070/1-811 DYHIIEDMHI LYLGKKKHDY LSQLQKTSWV SISEMISPGK AHLEIKGAQA 601 650 ENSP00000353512/1-854 DLIEVVMNIE DMLCKVQEEM ARKKERGLWR SLGQWTIQQQ KTQDEMKENI ENSBTAP00000029045/1-818 NLIEAVINIE QMLCKVQEEM ARTEEQVLWS LSGQHTDQQP ENQNQMKEN- ENSTTRP00000012720/1-845 DLFKAVMNIE LMLCEVQEEM ARKKERILWS LSGQQTDQQP ENQNPIKEN- bmy_03228T0/1-700 ---------- ---------- ---------- --GQQTGQQS ENQNQMKEN- BACU006070/1-811 DLIKAVMNIE HMLCEVQEEM ARKKERFLWS LSGQQTDQQP ENQNQMKEN- 651 700 ENSP00000353512/1-854 IFLKCPVPPT QELLDQKKQF EKCGLQVLKV EKIDNEVLMA AFQRKKKMME ENSBTAP00000029045/1-818 TFLKWLTLSA PEIQDKKKQF EDCGLRVIKV EKIDNVLLMA AFQERKKMME ENSTTRP00000012720/1-845 AFLKCLKIST REIQDQKKQF EDCGLWVIKX XXXXXXXXXX XXXXXXXXXX bmy_03228T0/1-700 AFLKCLKLST REIQDQKKQX EDCGLRVIKV EKIDNALLMA AFQRRKKMME BACU006070/1-811 AFLKCLKLSA REIQDQKKQF EDCGLRVIKV EKIDNALLMA AFQRRKKMME 701 750 ENSP00000353512/1-854 EKLHRQPVSH RLFQQVPYQF CNVVCRVGFQ RMYSTPCD-- ---------- ENSBTAP00000029045/1-818 GRPSGKPVSY RLFQQVPHQF CKMVCRVGFH RVYSMPCD-- ---------- ENSTTRP00000012720/1-845 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXX-- ---------- bmy_03228T0/1-700 DRTHGKPMSH RLFQQVPHQF CKMVCRVGFH RMYSVPCGRC QSLTIGVTLY BACU006070/1-811 DRTHGKPVSH RLFQQVPHQF CKMVCRVGFH RMYSVPCD-- ---------- 751 800 ENSP00000353512/1-854 PKYGAGIYFT KNLKNLAEKA KKISAADKLI YVFEAEVLTG FFCQGHPLNI ENSBTAP00000029045/1-818 QKYGAGIYFT KNLKNIAHRI KKTSATDKLI CVFEAEVLTG FFCQGSQLNI ENSTTRP00000012720/1-845 PKYGAGIYFT KNLKNIAHQI KKTSATDKLI YVFEAEVLTG SFCKGHQFNI bmy_03228T0/1-700 PKYGAGIYFT KNLKNIAHQI KKTSATDKLI YVFEAEVLTG SFCKGHQLNI BACU006070/1-811 PKYGAGIYFT KNLKNIAHQI KKTSATDKLI YVFEAEVLTG SFCKGHQLNI 801 850 ENSP00000353512/1-854 VPPPLSPGAI DGHDSVVDNV SSPETFVIFS GMQAIPQYLW TCTQEYVQSQ ENSBTAP00000029045/1-818 VPPPSHPGAI DSYDSVVDNV SSPETFVIFS NTQAVPQYLW TCIQDHV--Q ENSTTRP00000012720/1-845 VPPPLHPGAV DCHDSVVDNV SSPETFVVFS DTQAVPQYLW TCIQSHV--Q bmy_03228T0/1-700 VPPPLHPGAV DXHDSVVDNV SSPETFVIFS DTQAVPQYLW TCIQDHV--Q BACU006070/1-811 VPPPLHPGAV DCHDSVVDNV SSPETFVVFN DTQAVPQYLW TCIQDHV--Q 851 900 ENSP00000353512/1-854 DYSSGPMRPF AQHPWRGFAS GSPVD ENSBTAP00000029045/1-818 GY-SGQMMLS PQQSYGIFSS GSSVD ENSTTRP00000012720/1-845 DY-SGQMMLS PQQPWRKLSS GSSVD bmy_03228T0/1-700 DY-SGQMMLS PQQPWRKLSS GSSVD BACU006070/1-811 DY-SGQMMLS PQQPWRKLSS GSSVD