KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:37:36 2014 Check: 00 .. Name: ENSP00000269571/1-1255 Len: 1334 Check: 5827 Weight: 1.00 Name: ENSBTAP00000029056/1-1257 Len: 1334 Check: 9314 Weight: 1.00 Name: ENSTTRP00000007782/1-1228 Len: 1334 Check: 8738 Weight: 1.00 Name: bmy_12744T0/1-919 Len: 1334 Check: 7284 Weight: 1.00 Name: BACU007017/1-1183 Len: 1334 Check: 5508 Weight: 1.00 // 1 50 ENSP00000269571/1-1255 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000029056/1-1257 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000007782/1-1228 ---------- ---------- ---------- ---------- ---------- bmy_12744T0/1-919 GRRRRWRRRA ALRKYRNEVV ELRFPSIVPT EPRRPPEAAG RPCAGCSFRR BACU007017/1-1183 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000269571/1-1255 ---------- ---------- ---------M ELAALCRWGL LLALLPPGAA ENSBTAP00000029056/1-1257 ---------- ---------- ------VSTM ELAAWCRWGL LLALLPPGAA ENSTTRP00000007782/1-1228 ---------- ---------- ---------- ---------- ---------- bmy_12744T0/1-919 ERPAPSPRPP GALAAWSSRS HGAGAAVSTM ELAAWCRWGL LLALLPPGAA BACU007017/1-1183 ---------- ---------- ---------M ELAAWCRWGL LLALLPPGAA 101 150 ENSP00000269571/1-1255 STQVCTGTDM KLRLPASPET HLDMLRHLYQ GCQVVQGNLE LTYLPTNASL ENSBTAP00000029056/1-1257 GTQVCTGTDM KLRLPASPET HLDMLRHLYQ GCQVVQGNLE LTYLPADASL ENSTTRP00000007782/1-1228 ----CTGTDM KLRPLASPET HLDMLRHLYQ GCQVVQGNLE LTYLPANASL bmy_12744T0/1-919 GTQVCTGTDM KLRLPASPXT HLDMLRHLYQ GCQVVQGNLE LTYLPSNASL BACU007017/1-1183 GTQVCTGTDM KLQLPASPET HLDMLRHLYQ GCQVVQGNLE LTYLPSNASL 151 200 ENSP00000269571/1-1255 SFLQDIQEVQ GYVLIAHNQV RQVPLQRLRI VRGTQLFEDN YALAVLDNGD ENSBTAP00000029056/1-1257 SFLQEIQEVQ GYVLIAHNRV SQVPLQRLRI VRGTQLFEEH YALAVLDNGD ENSTTRP00000007782/1-1228 SFLQEIQEVQ GYVLIAQNRV SQVPLQRLRI VRGTQLFEDN YALAVLDNGG bmy_12744T0/1-919 SFLQEIQEVQ GYVLIAHNQV SQVPLQRLRI VRGTQLFKDN YALAVLDNGD BACU007017/1-1183 SFLQEIQEVQ GYVLIAHNQV SQVPLQRLRI VRGTQLFKDN YALAVLDNGD 201 250 ENSP00000269571/1-1255 PLNNTTPVTG ASPGGLRELQ LRSLTEILKG GVLIQRNPQL CYQDTILWKD ENSBTAP00000029056/1-1257 FLESAAPAAG TAPGGLQELQ LRSLTEILKG GVLIQRNPQL CHQDTILWED ENSTTRP00000007782/1-1228 LLEGAPPAAH TAPGGLQELQ LRSLTEILKG GVLIQRNPQL CHQDTIVWKD bmy_12744T0/1-919 LLESATPAAR AAPGGLQELQ LRSLTEILKG GVLIQRNPRL CHQDTILWRD BACU007017/1-1183 LLESATPAAR AAPGGLQELQ LRSLTEILKG GVLIQRNPRL CHQDTILWKD 251 300 ENSP00000269571/1-1255 IFHKNNQLAL TLIDTNRSRA CHPCSPMCKG SRCWGESSED CQSLTRTVCA ENSBTAP00000029056/1-1257 IFHKNNQLPL KQIDTNRSRA CAPCSPACKA PNCWGESSQD CQSLTRTVCA ENSTTRP00000007782/1-1228 IFHRNNQLAL MQIDTNRSRA CPPCSPACKA PHCWGESSKD CQSLTRTVCA bmy_12744T0/1-919 IFHKNNQLAL MLIDTNRSRA CPPCSPACKA PHCWGESSKD CQSLTRTICA BACU007017/1-1183 IFHKNNQLAL MLRDTNRSRA CPPCSPACKA PHCWGESSKD CQSLTGTVCA 301 350 ENSP00000269571/1-1255 GGCARCKGPL PTDCCHEQCA AGCTGPKHSD CLACLHFNHS GICELHCPAL ENSBTAP00000029056/1-1257 SGCARCKGPQ PTDCCHEQCA AGCTGPKHSD CLACLHFNHS GICELHCPAL ENSTTRP00000007782/1-1228 SGCARCKGPQ PTDCCHEQCA AGCTGPKHSD CLACLHFNHS GICELHCPAL bmy_12744T0/1-919 SGCARCKGLQ PTDCCHEQCA AGCTGPKHSD CLACLHFNHS GICELHCPAL BACU007017/1-1183 SGCARCKGPQ PTDCCHEQCA AGCTGPKHSD CLACLHFNHS GICELHCPAL 351 400 ENSP00000269571/1-1255 VTYNTDTFES MPNPEGRYTF GASCVTACPY NYLSTDVGSC TLVCPLHNQE ENSBTAP00000029056/1-1257 VTYNTDTFES MPNPEGRYTF GASCVTACPY NYLSTDVGSC TLVCPLNNQE ENSTTRP00000007782/1-1228 VTYNTDTFES MPNPEGRYTF GASCVTTCPY NYLSTDVGSC TLVCPLNNQE bmy_12744T0/1-919 VTYNTDTFES MPNPEGRYTF GASCVTACPY NYLSTDVGSC TLVCPLNNQE BACU007017/1-1183 VTYNTDTFES MPNPEGRYTF GASCVTACPY NYLSTDVGSC TLVCPLNNQE 401 450 ENSP00000269571/1-1255 VTAEDGTQRC EKCSKPCARV CYGLGMEHLR EVRAVTSANI QEFAGCKKIF ENSBTAP00000029056/1-1257 VTAEDGTQRC EKCSKPCAPV CYGLGMEHLR EVRAVTSANI QEFAGCKK-F ENSTTRP00000007782/1-1228 VTAEDGTQRC EKCSKPCARV CYGLGMEHLR EVRAVTSANI QEFAGCKKIF bmy_12744T0/1-919 VTAEDGTQRC EKCSKPCARV CYGLGMEHLR EVRAVTSANI QEFAGCKKIF BACU007017/1-1183 VTAEDGTQRC EKCSKPCARV CYGLGMEHLR EVRAVTSANI QEFAGCKKIF 451 500 ENSP00000269571/1-1255 GSLAFLPESF DGDPASNTAP LQPEQLQVFE TLEEITGYLY ISAWPDSLPD ENSBTAP00000029056/1-1257 GSLAFLPESF AGDPDSNIAP LQAEQLKVFE SLEEITGYLY ISAWPDSLPD ENSTTRP00000007782/1-1228 GSLAFVPESF EGDRASNTAP LQPEQLRVFE SLEEITGYLY ISAWPDSLPD bmy_12744T0/1-919 GSLAFLPESF EGDQASNTAP LQPEQLSVFE SLEEITGYLY ISAWPDSLPD BACU007017/1-1183 GSLAFLPESF EGDRASNTAP LQPEQLGVFE SLEEITGYLY ISAWPDSLPD 501 550 ENSP00000269571/1-1255 LSVFQNLQVI RGRILHNGAY SLTLQGLGIS WLGLRSLREL GSGLALIHHN ENSBTAP00000029056/1-1257 LSVFQNLRVI RGRVLHDGAY SLTLQGLGIS WLGLRSLREL GSGLALIHRN ENSTTRP00000007782/1-1228 LHVFQNLRVI RGRVLHDGAY SLTLQGLGIR WLGLRSLREL GSGLALIHRN bmy_12744T0/1-919 LHVFQNLRVI RGRVLHDGAY SLTLQGLGIR WLGLRSLREL GSGLALIHRN BACU007017/1-1183 LHVFQNLRVI RGRVLHDGAY SLTLQGLGIR WLGLRSLREL GSGLALIHRN 551 600 ENSP00000269571/1-1255 THLCFVHTVP WDQLFRNPHQ ALLHTANRPE DECVGEGLAC HQLCARGHCW ENSBTAP00000029056/1-1257 ARLCFVHTVP WDQLFQNPHQ ALLHSANRPE DECVGEGLAC YPLCAQGHCW ENSTTRP00000007782/1-1228 ARLCFVHTVP WDQLFRNPHQ ALLHSANRPE VECVGEGLAC YPLCAHGHCW bmy_12744T0/1-919 ARLCFVHTVP WDQLFRNPHQ ALLHSANRPE VECVGEGLAC YPLCAHGHCW BACU007017/1-1183 ARLCFVHTVP WDQLFRNPHQ ALLHSANRPE VECVGEGLAC YPLCAHGHCW 601 650 ENSP00000269571/1-1255 GPGPTQCVNC SQFLRGQECV EECRVLQGLP REYVNARHCL PCHPECQPQN ENSBTAP00000029056/1-1257 GPGPTQCVNC SQFLRGQECV EECRVLQGLP REYVKDRYCL PCHPECHPQN ENSTTRP00000007782/1-1228 GPG-TQCVNC SQFLRAQQCV EECRVLQGLP REYVKDRYCL PCHPECQPQN bmy_12744T0/1-919 GPGPTQCVNC SQFLRGQQCV EECRVLQGLP REYVKDRYCL PCHPECQPQN BACU007017/1-1183 GPGPTQGVNC SQFLRGQQ-- --------LP REYVKDRYCL PCHPECQPQN 651 700 ENSP00000269571/1-1255 GSVTCFGPEA DQCVACAHYK DPPFCVARCP SGVKPDLSYM PIWKFPDEEG ENSBTAP00000029056/1-1257 GSVTCFGSEA DQCVACAHYK DPPFCVARCP SGVKPDLSFM PIWKFPDEEG ENSTTRP00000007782/1-1228 GSVTCFGSEA DQCVACTHYK DPPFCVARCP SGVKPDLSFM PIWKFPDEEG bmy_12744T0/1-919 GSVTCFGSTG PQSLTLA--- ---------- ---------- ---------- BACU007017/1-1183 GSVTCFGSEA DQCVACAHHK DPPFCVARCP SGVKPDLSFM PIWKFPDEEG 701 750 ENSP00000269571/1-1255 ACQPCPINCT HSCVDLDDKG CPAEQRASPL TSIISAVVGI LLVVVLGVVF ENSBTAP00000029056/1-1257 ICQPCPINCT HSCVDLDDKG CPAEQRASPV TSIIAAVVGV LLVVLVGLVF ENSTTRP00000007782/1-1228 MCQPCPINCT HSCVDLDDKG CPAEQRASPV TSIIAAVVGI LLVVVVGLVF bmy_12744T0/1-919 ---PAP---- ---------- -------SPV TSIIAAVVGI LLVVVVGLVF BACU007017/1-1183 MCQPCPINCT HSCVDLDDKG CPAEQRASPV TSIIAAVVGI LLVVVVGLVF 751 800 ENSP00000269571/1-1255 GILIKRRQQK IRKYTMRRLL QETELVEPLT PSGAMPNQAQ MRILKETELR ENSBTAP00000029056/1-1257 GILIKRRRQK IRKYTMRRLL QETELVEPLT PSGAMPNQAQ MRILKETELR ENSTTRP00000007782/1-1228 GILVKRRRQK IRKYTMRRLL QETELVEPLT PSGAMPNQAQ MRILKETELR bmy_12744T0/1-919 GILIKRRRQK IRKYTMRRLL QETE------ ---------- ---------- BACU007017/1-1183 GILIKRRRQK IRKYTMRRLL QETELVEPLT PSGAMPNQAQ MRILKETELR 801 850 ENSP00000269571/1-1255 KVKVLGSGAF GTVYKGIWIP DGENVKIPVA IKVLRENTSP KANKEILDEA ENSBTAP00000029056/1-1257 KVKVLGSGAF GTVYKGIWIP DGENVKIPVA IKVLRENTSP KANKEILDEA ENSTTRP00000007782/1-1228 KVKVLGSGAF GTVYKGIWIP DGENVKIPVA IKVL-ENXXX XXXXXXXXEA bmy_12744T0/1-919 ---------- ---------- ---------- ---------- ---------- BACU007017/1-1183 KVKVLGSGAF GTVYKGIWIP DGENVKIPVA IKVLRENTSP KANKEILD-- 851 900 ENSP00000269571/1-1255 YVMAGVGSPY VSRLLGICLT STVQLVTQLM PYGCLLDHVR ENRGRLGSQD ENSBTAP00000029056/1-1257 YVMAGVGSPY VSRLLGICLT STVQLVTQLM PYGCLLDHVR EHRGRLGSQD ENSTTRP00000007782/1-1228 YVMAGVGSPY VSRLLGICLT STVQLVTQLM PYGCLLDHVR EHRGRLGSQD bmy_12744T0/1-919 ---------- ---------- ---------- ---------- ---------- BACU007017/1-1183 ---------- ---------- ---------- ---------- ---------- 901 950 ENSP00000269571/1-1255 LLNWCMQIAK GMSYLEDVRL VHRDLAARNV LVKSPNHVKI TDFGLARLLD ENSBTAP00000029056/1-1257 LLNWCVQIAK GMSYLEDVRL VHRDLAARNV LVKSPNHVKI TDFGLARLLD ENSTTRP00000007782/1-1228 LLNWCVQIAK GMSYLEDVRL VHRDLAARNV LVKSPNHVKI TDFGLARLLD bmy_12744T0/1-919 ---------- ---------- ---------- ---------- ---------- BACU007017/1-1183 ---------- GMSYLEDVRL VHRDLAARNV LVKSPNHVKI TDFGLARLLD 951 1000 ENSP00000269571/1-1255 IDETEYHADG GKVPIKWMAL ESILRRRFTH QSDVWSYGVT VWELMTFGAK ENSBTAP00000029056/1-1257 IDETEYHADG GKVPIKWMAL ESILRRRFTH QSDVWSYGVT VWELMTFGAK ENSTTRP00000007782/1-1228 IDETEYHADG GKVPIKWMAL ESILRRRFTH QSDVWSYGVT VWELMTFGAK bmy_12744T0/1-919 ---------- ---------- ---------- ---------- ---------- BACU007017/1-1183 IDETEYHADG GKVPIKWMAL ESILRRRFTH QSDVWSYGVT VWELMTFGAK 1001 1050 ENSP00000269571/1-1255 PYDGIPAREI PDLLEKGERL PQPPICTIDV YMIMVKCWMI DSECRPRFRE ENSBTAP00000029056/1-1257 PYDGIPAREI PDLLEKGERL PQPPICTIDV YMIMVKCWMI DSECRPRFRE ENSTTRP00000007782/1-1228 PYDGIPAREI PDLLEKGERL PQPPICTIDV YMIMVKCWMI DSECRPRFRE bmy_12744T0/1-919 ---------- ---------- ---------- ---------- ---------- BACU007017/1-1183 PYDGIPAREI PDLLEKGERL PQPPICTIDV YMIMVKCWMI DSECRPRFRE 1051 1100 ENSP00000269571/1-1255 LVSEFSRMAR DPQRFVVIQN EDLGPASPLD STFYRSLLED DDMGDLVDAE ENSBTAP00000029056/1-1257 LVAEFSRMAR DPQRFVVIQN EDMGPASPLD STFYRSLLED DDMGDLVDAE ENSTTRP00000007782/1-1228 LVAEFSRMAR DPQRFVVIQN EDLGPPSPLD STFYRSLLED DDMGDLVDAE bmy_12744T0/1-919 ---------- ---------- ---------- ---------- ---------- BACU007017/1-1183 LVAEFSRMAR DPQRFVVIQN EDLGPTSPLD STFYRSLLED DDMGDLVDAE 1101 1150 ENSP00000269571/1-1255 EYLVPQQGFF CPDPAPGAGG MVHHRHRSSS TRSGGGDLTL GLEPSEEEAP ENSBTAP00000029056/1-1257 EYLVPQQGFF CPDPAPGAAG TAHRRHRSTS TRSGGGELTL GLEPSEEEPP ENSTTRP00000007782/1-1228 EYLVPQQGFF CPDPAPGSGG TAHRRHRSTS TRSGGGELTL GLEPSEEEPP bmy_12744T0/1-919 ---------- ---------- ---------- --SGGGELTL GLEPSEEEPP BACU007017/1-1183 EYLVPQQGFF CPDPAPGSGG TAHRRHRSTS TRSGGGELTL GLAPSEEEPP 1151 1200 ENSP00000269571/1-1255 RSPLAPSEGA GSDVFDGDLG MGAAKGLQSL PTHDPSPLQR YSEDPTVPLP ENSBTAP00000029056/1-1257 RSPLAPSEGA GSDVFDGDLG MGAAKGLQPL PQHDSSPLQR YSEDPTVPLS ENSTTRP00000007782/1-1228 RSPLAPSEGA GSDVFDGDLG MGAAKGLQNL PQHDSSPLQR YSEDPTVPLP bmy_12744T0/1-919 XSPLAPSEGA GSDVFDGDLG MGAAKGLQNL PQHDSSPLQR YSEDPTVPLP BACU007017/1-1183 RSPLAPSEGA GSDVFDGDLG MGAAKGLQNL PQHDSSPLQR YSEDPTVPLP 1201 1250 ENSP00000269571/1-1255 SETDGYVAPL TCSPQPEYVN QPDVRPQPPS PREGPLPAAR PAGATLERPK ENSBTAP00000029056/1-1257 PEADGYVAPL TCSPQPEYVN QPEVHPQPPS PLEGPLPPPR PAGSTLERPK ENSTTRP00000007782/1-1228 PETDGYVAPL TYSPQPEYVN QPEVRPQPPS PLEGPRPPPR PAGSTLERPK bmy_12744T0/1-919 PETDGYVAPL TCSPQPEYVN QPEVRPQPPS PLEGPRPPPR PAGSTLERPK BACU007017/1-1183 PETDGYVAPL TCSPQPEYVN QPEVRPQPPS PLEGPRPPPR PAGSTLERPK 1251 1300 ENSP00000269571/1-1255 TLSPGKNGVV KDVFAFGGAV ENPEYLTPQG GAAPQPHPPP AFSPAFDNLY ENSBTAP00000029056/1-1257 TLSPGKNGVV KDVFAFGAAV ENPEYLAPRG RAAPQSHPSP AFSPAFDNLY ENSTTRP00000007782/1-1228 TLSPGKNGVV KDIFAFGAAV ENPEYLAPRG RAAPQSHSSP AFSPAFDNLY bmy_12744T0/1-919 TLSPGKNGVV KDIFAFGAAV ENPEYLAPRG RAAPQSHPSP AFSPAFDNLY BACU007017/1-1183 TLSPGKNGVV KDIFAFGAAV ENPEYLAPRG RAAPQSHPSP AFSPAFDNLY 1301 1350 ENSP00000269571/1-1255 YWDQDPPERG APPSTFKGTP TAENPEYLGL DVPV ENSBTAP00000029056/1-1257 YWDQDPSERG TPPSTFEGTP TAENPEYLGL DMPV ENSTTRP00000007782/1-1228 YWDQDPSERG SPPSTFEGTP TAENPEYLGL DMPV bmy_12744T0/1-919 YWDQDPSERG SPPSTFEGTP TAENPEYLGL DMPV BACU007017/1-1183 YWDQDPSERG SPPSTFEGTP TAENPEYLGL DMPV