KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:37:37 2014 Check: 00 .. Name: ENSTTRP00000003920/1-521 Len: 606 Check: 4106 Weight: 1.00 Name: bmy_16993T0/1-468 Len: 606 Check: 5586 Weight: 1.00 Name: BACU013487/1-548 Len: 606 Check: 4761 Weight: 1.00 Name: ENSP00000385689/1-578 Len: 606 Check: 6964 Weight: 1.00 Name: ENSBTAP00000029061/1-594 Len: 606 Check: 4777 Weight: 1.00 // 1 50 ENSTTRP00000003920/1-521 ---------- ------MLRR LDKIRFRGHK RDDFLDLAES PNASDTECGD bmy_16993T0/1-468 ---------- ---------- --MLCAGTSH CESLAKSVEA SSVGALGAQP BACU013487/1-548 DPERHVKVKQ RGSVLNMLRR LDKIRFRGHK RDDFLDLAES PNASDTECGD ENSP00000385689/1-578 ---------- ------MLRR LDKIRFRGHK RDDFLDLAES PNASDTECSD ENSBTAP00000029061/1-594 DPERHAKVKQ RGSVLNMLRK LDKIRFRGHK RDDFLDLAES PNASDTECGD 51 100 ENSTTRP00000003920/1-521 ETP--LKIPR TSP-----RD SDELRDPAGP GTLIMAAGVQ DFNRTEFDRL bmy_16993T0/1-468 ETPSLLLRPR SCPDCVRGAP VDRLLRVCPP GRSKRAAVAS CLSALQTSPL BACU013487/1-548 ETP--LKTPR TSP-----RD SEELRDPAGP GTLIMAAGVQ DFNRTEFDRL ENSP00000385689/1-578 EIP--LKVPR TSP-----RD SEELRDPAGP GTLIMATGVQ DFNRTEFDRL ENSBTAP00000029061/1-594 EIP--LKIPR TSP-----RD SEELRDPAGP GTLIMAAGVQ DFNRTEFDRL 101 150 ENSTTRP00000003920/1-521 NE-----IKG HLEIALLEKH FLXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_16993T0/1-468 SAPLHGGQNG PHDAHLGFSP FTEEELRKLR EETNSEMLRQ ELDRERQRRM BACU013487/1-548 NE-----IKG HLEIALLEKH FLQEELRKLR EETNSEMLRQ ELDRERQRRM ENSP00000385689/1-578 NE-----IKG HLEIALLEKH FLQEELRKLR EETNAEMLRQ ELDRERQRRM ENSBTAP00000029061/1-594 NE-----IKG HLEIALLEKH FLQEELRKLR EETNAEMLRQ ELDRERQRRM 151 200 ENSTTRP00000003920/1-521 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXRRSQGL CPRVQKWFYE bmy_16993T0/1-468 ELEQKVQEVL KARAEDPPAQ QPPKGQAQVN NGADRRSQGL CPRVQKWFYE BACU013487/1-548 EQEQKVQEVL KARAEDPPAQ QPPKGQAQVN NGADRRSQGL CPRVQKWFYE ENSP00000385689/1-578 ELEQKVQEVL KARTEEQMAQ QPPKGQAQAS NGAERRSQGL SSRLQKWFYE ENSBTAP00000029061/1-594 ELEQKVQEVL KARAEEAPAQ QPPKGQAQVN NGAERRSQGL CPRVQKWFYE 201 250 ENSTTRP00000003920/1-521 KFGEYVEDFR FQPEESTVET EEPLSARRLT ENMRRLKRGA KPVTSFVKNL bmy_16993T0/1-468 KFGEYVEDFR FQPEESTVET EEPLSAR--- ---------- ---------- BACU013487/1-548 KFGEYVEDFR FQPEESTVET EEPLSARRLT ENMRRLKRGA KPVTSFVKNL ENSP00000385689/1-578 RFGEYVEDFR FQPEENTVET EEPLSARRLT ENMRRLKRGA KPVTNFVKNL ENSBTAP00000029061/1-594 KFGEYVEDFR FQPEESTVET EEPLSARRLT ENMRRLKRGA KPVTSFVKNL 251 300 ENSTTRP00000003920/1-521 SALSDWYSVY TSAIAFTVYM NAVWHGWAIP MFLFLAILRL SLNYLIAXXX bmy_16993T0/1-468 ---------- ---------- ---------- ---------- -------RGW BACU013487/1-548 SALSDWYSVY TSAIAFTVYM NAVWHGWAIP MFLFLAILRL SLNYLIARGW ENSP00000385689/1-578 SALSDWYSVY TSAIAFTVYM NAVWHGWAIP LFLFLAILRL SLNYLIARGW ENSBTAP00000029061/1-594 SALSDWYSVY TSAIAFTVYM NAVWHGWAIP MFLFLAILRL SLNYLIARGW 301 350 ENSTTRP00000003920/1-521 XXXXXXXXXX XXXXEPPKED LTVSEKFQLV LDVAQKAQNL FGKMADILEK bmy_16993T0/1-468 RIQWSIVPEV SEVVEPPKED LTVSEKFQLV LDVAQKAQNL FGKMADILEK BACU013487/1-548 RIQWSIVPEV SEVVEPPKED LTVSEKFQLV LDVAQKAQNL FGKMADILEK ENSP00000385689/1-578 RIQWSIVPEV SEPVEPPKED LTVSEKFQLV LDVAQKAQNL FGKMADILEK ENSBTAP00000029061/1-594 RIQWSIVPEV SEVVEPPKEE LTVSEKFQLV LDVAQKAQNL FGKMADILEK 351 400 ENSTTRP00000003920/1-521 IKNLFMWVQP EITQKLYIAL WAAFLASCFF PYRLVGLAVG LYAGIKLFVI bmy_16993T0/1-468 IKNLFMWVQP EITQKLYIAL WAAFLASCFF PYRLVGLAVG LYAGIKLFVI BACU013487/1-548 IKNLFMWVQP EITQKLYIAL WAAFLASCFF PYRLVGLALG LYAGIKLFVI ENSP00000385689/1-578 IKNLFMWVQP EITQKLYVAL WAAFLASCFF PYRLVGLAVG LYAGIKFFLI ENSBTAP00000029061/1-594 IKNLFMWVQP ETTQKLYVAL WAAFLASCFF PFRLVGLALG LYAGIKFFLI 401 450 ENSTTRP00000003920/1-521 DFIFKRCPRL RAKYDTXXXX XXXXXXXXXX XXXXXXXXXX XPQTASSRSY bmy_16993T0/1-468 DFIFKRCPRL RAKYDTPYII WKSLPTDPQL KERSSTAVSR RVGPAAARRC BACU013487/1-548 DFIFKRCPRL RAKYDTPYII WKSLPTDPQL KERSSTAVSR RVGPAAAGRC ENSP00000385689/1-578 DFIFKRCPRL RAKYDTPYII WRSLPTDPQL KERSSAAVSR RLQTTSSRSY ENSBTAP00000029061/1-594 DFIFKRCPRL RAKYDTPYII WKSLPTDPQL KERSSTAVSR RLQTASSRSC 451 500 ENSTTRP00000003920/1-521 VSSAPAGLSK DEDASRVHGA KKSNFHEIFN LTENERPLAV CESGWRCCLI bmy_16993T0/1-468 AGHTPLSLTS GLRGGWL--- ---------- ---------- CESGWRCCLI BACU013487/1-548 TGHTPLSLTS GLQGGWL--- ---------- ---------- CESGWRCCLI ENSP00000385689/1-578 VPSAPAGLGK EEDAGRFHST KKGNFHEIFN LTENERPLAV CENGWRCCLI ENSBTAP00000029061/1-594 VSSAPAGLSR DEDTGRLHGA KKGNFHEIFN LTENERPLAV CENGWRCCLI 501 550 ENSTTRP00000003920/1-521 NRDRKMPTDY IRNGVLYVTE NYLCFESSKS GFSKRNKVIK LVDITDI--- bmy_16993T0/1-468 NRDRKMPTDY IRNGVLYVTE NYLCFESSKS GFSKRNKVIK LVDITDI--- BACU013487/1-548 NRDRKMPTDY IRNGVLYVTE NYLCFESSKS GFSKRNKVIK LVDITDI--- ENSP00000385689/1-578 NRDRKMPTDY IRNGVLYVTE NYLCFESSKS GSSKRNKVIK LVDITDIQKY ENSBTAP00000029061/1-594 NRDRKMPTDY IRNGILYVTE NYLCFESSKS GSSKRNKVIK LMDITDIQKY 551 600 ENSTTRP00000003920/1-521 ---------- ---------- QK-------- ---------- ---------- bmy_16993T0/1-468 ---------- ---------- QKPLVFGAMV HRDEAFETIF SQYMKITAAA BACU013487/1-548 ---------- ---------- QKPLVFGAMV HRDEAFETIF SQYMKITAAA ENSP00000385689/1-578 KVLSVLPGSG MGIAVSTPST QKPLVFGAMV HRDEAFETIL SQYIKITSAA ENSBTAP00000029061/1-594 KVLSVLPGSG MGIAVSTPST QKPLVFGAMV HRDEAFETIF SQYMKITSAA 601 650 ENSTTRP00000003920/1-521 ------ bmy_16993T0/1-468 ASGGDS BACU013487/1-548 ASGGDS ENSP00000385689/1-578 ASGGDS ENSBTAP00000029061/1-594 AAGADS