KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:37:40 2014 Check: 00 .. Name: BACU015030/1-514 Len: 560 Check: 5980 Weight: 1.00 Name: ENSP00000371517/1-394 Len: 560 Check: 1319 Weight: 1.00 Name: ENSBTAP00000029075/1-382 Len: 560 Check: 7321 Weight: 1.00 Name: bmy_20692T0/1-378 Len: 560 Check: 4040 Weight: 1.00 Name: ENSTTRP00000010775/1-394 Len: 560 Check: 9586 Weight: 1.00 // 1 50 BACU015030/1-514 ---------- ---------- ---------- ---------- MRVPMALQGV ENSP00000371517/1-394 ---------- ---------- ---------- ---------- ----MALQGI ENSBTAP00000029075/1-382 ---------- ---------- ---------- ---------- ----MALRGI bmy_20692T0/1-378 TRERPRGRGY EGRRERATEE GPRPEWLRLG PLRLLRLRKE MRVPMALQGV ENSTTRP00000010775/1-394 ---------- ---------- ---------- ---------- ----MALQGI 51 100 BACU015030/1-514 SVVELAGLAP GPFCGMVLAD FGAQVVRVDR PGSRGDLSRM ARGKRSLAVD ENSP00000371517/1-394 SVVELSGLAP GPFCAMVLAD FGARVVRVDR PGSRYDVSRL GRGKRSLVLD ENSBTAP00000029075/1-382 TVVELAGLAP VPFCGMVLAD FGAQVVRVDR PGARSGPSRL ARGKRSLVVD bmy_20692T0/1-378 SVVELAGLAP GPFCGMVLAD FGAQVVRVDR PGSRGDLSRM ARGKRSLAVD ENSTTRP00000010775/1-394 SVVELAGLAP GPFCGMVLAD FGAQVVRVDR PGTRGDLSRM GRGKRSLALD 101 150 BACU015030/1-514 LKRPRGAAVL RSLCARADVM LESFRPGVME KLQLSPEILQ KENPKLIYAR ENSP00000371517/1-394 LKQPRGAAVL RRLCKRSDVL LEPFRRGVME KLQLGPEILQ RENPRLIYAR ENSBTAP00000029075/1-382 LKQPRGAAVL RRLCARADVM LEPFRPGVME KLQLGPEILQ KENPRLIYAR bmy_20692T0/1-378 LKRPRGAAVL RSLCARADVM LESFRP---- ---------- ---------- ENSTTRP00000010775/1-394 LKQPRGAAVL RSLCARADVM LECFRPGVME KLQLSPEILQ RENPKLIYAR 151 200 BACU015030/1-514 LSGFGQSGRF SRVAGHDINY LALSGVLSRI GRSGEAPYAP LNLLADFGGG ENSP00000371517/1-394 LSGFGQSGSF CRLAGHDINY LALSGVLSKI GRSGENPYAP LNLLADFAGG ENSBTAP00000029075/1-382 LSGFGQSGRF SKMAGHDINY LALSGVLSRI GRSGENPYAP LNLLADFGGG bmy_20692T0/1-378 ---------- ---------- ----GVLSRI GRSGEAPYAP LNLLADFGGG ENSTTRP00000010775/1-394 LSGFGQSGRF SRVAGHDINY LALSGVLSRI GRSGEAPYAP LNLLADFGGG 201 250 BACU015030/1-514 GLMCTLGILM ALFERTRSGK GQVIDANMVE GTAYLGSFLW KTEQTGLWGQ ENSP00000371517/1-394 GLMCALGIIM ALFDRTRTGK GQVIDANMVE GTAYLSSFLW KTQKLSLWEA ENSBTAP00000029075/1-382 GLMCAMGIIM ALFERTRSGK GQVIDASMVE GTAYLSSFMW KTQETGLWEQ bmy_20692T0/1-378 GLMCTLGILM ALFERTRSGK GQVIDANMVE GTAYLGSFLW KTQQTGLWGQ ENSTTRP00000010775/1-394 GLMCALGILM ALFERTRSGK GQVIDANMVE GTAYLSSFLW KTQQTGLWGQ 251 300 BACU015030/1-514 PRGQNMLDGG APFYTTYRTA DGGFMAVGAL EPQFYELLLK GLG---GALG ENSP00000371517/1-394 PRGQNMLDGG APFYTTYRTA DGEFMAVGAI EPQFYELLIK GLGLKSDELP ENSBTAP00000029075/1-382 PRGQNMLDGG APFYTTYRTA DGGFMAVGAI EPQFYELLIK GLGLKSDELP bmy_20692T0/1-378 PRGQNMLDGG APFYTTYRTA DGGFMAVGAL EPQFYELLLR GLGLKSDELP ENSTTRP00000010775/1-394 PRGQNMLDGG APFYATYRTA DGGFMAVGAL EPQFYELLLR GLGLKSDELP 301 350 BACU015030/1-514 YLLGAIDWAH LELGRLLGTE FQTRRTMTTK SLLRALMSMP PHYRCLCISH ENSP00000371517/1-394 NQMSMDDWPE MK------KK FADVFAEKTK AEWCQIFD-- ---------- ENSBTAP00000029075/1-382 NQLSMKDWPE MK------KK FADIFAKKTK AEWCQIFD-- ---------- bmy_20692T0/1-378 SQMSITDWPE MK------KK FADIFAKKTK AEWCQIFD-- ---------- ENSTTRP00000010775/1-394 SQMSITDWPE MK------KK FADIFAKKTK AEWCQIFD-- ---------- 351 400 BACU015030/1-514 LIGWTAFLSN MLFFTDFMGQ IVYHGDPYGA HNSTEFLIYQ RGVEVGCWGL ENSP00000371517/1-394 --GTDACVTP VLTFEE---- VVHHDH---- NKERGSFITS EEQDVSPRPA ENSBTAP00000029075/1-382 --GTDACVTP VLTFEE---- VTHHGH---- NKDRGSFITD TEQRVSPRPA bmy_20692T0/1-378 --GTDACVTP VLTFEE---- VTHCGH---- HKDRGSFIID REQGVSPRPA ENSTTRP00000010775/1-394 --GTDACVTP VLTFEE---- VTHCGH---- HKDRGSFIID SEQDVSPRPA 401 450 BACU015030/1-514 CINSVFSSLY SYFQKALVPY IGLKGLYFMG YLLFGLGTGV IGLFPNVYST ENSP00000371517/1-394 PLLLNTPAIP SFKRD---PF IG-------- ---------- -------EHT ENSBTAP00000029075/1-382 PLLSNTPALP SIKRD---PF VG-------- ---------- -------EHT bmy_20692T0/1-378 PQLSNTPAVP SSKRD---PF VG-------- ---------- -------EHT ENSTTRP00000010775/1-394 PQLSNTPAVP SSKRD---PF VG-------- ---------- -------EHT 451 500 BACU015030/1-514 LVICTLFGVM SSTLYTVPFN LITAYHREEQ EKQRQQARGG GPDSSARGQG ENSP00000371517/1-394 EEILEEFGFS REEIYQLNSD KIIESNKA-- ---------- ---------- ENSBTAP00000029075/1-382 EEILKEFGFS QKEINQLKLD NIIEIHK--- ---------- ---------- bmy_20692T0/1-378 EEILKEFGFS QEEISQLKSD KIIESNK--- ---------- ---------- ENSTTRP00000010775/1-394 EEILKEFGFS QEEISQLKSD KIIESNKS-- ---------- ---------- 501 550 BACU015030/1-514 VDCATLTCVV QLAQILVGGG LGLLVNTAGS VVVVVITASA VALIGCCFVA ENSP00000371517/1-394 ---------- ---------- ---------- ---------- ----GSKFWI ENSBTAP00000029075/1-382 ---------- ---------- ---------- ---------- ---------- bmy_20692T0/1-378 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000010775/1-394 ---------- ---------- ---------- ---------- ----CSKFWI 551 600 BACU015030/1-514 LFVRYMD--- ENSP00000371517/1-394 LYPTHSNIQK ENSBTAP00000029075/1-382 --LRVNL--- bmy_20692T0/1-378 --PRANL--- ENSTTRP00000010775/1-394 SFPHSNIQKK