KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:37:40 2014 Check: 00 .. Name: ENSP00000359361/1-648 Len: 652 Check: 1692 Weight: 1.00 Name: ENSTTRP00000001404/1-559 Len: 652 Check: 3607 Weight: 1.00 Name: ENSBTAP00000029077/1-647 Len: 652 Check: 4564 Weight: 1.00 Name: bmy_21541T0/1-545 Len: 652 Check: 1376 Weight: 1.00 Name: BACU001342/1-545 Len: 652 Check: 1822 Weight: 1.00 // 1 50 ENSP00000359361/1-648 MSHHGGAPKA STWVVASRRS STVSRAPERR PAEELNRTGP EGYSVGRGGR ENSTTRP00000001404/1-559 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000029077/1-647 MSRLETGANA SSWVAASRRD EALPRAPDTS PAEEQSQGSG RGQRTCAGGG bmy_21541T0/1-545 ---------- ---------- ---------- ---------- ---------- BACU001342/1-545 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000359361/1-648 WRGTSRPPEA VAAGHEELPL CFALKSHFVG AV--IGRGGS KIKNIQSTTN ENSTTRP00000001404/1-559 ---------- ---------- ---------- ---MSRRGGS KIKEIQSSTY ENSBTAP00000029077/1-647 QRGSFGLQQP EGAGIREPPL SFKLKNDCVG AVIETGRGGS NIKEIQSSTY bmy_21541T0/1-545 ---------- ---------- --MIWEELEK ALSKVGRGGS KIKEIQSSTY BACU001342/1-545 ---------- ---------- ---------- ---------- ---------- 101 150 ENSP00000359361/1-648 TTIQIIQEQP ESLVKIFGSK AMQTKAKAVI DNFVKKLEEN YNSECGIDTA ENSTTRP00000001404/1-559 TKIQIIKGYP EAEVRIFGTK AMQSKAKTVI DNLVQE-QED YKTEPKVDVA ENSBTAP00000029077/1-647 TKIQIIRGYP EAEVRIFGTK AMQSKAKTVI DDLVKK-QEE YKTESKLGVA bmy_21541T0/1-545 TKIQIIKGYP EAEVRIFGTK AMQSKAKTVI DNLVQK-QED YKTESKVDVA BACU001342/1-545 MRYMIIKGYP EAEVRIFGTK AMQSKAKTVI DNLVQR-QED YKTEPKVDVA 151 200 ENSP00000359361/1-648 -FQPSVGKDG STDNNVVAGD RPLIDWDQIR EEGLKWQKTK WADLPPIKKN ENSTTRP00000001404/1-559 VVQPSDGKDA RKD---VSGN QKLVDWDKCR ENILKWSKKK WAGLPPIKKN ENSBTAP00000029077/1-647 AVQLSDGKDA MKD---VSGE QKLIDWDKFR ENILKWNEKK WAGLPPVKKN bmy_21541T0/1-545 VVQPSDGTDA RKD---VSGN QKLVDWDKFR EDILKWNKKK WAGLPPIKKN BACU001342/1-545 VVQPSDGKDA RKD---VSGN QKLVDWDKFR EDILKCNKKK WAGLPPIKKN 201 250 ENSP00000359361/1-648 FYKESTATSA MSKVEADSWR KENFNITWDD LKDGEKRPIP NPTCTFDDAF ENSTTRP00000001404/1-559 FYVESETTSS MSQDQADNWR RENYNIMCDD LKGGEKRPLP NPIGNFEDAF ENSBTAP00000029077/1-647 FYIESEKTSS MSQEQVDNWR KENYNIICDD LKDGEKRPLP NPTCNFEDAF bmy_21541T0/1-545 FYVESETTSS MSQDQADNWR RENYNIMCDD LKGGEKRPLP NPVGNFEDAF BACU001342/1-545 FYVESETTSS MSQDQADNWR RENYNIMCDD LKGGEKRPLP NPVGNFEDAF 251 300 ENSP00000359361/1-648 QCYPEVMENI KKAGFQKPTP IQSQAWPIVL QGIDLIGVAQ TGTGKTLCYL ENSTTRP00000001404/1-559 QCYPEVMRNL QKAGFQRPTP IQSQAWPIIL QGVDLIGIAQ TGTGKTLTYL ENSBTAP00000029077/1-647 HCYPEVMRNI EKAGFQKPTP IQSQAWPIIL QGIDLIGVAQ TGTGKTLSYL bmy_21541T0/1-545 HCYPEVMRNL QKAGFQRPTP IQSQAWPIIL QGVDLIGVAQ TGTGKTLSYL BACU001342/1-545 HCYPEVMRNL QKAGFQRPTP IQSQAWPIIL QGVDLIGVAQ TGTGKTLSYL 301 350 ENSP00000359361/1-648 MPGFIHLVLQ PSLKGQRNRP GMLVLTPTRE LALQVEGECC KYSYKGLRSV ENSTTRP00000001404/1-559 VPGFIHIDSQ PS-----NGP GMLILTPEK- LSQQEEAECR KYSYKCLKSV ENSBTAP00000029077/1-647 MPGFIHIDSQ PVLQRARNGP GMLVLTPTRE LALQVDAECS EYSYRGLKSV bmy_21541T0/1-545 MPGFIHIDSQ PL---ARNGP GMLVLTPTRE LALQVEAECR KYSYKGLKSV BACU001342/1-545 MPGFIHIDSQ PL---ARNGP GMLVLTPTRE LALQVEAECR KYSYKGLKSV 351 400 ENSP00000359361/1-648 CVYGGGNRDE QIEELKKGVD IIIATPGRLN DLQMSNFVNL KNITYLVLDE ENSTTRP00000001404/1-559 CIYGGGDRDG QIKDLAKGVD IIIATPGRLH DLQMNNFVHL KSVTYLVLDE ENSBTAP00000029077/1-647 CIYGGGDRDG QIKDLSKGAD IIIATPGRLH DLQMNNFVYL KSITYLVLDE bmy_21541T0/1-545 CIYGGGDRDG QIKDLAKGVD IIIATPGRLH DLQMNNFVYL KSITYLVI-- BACU001342/1-545 CIYGGGDRDG QIKDLAKGVD IIIATPGRLH DLQMNNFVYL KSITYLVLDE 401 450 ENSP00000359361/1-648 ADKMLDMGFE PQIMKILLDV RPDRQTVMTS ATWPHSVHRL AQSYLKEPMI ENSTTRP00000001404/1-559 ADKMLDMGFE PQIMKILLDV RPDRQTVMTS ATWPCAVRRL AQSYLKEPMI ENSBTAP00000029077/1-647 ADKMLDMGFE PQIMKILLDV RPDRQTVMTS ATWPYAVRRL AQSYLKEPMI bmy_21541T0/1-545 ---------- ---------- ------VEQG ATWPCAVRRL AQSYLKEPMI BACU001342/1-545 ADKMLDMGFE PQIMKILLDV RPDRQTVMTS ATWPCAVRRL AQSYLKEPMI 451 500 ENSP00000359361/1-648 VYVGTLDLVA VSSVKQNIIV TTEEEKWSHM QTFLQSMSST DKVIVFVSRK ENSTTRP00000001404/1-559 VYVGTLDLVA VSTVKQNIIV TTEDEKQSHI QTFIESLSPK DKVIIFVSRK ENSBTAP00000029077/1-647 VYVGTLDLVA VSTVTQNIIV TTEDEKRSHI QAFIDSMSPK DKVIIFVSRK bmy_21541T0/1-545 VYVGTLDLAA VSTVKQNIIV TTEDEKRSHI QTFIESMSPK DKVIIFVSRK BACU001342/1-545 VYVGTLDLAA VSTVKQNIIV TTEDEKRSLI QTFIESMSPK DKVIIFVSRK 501 550 ENSP00000359361/1-648 AVADHLSSDL ILGNISVESL HGDREQRDRE KALENFKTGK VRILIATDLA ENSTTRP00000001404/1-559 AVADHLASDL SIRHISVESL HGNREQSDRE RALKNFRTGE VRILIATDLA ENSBTAP00000029077/1-647 AVADHLSSDL GIRRISVESL HGNREQSDRE RALKSFKTGK VRILIATDLA bmy_21541T0/1-545 AVADHLSSDL CIRHISVESL HGNREQSDRE RALKNFKTGK VRILIATDLA BACU001342/1-545 AVADHLSSDL CIQHISVESL HGNREQSDRE RALKNFKTGK VRILIATDLA 551 600 ENSP00000359361/1-648 SRGLDVHDVT HVYNFDFPRN IEEYVHRIGR TGRAGRTGVS ITTLTRNDWR ENSTTRP00000001404/1-559 SRGLDVHDVT HVYNYDFPRN IEEYVHRVGR TGRAGXXXXX XXXXXXXXXX ENSBTAP00000029077/1-647 SRGLDVHDVT HVYNYDFPRN IEEYVHRVGR TGRAGRTGVS ITLITRNDWK bmy_21541T0/1-545 SRGLDVHDVT HVYNYDFPRN IEEYVHRVGR TGRAGRTGVS VTLITRNDWK BACU001342/1-545 SRGLDVHDVT HVYNYDFPRN IEEYVHRVGR TGRAGRTGVS VTLITRNDWK 601 650 ENSP00000359361/1-648 VASELINILE RANQSIPEEL VSMAERFKAH QQKREMERKM ERPQGRPKKF ENSTTRP00000001404/1-559 XXXXXXXXXX XXXXSVPEDL VVMAERYKAN KLKKEMENKW ERPQGKPKMF ENSBTAP00000029077/1-647 IAGELINILE RANQSVPEDL VSMAERYKAN KLKKETENKW GRPQGKPRKF bmy_21541T0/1-545 IAGELINILE RANQSVPEDL VVMAERYKAN KLKKEMENKW ERPQGKPKKF BACU001342/1-545 IAGELINILE RANQSVPEDL VVMAERYKAN KLKKEMENKW ERPQGKPKKF 651 700 ENSP00000359361/1-648 H- ENSTTRP00000001404/1-559 YY ENSBTAP00000029077/1-647 Y- bmy_21541T0/1-545 YC BACU001342/1-545 YC